RNA–Protein interactions for RNA: ENST00000557657.5

TMEM260-216, Transcript of transmembrane protein 260, humanhuman

TSL 1 (best)

Gene TMEM260, Length 2,572 nt, Biotype retained intron, Subcellular localisation Endoplasmic reticulum .

Download Table  
RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
TMEM260-216ENST00000557657 TFF3Q07654 80 aa17.65■□□□□ 0.42
TMEM260-216ENST00000557657 FABP9Q0Z7S8 132 aa17.65■□□□□ 0.42
TMEM260-216ENST00000557657 DUX4L9Q6RFH8 374 aaPredicted RBP17.65■□□□□ 0.42
TMEM260-216ENST00000557657 PRR7Q8TB68 274 aa17.65■□□□□ 0.42
TMEM260-216ENST00000557657 SPRY3O43610 288 aa17.65■□□□□ 0.42
TMEM260-216ENST00000557657 ZNF737O75373 536 aa17.65■□□□□ 0.42
TMEM260-216ENST00000557657 HBE1P02100 147 aa17.65■□□□□ 0.42
TMEM260-216ENST00000557657 FAM90A2PQ658T7 463 aa17.65■□□□□ 0.42
TMEM260-216ENST00000557657 Q8WTZ3 238 aa17.65■□□□□ 0.42
TMEM260-216ENST00000557657 SMDT1Q9H4I9 107 aa17.65■□□□□ 0.42
TMEM260-216ENST00000557657 RPL39P5Q59GN2 51 aa17.64■□□□□ 0.41
TMEM260-216ENST00000557657 MBNL2Q5VZF2 373 aaKnown RBP17.64■□□□□ 0.41
TMEM260-216ENST00000557657 SLC16A13Q7RTY0 426 aa17.64■□□□□ 0.41
TMEM260-216ENST00000557657 MOGAT3Q86VF5 341 aa17.64■□□□□ 0.41
TMEM260-216ENST00000557657 GCSAMQ8N6F7 178 aa17.64■□□□□ 0.41
TMEM260-216ENST00000557657 OR2V2Q96R30 315 aa17.64■□□□□ 0.41
TMEM260-216ENST00000557657 NIPSNAP3BQ9BS92 247 aa17.64■□□□□ 0.41
TMEM260-216ENST00000557657 SLC25A22Q9H936 323 aa17.64■□□□□ 0.41
TMEM260-216ENST00000557657 FAM215AQ9Y5M1 114 aa17.64■□□□□ 0.41
TMEM260-216ENST00000557657 TGIF2-C20orf24A0A0A6YYL0 155 aa17.64■□□□□ 0.41
TMEM260-216ENST00000557657 AHRRA9YTQ3 701 aa17.64■□□□□ 0.41
TMEM260-216ENST00000557657 BCL2P10415 239 aa17.64■□□□□ 0.41
TMEM260-216ENST00000557657 RPS10P46783 165 aaKnown RBP17.64■□□□□ 0.41
TMEM260-216ENST00000557657 KHDC3LQ587J8 217 aa17.64■□□□□ 0.41
TMEM260-216ENST00000557657 DTD1Q8TEA8 209 aa17.64■□□□□ 0.41
TMEM260-216ENST00000557657 GATAD1Q8WUU5 269 aa17.64■□□□□ 0.41
TMEM260-216ENST00000557657 PTPRBP23467 1997 aa17.64■□□□□ 0.41
TMEM260-216ENST00000557657 MAP1LC3B2A6NCE7 125 aa17.63■□□□□ 0.41
TMEM260-216ENST00000557657 TM4SF5O14894 197 aa17.63■□□□□ 0.41
TMEM260-216ENST00000557657 ZNF134P52741 427 aa17.63■□□□□ 0.41
TMEM260-216ENST00000557657 CATR1Q13166 79 aa17.63■□□□□ 0.41
TMEM260-216ENST00000557657 DPPA3Q6W0C5 159 aa17.63■□□□□ 0.41
TMEM260-216ENST00000557657 HEPN1Q6WQI6 88 aa17.63■□□□□ 0.41
TMEM260-216ENST00000557657 H2BFWTQ7Z2G1 175 aa17.63■□□□□ 0.41
TMEM260-216ENST00000557657 QTRT1Q9BXR0 403 aaKnown RBP17.63■□□□□ 0.41
TMEM260-216ENST00000557657 MAP1LC3BQ9GZQ8 125 aa17.63■□□□□ 0.41
TMEM260-216ENST00000557657 CTNNBIP1Q9NSA3 81 aaPredicted RBP17.63■□□□□ 0.41
TMEM260-216ENST00000557657 CEBPZOSA8MTT3 80 aa17.63■□□□□ 0.41
TMEM260-216ENST00000557657 OR9G9P0C7N8 305 aa17.63■□□□□ 0.41
TMEM260-216ENST00000557657 MEOX2P50222 304 aa17.63■□□□□ 0.41
TMEM260-216ENST00000557657 EDDM3BP56851 147 aa17.63■□□□□ 0.41
TMEM260-216ENST00000557657 C1orf229Q6ZS94 237 aaPredicted RBP17.63■□□□□ 0.41
TMEM260-216ENST00000557657 TVP23CQ96ET8 276 aa17.63■□□□□ 0.41
TMEM260-216ENST00000557657 GNG12Q9UBI6 72 aa17.63■□□□□ 0.41
TMEM260-216ENST00000557657 ACACAQ13085 2346 aa17.63■□□□□ 0.41
TMEM260-216ENST00000557657 TRAV1-1A0A0B4J248 108 aa17.62■□□□□ 0.41
TMEM260-216ENST00000557657 MARCH11A6NNE9 402 aa17.62■□□□□ 0.41
TMEM260-216ENST00000557657 PMS2P5A8MQ11 134 aa17.62■□□□□ 0.41
TMEM260-216ENST00000557657 TMEM41BQ5BJD5 291 aa17.62■□□□□ 0.41
TMEM260-216ENST00000557657 PSMG3Q9BT73 122 aaPredicted RBP17.62■□□□□ 0.41
TMEM260-216ENST00000557657 PTPRZ1P23471 2315 aaPredicted RBP17.62■□□□□ 0.41
TMEM260-216ENST00000557657 FCGR3BO75015 233 aa17.62■□□□□ 0.41
TMEM260-216ENST00000557657 ELOBQ15370 118 aa17.62■□□□□ 0.41
TMEM260-216ENST00000557657 MSMO1Q15800 293 aa17.62■□□□□ 0.41
TMEM260-216ENST00000557657 ZADH2Q8N4Q0 377 aa17.62■□□□□ 0.41
TMEM260-216ENST00000557657 ZBTB34Q8NCN2 500 aa17.62■□□□□ 0.41
TMEM260-216ENST00000557657 Q8TCH9 128 aa17.62■□□□□ 0.41
TMEM260-216ENST00000557657 CA5BP1Q8WTZ4 195 aa17.62■□□□□ 0.41
TMEM260-216ENST00000557657 MBD3L1Q8WWY6 194 aa17.62■□□□□ 0.41
TMEM260-216ENST00000557657 DSCAMO60469 2012 aa17.61■□□□□ 0.41
TMEM260-216ENST00000557657 HCFC1P51610 2035 aa17.61■□□□□ 0.41
TMEM260-216ENST00000557657 PIGBOS1A0A0B4J2F0 54 aa17.61■□□□□ 0.41
TMEM260-216ENST00000557657 SLC31A2O15432 143 aa17.61■□□□□ 0.41
TMEM260-216ENST00000557657 OR8U8P0C7N1 319 aa17.61■□□□□ 0.41
TMEM260-216ENST00000557657 NCMAPQ5T1S8 102 aa17.61■□□□□ 0.41
TMEM260-216ENST00000557657 TGIF2LYQ8IUE0 185 aa17.61■□□□□ 0.41
TMEM260-216ENST00000557657 LURAP1Q96LR2 239 aa17.61■□□□□ 0.41
TMEM260-216ENST00000557657 SSX3Q99909 188 aa17.61■□□□□ 0.41
TMEM260-216ENST00000557657 UNKLQ9H9P5 680 aaKnown RBP17.61■□□□□ 0.41
TMEM260-216ENST00000557657 RELNP78509 3460 aa17.61■□□□□ 0.41
TMEM260-216ENST00000557657 FAM90A26D6RGX4 464 aa17.61■□□□□ 0.41
TMEM260-216ENST00000557657 IFNL4K9M1U5 179 aa17.61■□□□□ 0.41
TMEM260-216ENST00000557657 SPINT2O43291 252 aa17.61■□□□□ 0.41
TMEM260-216ENST00000557657 CLDN14O95500 239 aa17.61■□□□□ 0.41
TMEM260-216ENST00000557657 COL8A2P25067 703 aa17.61■□□□□ 0.41
TMEM260-216ENST00000557657 P2RY6Q15077 328 aa17.61■□□□□ 0.41
TMEM260-216ENST00000557657 MBD3L4A6NDZ8 208 aaPredicted RBP17.6■□□□□ 0.41
TMEM260-216ENST00000557657 MBD3L3A6NE82 208 aaPredicted RBP17.6■□□□□ 0.41
TMEM260-216ENST00000557657 MBD3L5A6NJ08 208 aaPredicted RBP17.6■□□□□ 0.41
TMEM260-216ENST00000557657 SRRM5B3KS81 715 aa17.6■□□□□ 0.41
TMEM260-216ENST00000557657 FGF7P21781 194 aa17.6■□□□□ 0.41
TMEM260-216ENST00000557657 MBD3L2Q8NHZ7 208 aaPredicted RBP17.6■□□□□ 0.41
TMEM260-216ENST00000557657 LHX4Q969G2 390 aa17.6■□□□□ 0.41
TMEM260-216ENST00000557657 TRAV3A0A0B4J244 114 aa17.6■□□□□ 0.41
TMEM260-216ENST00000557657 IFNA4P05014 189 aa17.6■□□□□ 0.41
TMEM260-216ENST00000557657 BMP5P22003 454 aa17.6■□□□□ 0.41
TMEM260-216ENST00000557657 GPR12P47775 334 aa17.6■□□□□ 0.41
TMEM260-216ENST00000557657 ITLN1Q8WWA0 313 aa17.6■□□□□ 0.41
TMEM260-216ENST00000557657 HIPK2Q9H2X6 1198 aa17.6■□□□□ 0.41
TMEM260-216ENST00000557657 CISD1Q9NZ45 108 aaKnown RBP17.6■□□□□ 0.41
TMEM260-216ENST00000557657 UBE2CO00762 179 aa17.59■□□□□ 0.41
TMEM260-216ENST00000557657 SERF2P84101 59 aa17.59■□□□□ 0.41
TMEM260-216ENST00000557657 IQCF2Q8IXL9 164 aa17.59■□□□□ 0.41
TMEM260-216ENST00000557657 DEFB108BQ8NET1 73 aa17.59■□□□□ 0.41
TMEM260-216ENST00000557657 SNIP1Q8TAD8 396 aaKnown RBP17.59■□□□□ 0.41
TMEM260-216ENST00000557657 NANPQ8TBE9 248 aa17.59■□□□□ 0.41
TMEM260-216ENST00000557657 R3HDM4Q96D70 268 aa17.59■□□□□ 0.41
TMEM260-216ENST00000557657 TOLLIPQ9H0E2 274 aa17.59■□□□□ 0.41
TMEM260-216ENST00000557657 SLC39A9Q9NUM3 307 aa17.59■□□□□ 0.41
TMEM260-216ENST00000557657 CEACAM4O75871 244 aa17.59■□□□□ 0.41
Retrieved 100 of 20,778 RNA–protein pairs in 26.6 ms