RNA–Protein interactions for RNA: ENST00000559340.1

LDLR-210, Transcript of low density lipoprotein receptor, humanhuman

TSL 5

Gene LDLR, Length 605 nt, Biotype nonsense mediated decay, Subcellular localisation Cytoplasm, Endoplasmic reticulum, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
LDLR-210ENST00000559340 CTSDP07339 412 aaPredicted RBP7.44□□□□□ -1.22
LDLR-210ENST00000559340 IGKV1-13P0DP09 117 aa7.44□□□□□ -1.22
LDLR-210ENST00000559340 REG1BP48304 166 aa7.44□□□□□ -1.22
LDLR-210ENST00000559340 HES1Q14469 280 aa7.44□□□□□ -1.22
LDLR-210ENST00000559340 HABP2Q14520 560 aaPredicted RBP7.44□□□□□ -1.22
LDLR-210ENST00000559340 RPL39P5Q59GN2 51 aa7.44□□□□□ -1.22
LDLR-210ENST00000559340 LDLRAD2Q5SZI1 272 aa7.44□□□□□ -1.22
LDLR-210ENST00000559340 DHRS7BQ6IAN0 325 aaPredicted RBP7.44□□□□□ -1.22
LDLR-210ENST00000559340 PDPNQ86YL7 162 aa7.44□□□□□ -1.22
LDLR-210ENST00000559340 OR4D10Q8NGI6 311 aa7.44□□□□□ -1.22
LDLR-210ENST00000559340 CD300LFQ8TDQ1 290 aa7.44□□□□□ -1.22
LDLR-210ENST00000559340 C17orf50Q8WW18 174 aa7.44□□□□□ -1.22
LDLR-210ENST00000559340 ZNF48Q96MX3 618 aaPredicted RBP7.44□□□□□ -1.22
LDLR-210ENST00000559340 ZNF251Q9BRH9 671 aa7.44□□□□□ -1.22
LDLR-210ENST00000559340 RSRP1Q9BUV0 290 aa7.44□□□□□ -1.22
LDLR-210ENST00000559340 COPZ2Q9P299 210 aa7.44□□□□□ -1.22
LDLR-210ENST00000559340 WASHC3Q9Y3C0 194 aa7.44□□□□□ -1.22
LDLR-210ENST00000559340 DNHD1Q96M86 4753 aa7.43□□□□□ -1.22
LDLR-210ENST00000559340 PIGBOS1A0A0B4J2F0 54 aa7.43□□□□□ -1.22
LDLR-210ENST00000559340 LINC00854A0A1B0GVQ3 168 aa7.43□□□□□ -1.22
LDLR-210ENST00000559340 FAM90A9PA6NNJ1 464 aa7.43□□□□□ -1.22
LDLR-210ENST00000559340 M0QZK8 103 aa7.43□□□□□ -1.22
LDLR-210ENST00000559340 HOXA3O43365 443 aaPredicted RBP7.43□□□□□ -1.22
LDLR-210ENST00000559340 MOSP00540 346 aa7.43□□□□□ -1.22
LDLR-210ENST00000559340 CRYBA1P05813 215 aa7.43□□□□□ -1.22
LDLR-210ENST00000559340 CT45A6P0DMU7 189 aa7.43□□□□□ -1.22
LDLR-210ENST00000559340 CT45A5P0DMU8 189 aa7.43□□□□□ -1.22
LDLR-210ENST00000559340 CT45A7P0DMV0 189 aa7.43□□□□□ -1.22
LDLR-210ENST00000559340 TMEM11P17152 192 aa7.43□□□□□ -1.22
LDLR-210ENST00000559340 GNRHRP30968 328 aa7.43□□□□□ -1.22
LDLR-210ENST00000559340 DUTP33316 252 aaKnown RBP7.43□□□□□ -1.22
LDLR-210ENST00000559340 LGALS7P47929 136 aa7.43□□□□□ -1.22
LDLR-210ENST00000559340 HILS1P60008 231 aa7.43□□□□□ -1.22
LDLR-210ENST00000559340 RPL15P61313 204 aaKnown RBP7.43□□□□□ -1.22
LDLR-210ENST00000559340 RND3P61587 244 aa7.43□□□□□ -1.22
LDLR-210ENST00000559340 EBI3Q14213 229 aa7.43□□□□□ -1.22
LDLR-210ENST00000559340 RBMS2Q15434 407 aaKnown RBP7.43□□□□□ -1.22
LDLR-210ENST00000559340 AADACL3Q5VUY0 350 aa7.43□□□□□ -1.22
LDLR-210ENST00000559340 ZNF818PQ6ZRF7 136 aa7.43□□□□□ -1.22
LDLR-210ENST00000559340 KCTD9Q7L273 389 aa7.43□□□□□ -1.22
LDLR-210ENST00000559340 DYNAPQ8N1N2 210 aa7.43□□□□□ -1.22
LDLR-210ENST00000559340 ZDHHC22Q8N966 263 aa7.43□□□□□ -1.22
LDLR-210ENST00000559340 OR8H1Q8NGG4 311 aa7.43□□□□□ -1.22
LDLR-210ENST00000559340 OR5AN1Q8NGI8 311 aa7.43□□□□□ -1.22
LDLR-210ENST00000559340 MARCH1Q8TCQ1 289 aa7.43□□□□□ -1.22
LDLR-210ENST00000559340 TCTEX1D2Q8WW35 142 aa7.43□□□□□ -1.22
LDLR-210ENST00000559340 FLYWCH2Q96CP2 140 aaKnown RBP7.43□□□□□ -1.22
LDLR-210ENST00000559340 TSNAXQ99598 290 aaKnown RBP7.43□□□□□ -1.22
LDLR-210ENST00000559340 MRPL20Q9BYC9 149 aaKnown RBP7.43□□□□□ -1.22
LDLR-210ENST00000559340 FXYD6Q9H0Q3 95 aa7.43□□□□□ -1.22
LDLR-210ENST00000559340 PALMDQ9NP74 551 aa7.43□□□□□ -1.22
LDLR-210ENST00000559340 FAM212BQ9NTI7 297 aaPredicted RBP7.43□□□□□ -1.22
LDLR-210ENST00000559340 SLC35D1Q9NTN3 355 aa7.43□□□□□ -1.22
LDLR-210ENST00000559340 VPREB3Q9UKI3 123 aa7.43□□□□□ -1.22
LDLR-210ENST00000559340 GPR132Q9UNW8 380 aa7.43□□□□□ -1.22
LDLR-210ENST00000559340 TCF19Q9Y242 345 aa7.43□□□□□ -1.22
LDLR-210ENST00000559340 KCNIP3Q9Y2W7 256 aa7.43□□□□□ -1.22
LDLR-210ENST00000559340 SOX21Q9Y651 276 aaPredicted RBP7.43□□□□□ -1.22
LDLR-210ENST00000559340 TNCP24821 2201 aa7.43□□□□□ -1.22
LDLR-210ENST00000559340 PLXNB1O43157 2135 aa7.42□□□□□ -1.22
LDLR-210ENST00000559340 MDFIC2A0A1B0GVS7 189 aa7.42□□□□□ -1.22
LDLR-210ENST00000559340 FAM240BA0A1B0GVZ2 78 aa7.42□□□□□ -1.22
LDLR-210ENST00000559340 H0YJW9 148 aa7.42□□□□□ -1.22
LDLR-210ENST00000559340 PGLYRP1O75594 196 aaPredicted RBP7.42□□□□□ -1.22
LDLR-210ENST00000559340 ATG12O94817 140 aa7.42□□□□□ -1.22
LDLR-210ENST00000559340 IGKV1D-33P01593 117 aa7.42□□□□□ -1.22
LDLR-210ENST00000559340 IGKV1-33P01594 117 aa7.42□□□□□ -1.22
LDLR-210ENST00000559340 SNRNP70P08621 437 aaKnown RBP7.42□□□□□ -1.22
LDLR-210ENST00000559340 PIGPP57054 158 aa7.42□□□□□ -1.22
LDLR-210ENST00000559340 TAS2R31P59538 309 aa7.42□□□□□ -1.22
LDLR-210ENST00000559340 RPS16P62249 146 aaKnown RBP7.42□□□□□ -1.22
LDLR-210ENST00000559340 ASAH1Q13510 395 aa7.42□□□□□ -1.22
LDLR-210ENST00000559340 DIAPH2-AS1Q14236 149 aa7.42□□□□□ -1.22
LDLR-210ENST00000559340 SLC9A3R2Q15599 337 aa7.42□□□□□ -1.22
LDLR-210ENST00000559340 FAAP20Q6NZ36 180 aa7.42□□□□□ -1.22
LDLR-210ENST00000559340 SGPP2Q8IWX5 399 aa7.42□□□□□ -1.22
LDLR-210ENST00000559340 OR4C13Q8NGP0 309 aa7.42□□□□□ -1.22
LDLR-210ENST00000559340 OR13C8Q8NGS7 320 aa7.42□□□□□ -1.22
LDLR-210ENST00000559340 OR4S2Q8NH73 311 aa7.42□□□□□ -1.22
LDLR-210ENST00000559340 OSR1Q8TAX0 266 aaPredicted RBP7.42□□□□□ -1.22
LDLR-210ENST00000559340 ZFAND2BQ8WV99 257 aa7.42□□□□□ -1.22
LDLR-210ENST00000559340 CFHR4Q92496 578 aa7.42□□□□□ -1.22
LDLR-210ENST00000559340 LIN7CQ9NUP9 197 aaKnown RBP7.42□□□□□ -1.22
LDLR-210ENST00000559340 KIAA1456Q9P272 454 aa7.42□□□□□ -1.22
LDLR-210ENST00000559340 MXRA5Q9NR99 2828 aa7.42□□□□□ -1.22
LDLR-210ENST00000559340 IGHV3-72A0A0B4J1Y9 119 aa7.41□□□□□ -1.22
LDLR-210ENST00000559340 TEX13DA0A0J9YY54 714 aaPredicted RBP7.41□□□□□ -1.22
LDLR-210ENST00000559340 A6NDX4 124 aa7.41□□□□□ -1.22
LDLR-210ENST00000559340 DNAJC9-AS1A6NH13 148 aa7.41□□□□□ -1.22
LDLR-210ENST00000559340 SHOXO15266 292 aa7.41□□□□□ -1.22
LDLR-210ENST00000559340 MPPED1O15442 326 aa7.41□□□□□ -1.22
LDLR-210ENST00000559340 PLA2G10O15496 165 aa7.41□□□□□ -1.22
LDLR-210ENST00000559340 RBFOX2O43251 390 aaKnown RBP eCLIP7.41□□□□□ -1.22
LDLR-210ENST00000559340 FCGR3BO75015 233 aa7.41□□□□□ -1.22
LDLR-210ENST00000559340 PROP1O75360 226 aa7.41□□□□□ -1.22
LDLR-210ENST00000559340 OR2F2O95006 317 aa7.41□□□□□ -1.22
LDLR-210ENST00000559340 NDUFB6O95139 128 aa7.41□□□□□ -1.22
LDLR-210ENST00000559340 VENTXO95231 258 aa7.41□□□□□ -1.22
LDLR-210ENST00000559340 HRASP01112 189 aa7.41□□□□□ -1.22
LDLR-210ENST00000559340 IGLV2-14P01704 120 aa7.41□□□□□ -1.22
Retrieved 100 of 20,778 RNA–protein pairs in 42.9 ms