RNA–Protein interactions for RNA: ENST00000557487.5

SHMT2-232, Transcript of serine hydroxymethyltransferase 2, humanhuman

TSL 1 (best) BASIC

Gene SHMT2, Length 1,918 nt, Biotype protein coding, Subcellular localisation Cytosol .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SHMT2-232ENST00000557487 MCEMP1Q8IX19 187 aa13.7□□□□□ -0.22
SHMT2-232ENST00000557487 PRR18Q8N4B5 295 aa13.7□□□□□ -0.22
SHMT2-232ENST00000557487 DTD1Q8TEA8 209 aa13.7□□□□□ -0.22
SHMT2-232ENST00000557487 GP6Q9HCN6 339 aa13.7□□□□□ -0.22
SHMT2-232ENST00000557487 ABI3Q9P2A4 366 aa13.7□□□□□ -0.22
SHMT2-232ENST00000557487 ZNF292O60281 2723 aa13.69□□□□□ -0.22
SHMT2-232ENST00000557487 SDK2Q58EX2 2172 aa13.69□□□□□ -0.22
SHMT2-232ENST00000557487 TMEM210A6NLX4 147 aa13.69□□□□□ -0.22
SHMT2-232ENST00000557487 LILRA1O75019 489 aa13.69□□□□□ -0.22
SHMT2-232ENST00000557487 CD59P13987 128 aa13.69□□□□□ -0.22
SHMT2-232ENST00000557487 FOXG1P55316 489 aaPredicted RBP13.69□□□□□ -0.22
SHMT2-232ENST00000557487 MRPL49Q13405 166 aaKnown RBP13.69□□□□□ -0.22
SHMT2-232ENST00000557487 P2RY6Q15077 328 aa13.69□□□□□ -0.22
SHMT2-232ENST00000557487 NUFIP2Q7Z417 695 aaKnown RBP13.69□□□□□ -0.22
SHMT2-232ENST00000557487 KCNIP2Q9NS61 270 aa13.69□□□□□ -0.22
SHMT2-232ENST00000557487 FUT9Q9Y231 359 aa13.69□□□□□ -0.22
SHMT2-232ENST00000557487 ODAMA1E959 279 aa13.68□□□□□ -0.22
SHMT2-232ENST00000557487 C11orf94C9JXX5 98 aa13.68□□□□□ -0.22
SHMT2-232ENST00000557487 PAGE4O60829 102 aa13.68□□□□□ -0.22
SHMT2-232ENST00000557487 RNF224P0DH78 156 aa13.68□□□□□ -0.22
SHMT2-232ENST00000557487 CDC34P49427 236 aaPredicted RBP13.68□□□□□ -0.22
SHMT2-232ENST00000557487 FOXL1Q12952 345 aa13.68□□□□□ -0.22
SHMT2-232ENST00000557487 UNQ6494/PRO21346Q6UXR6 183 aa13.68□□□□□ -0.22
SHMT2-232ENST00000557487 PIP4P1Q86T03 277 aa13.68□□□□□ -0.22
SHMT2-232ENST00000557487 GBGT1Q8N5D6 347 aa13.68□□□□□ -0.22
SHMT2-232ENST00000557487 SCCPDHQ8NBX0 429 aa13.68□□□□□ -0.22
SHMT2-232ENST00000557487 DDA1Q9BW61 102 aa13.68□□□□□ -0.22
SHMT2-232ENST00000557487 OOEPA6NGQ2 149 aa13.68□□□□□ -0.22
SHMT2-232ENST00000557487 MPDU1O75352 247 aa13.68□□□□□ -0.22
SHMT2-232ENST00000557487 NXPH2O95156 264 aa13.68□□□□□ -0.22
SHMT2-232ENST00000557487 PPP1CBP62140 327 aa13.68□□□□□ -0.22
SHMT2-232ENST00000557487 TBC1D28Q2M2D7 210 aa13.68□□□□□ -0.22
SHMT2-232ENST00000557487 SLC35E4Q6ICL7 350 aa13.68□□□□□ -0.22
SHMT2-232ENST00000557487 CT55Q8WUE5 264 aa13.68□□□□□ -0.22
SHMT2-232ENST00000557487 BCL2L2Q92843 193 aaPredicted RBP13.68□□□□□ -0.22
SHMT2-232ENST00000557487 ELOVL1Q9BW60 279 aa13.68□□□□□ -0.22
SHMT2-232ENST00000557487 ZNF891A8MT65 544 aaPredicted RBP13.67□□□□□ -0.22
SHMT2-232ENST00000557487 ZNF705GA8MUZ8 300 aaPredicted RBP13.67□□□□□ -0.22
SHMT2-232ENST00000557487 NEURL1O76050 574 aa13.67□□□□□ -0.22
SHMT2-232ENST00000557487 KRASP01116 189 aa13.67□□□□□ -0.22
SHMT2-232ENST00000557487 SELEP16581 610 aa13.67□□□□□ -0.22
SHMT2-232ENST00000557487 NDUFB7P17568 137 aa13.67□□□□□ -0.22
SHMT2-232ENST00000557487 ABHD17BQ5VST6 288 aa13.67□□□□□ -0.22
SHMT2-232ENST00000557487 SPINK14Q6IE38 97 aa13.67□□□□□ -0.22
SHMT2-232ENST00000557487 TMEM144Q7Z5S9 345 aa13.67□□□□□ -0.22
SHMT2-232ENST00000557487 MRPL52Q86TS9 123 aaKnown RBP13.67□□□□□ -0.22
SHMT2-232ENST00000557487 MRPL41Q8IXM3 137 aaKnown RBP13.67□□□□□ -0.22
SHMT2-232ENST00000557487 FAM216AQ8WUB2 273 aa13.67□□□□□ -0.22
SHMT2-232ENST00000557487 TMEM37Q8WXS4 190 aa13.67□□□□□ -0.22
SHMT2-232ENST00000557487 MISP3Q96FF7 219 aa13.67□□□□□ -0.22
SHMT2-232ENST00000557487 OR2D2Q9H210 308 aa13.67□□□□□ -0.22
SHMT2-232ENST00000557487 TRAV9-1A0A075B6T8 112 aa13.66□□□□□ -0.22
SHMT2-232ENST00000557487 FAM90A9PA6NNJ1 464 aa13.66□□□□□ -0.22
SHMT2-232ENST00000557487 MT-CO3P00414 261 aa13.66□□□□□ -0.22
SHMT2-232ENST00000557487 G6PCP35575 357 aa13.66□□□□□ -0.22
SHMT2-232ENST00000557487 RPP30P78346 268 aaKnown RBP13.66□□□□□ -0.22
SHMT2-232ENST00000557487 H2BFWTQ7Z2G1 175 aa13.66□□□□□ -0.22
SHMT2-232ENST00000557487 LINC01551Q86U37 167 aa13.66□□□□□ -0.22
SHMT2-232ENST00000557487 NINJ1Q92982 152 aa13.66□□□□□ -0.22
SHMT2-232ENST00000557487 THOC3Q96J01 351 aaKnown RBP13.66□□□□□ -0.22
SHMT2-232ENST00000557487 CLN8Q9UBY8 286 aa13.66□□□□□ -0.22
SHMT2-232ENST00000557487 WDR83OSQ9Y284 106 aa13.66□□□□□ -0.22
SHMT2-232ENST00000557487 TRAV39A0A0B4J263 110 aa13.66□□□□□ -0.22
SHMT2-232ENST00000557487 HAND1O96004 215 aa13.66□□□□□ -0.22
SHMT2-232ENST00000557487 RPL15P61313 204 aaKnown RBP13.66□□□□□ -0.22
SHMT2-232ENST00000557487 RTP5Q14D33 572 aa13.66□□□□□ -0.22
SHMT2-232ENST00000557487 USF2Q15853 346 aaPredicted RBP13.66□□□□□ -0.22
SHMT2-232ENST00000557487 WDR86Q86TI4 376 aa13.66□□□□□ -0.22
SHMT2-232ENST00000557487 WDYHV1Q96HA8 205 aa13.66□□□□□ -0.22
SHMT2-232ENST00000557487 GMPPAQ96IJ6 420 aaPredicted RBP13.66□□□□□ -0.22
SHMT2-232ENST00000557487 HSD17B10Q99714 261 aaKnown RBP13.66□□□□□ -0.22
SHMT2-232ENST00000557487 HES4Q9HCC6 221 aa13.66□□□□□ -0.22
SHMT2-232ENST00000557487 RAMP3O60896 148 aa13.65□□□□□ -0.22
SHMT2-232ENST00000557487 WISP2O76076 250 aa13.65□□□□□ -0.22
SHMT2-232ENST00000557487 IL3RAP26951 378 aa13.65□□□□□ -0.22
SHMT2-232ENST00000557487 PAX5Q02548 391 aa13.65□□□□□ -0.22
SHMT2-232ENST00000557487 TFF3Q07654 80 aa13.65□□□□□ -0.22
SHMT2-232ENST00000557487 AARDQ4LEZ3 155 aa13.65□□□□□ -0.22
SHMT2-232ENST00000557487 TTTY12Q9BZ98 90 aa13.65□□□□□ -0.22
SHMT2-232ENST00000557487 WASF3Q9UPY6 502 aa13.65□□□□□ -0.22
SHMT2-232ENST00000557487 PXMP4Q9Y6I8 212 aa13.65□□□□□ -0.22
SHMT2-232ENST00000557487 HMGB3O15347 200 aaKnown RBP13.64□□□□□ -0.23
SHMT2-232ENST00000557487 ZG16O60844 167 aa13.64□□□□□ -0.23
SHMT2-232ENST00000557487 S1PR2O95136 353 aa13.64□□□□□ -0.23
SHMT2-232ENST00000557487 IL18BPO95998 194 aa13.64□□□□□ -0.23
SHMT2-232ENST00000557487 NUTF2P61970 127 aaKnown RBP13.64□□□□□ -0.23
SHMT2-232ENST00000557487 PLGLB1Q02325 96 aa13.64□□□□□ -0.23
SHMT2-232ENST00000557487 OR1C1Q15619 314 aa13.64□□□□□ -0.23
SHMT2-232ENST00000557487 FBXW9Q5XUX1 488 aa13.64□□□□□ -0.23
SHMT2-232ENST00000557487 MDP1Q86V88 176 aa13.64□□□□□ -0.23
SHMT2-232ENST00000557487 TRAPPC1Q9Y5R8 145 aa13.64□□□□□ -0.23
SHMT2-232ENST00000557487 IQCF6A8MYZ5 107 aa13.64□□□□□ -0.23
SHMT2-232ENST00000557487 C1QTNF9BB2RNN3 333 aa13.64□□□□□ -0.23
SHMT2-232ENST00000557487 C12orf77C9JDV5 145 aa13.64□□□□□ -0.23
SHMT2-232ENST00000557487 CELA3AP09093 270 aa13.64□□□□□ -0.23
SHMT2-232ENST00000557487 OR3A1P47881 315 aa13.64□□□□□ -0.23
SHMT2-232ENST00000557487 ERVFC1-1P60608 527 aa13.64□□□□□ -0.23
SHMT2-232ENST00000557487 RPL30P62888 115 aaKnown RBP13.64□□□□□ -0.23
SHMT2-232ENST00000557487 ZNF816Q0VGE8 651 aaPredicted RBP13.64□□□□□ -0.23
SHMT2-232ENST00000557487 ZNF766Q5HY98 468 aa13.64□□□□□ -0.23
Retrieved 100 of 20,778 RNA–protein pairs in 63.4 ms