RNA–Protein interactions for RNA: ENST00000556825.5

SHMT2-226, Transcript of serine hydroxymethyltransferase 2, humanhuman

TSL 1 (best)

Gene SHMT2, Length 2,215 nt, Biotype nonsense mediated decay, Subcellular localisation Cytosol .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SHMT2-226ENST00000556825 SLC23A3Q6PIS1 610 aa11.7□□□□□ -0.54
SHMT2-226ENST00000556825 ZNF562Q6V9R5 426 aa11.7□□□□□ -0.54
SHMT2-226ENST00000556825 ZNF695Q8IW36 515 aa11.7□□□□□ -0.54
SHMT2-226ENST00000556825 UEVLDQ8IX04 471 aa11.7□□□□□ -0.54
SHMT2-226ENST00000556825 CRIPAKQ8N1N5 446 aa11.7□□□□□ -0.54
SHMT2-226ENST00000556825 WFDC5Q8TCV5 224 aa11.7□□□□□ -0.54
SHMT2-226ENST00000556825 TMEM222Q9H0R3 208 aa11.7□□□□□ -0.54
SHMT2-226ENST00000556825 RAB1BQ9H0U4 201 aa11.7□□□□□ -0.54
SHMT2-226ENST00000556825 PRR33A8MZF0 331 aa11.7□□□□□ -0.54
SHMT2-226ENST00000556825 RPL18Q07020 188 aaKnown RBP11.7□□□□□ -0.54
SHMT2-226ENST00000556825 ADAMTSL5Q6ZMM2 481 aa11.7□□□□□ -0.54
SHMT2-226ENST00000556825 NRTNQ99748 197 aa11.7□□□□□ -0.54
SHMT2-226ENST00000556825 PMCHL2Q9BQD1 86 aa11.7□□□□□ -0.54
SHMT2-226ENST00000556825 TMEM70Q9BUB7 260 aa11.7□□□□□ -0.54
SHMT2-226ENST00000556825 CHRNA10Q9GZZ6 450 aa11.7□□□□□ -0.54
SHMT2-226ENST00000556825 HSPB8Q9UJY1 196 aa11.7□□□□□ -0.54
SHMT2-226ENST00000556825 hDV102S1A0JD36 115 aa11.69□□□□□ -0.54
SHMT2-226ENST00000556825 PGPEP1LA6NFU8 196 aa11.69□□□□□ -0.54
SHMT2-226ENST00000556825 FBLL1A6NHQ2 334 aaKnown RBP11.69□□□□□ -0.54
SHMT2-226ENST00000556825 ZNF850A8MQ14 1090 aa11.69□□□□□ -0.54
SHMT2-226ENST00000556825 M0R2Z0 102 aa11.69□□□□□ -0.54
SHMT2-226ENST00000556825 HMGB3O15347 200 aaKnown RBP11.69□□□□□ -0.54
SHMT2-226ENST00000556825 CXCL10P02778 98 aa11.69□□□□□ -0.54
SHMT2-226ENST00000556825 ASAH2BP0C7U1 165 aa11.69□□□□□ -0.54
SHMT2-226ENST00000556825 CCL5P13501 91 aa11.69□□□□□ -0.54
SHMT2-226ENST00000556825 FHL5Q5TD97 284 aa11.69□□□□□ -0.54
SHMT2-226ENST00000556825 TMEM136Q6ZRR5 245 aa11.69□□□□□ -0.54
SHMT2-226ENST00000556825 OR5AS1Q8N127 324 aa11.69□□□□□ -0.54
SHMT2-226ENST00000556825 LSM10Q969L4 123 aaKnown RBP11.69□□□□□ -0.54
SHMT2-226ENST00000556825 MS4A6AQ9H2W1 248 aa11.69□□□□□ -0.54
SHMT2-226ENST00000556825 WDR54Q9H977 334 aa11.69□□□□□ -0.54
SHMT2-226ENST00000556825 BMPR1BO00238 502 aa11.68□□□□□ -0.54
SHMT2-226ENST00000556825 NDUFB4O95168 129 aa11.68□□□□□ -0.54
SHMT2-226ENST00000556825 NAPSAO96009 420 aa11.68□□□□□ -0.54
SHMT2-226ENST00000556825 PEBP1P30086 187 aaKnown RBP11.68□□□□□ -0.54
SHMT2-226ENST00000556825 MYBPHQ13203 477 aa11.68□□□□□ -0.54
SHMT2-226ENST00000556825 RPEL1Q2QD12 228 aa11.68□□□□□ -0.54
SHMT2-226ENST00000556825 ACSM6Q6P461 480 aa11.68□□□□□ -0.54
SHMT2-226ENST00000556825 NEU4Q8WWR8 484 aaPredicted RBP11.68□□□□□ -0.54
SHMT2-226ENST00000556825 APOBEC3DQ96AK3 386 aaPredicted RBP11.68□□□□□ -0.54
SHMT2-226ENST00000556825 SPANXB1Q9NS25 103 aaPredicted RBP11.68□□□□□ -0.54
SHMT2-226ENST00000556825 CLCF1Q9UBD9 225 aa11.68□□□□□ -0.54
SHMT2-226ENST00000556825 TIMM9Q9Y5J7 89 aa11.68□□□□□ -0.54
SHMT2-226ENST00000556825 hCG_38984A0A1B0GV85 526 aa11.68□□□□□ -0.54
SHMT2-226ENST00000556825 A0A1W2PPV4 95 aa11.68□□□□□ -0.54
SHMT2-226ENST00000556825 B5MCH6 92 aa11.68□□□□□ -0.54
SHMT2-226ENST00000556825 SHISA8B8ZZ34 492 aa11.68□□□□□ -0.54
SHMT2-226ENST00000556825 CRXO43186 299 aaPredicted RBP11.68□□□□□ -0.54
SHMT2-226ENST00000556825 HSBP1O75506 76 aa11.68□□□□□ -0.54
SHMT2-226ENST00000556825 MT-ATP6P00846 226 aa11.68□□□□□ -0.54
SHMT2-226ENST00000556825 EGR1P18146 543 aa11.68□□□□□ -0.54
SHMT2-226ENST00000556825 OTX2P32243 289 aa11.68□□□□□ -0.54
SHMT2-226ENST00000556825 ATP5J2P56134 94 aa11.68□□□□□ -0.54
SHMT2-226ENST00000556825 TNXAQ16473 311 aa11.68□□□□□ -0.54
SHMT2-226ENST00000556825 SSC4DQ8WTU2 575 aa11.68□□□□□ -0.54
SHMT2-226ENST00000556825 RNF133Q8WVZ7 376 aa11.68□□□□□ -0.54
SHMT2-226ENST00000556825 NAA38Q9BRA0 125 aaKnown RBP11.68□□□□□ -0.54
SHMT2-226ENST00000556825 PKIBQ9C010 78 aa11.68□□□□□ -0.54
SHMT2-226ENST00000556825 SLC25A22Q9H936 323 aa11.68□□□□□ -0.54
SHMT2-226ENST00000556825 CENPMQ9NSP4 180 aa11.68□□□□□ -0.54
SHMT2-226ENST00000556825 CRIM1Q9NZV1 1036 aa11.68□□□□□ -0.54
SHMT2-226ENST00000556825 ZNF257Q9Y2Q1 563 aa11.68□□□□□ -0.54
SHMT2-226ENST00000556825 VWC2LB2RUY7 222 aa11.67□□□□□ -0.54
SHMT2-226ENST00000556825 ISLRO14498 428 aa11.67□□□□□ -0.54
SHMT2-226ENST00000556825 BNIP3LO60238 219 aa11.67□□□□□ -0.54
SHMT2-226ENST00000556825 FABP2P12104 132 aa11.67□□□□□ -0.54
SHMT2-226ENST00000556825 GPR12P47775 334 aa11.67□□□□□ -0.54
SHMT2-226ENST00000556825 UQCRFS1P47985 274 aa11.67□□□□□ -0.54
SHMT2-226ENST00000556825 ADIPOQQ15848 244 aa11.67□□□□□ -0.54
SHMT2-226ENST00000556825 C2orf91Q6ZV80 131 aa11.67□□□□□ -0.54
SHMT2-226ENST00000556825 DOK3Q7L591 496 aa11.67□□□□□ -0.54
SHMT2-226ENST00000556825 OR1F12Q8NHA8 337 aa11.67□□□□□ -0.54
SHMT2-226ENST00000556825 C10orf35Q96D05 121 aa11.67□□□□□ -0.54
SHMT2-226ENST00000556825 SPAG8Q99932 426 aaPredicted RBP11.67□□□□□ -0.54
SHMT2-226ENST00000556825 UBE2J1Q9Y385 318 aaPredicted RBP11.67□□□□□ -0.54
SHMT2-226ENST00000556825 IGLV1-36A0A0B4J1U3 117 aa11.67□□□□□ -0.54
SHMT2-226ENST00000556825 A0A1W2PPV9 198 aa11.67□□□□□ -0.54
SHMT2-226ENST00000556825 B9A039 149 aa11.67□□□□□ -0.54
SHMT2-226ENST00000556825 H3BMH7 237 aa11.67□□□□□ -0.54
SHMT2-226ENST00000556825 SLC16A7O60669 478 aa11.67□□□□□ -0.54
SHMT2-226ENST00000556825 PSG2P11465 335 aa11.67□□□□□ -0.54
SHMT2-226ENST00000556825 P2RY2P41231 377 aa11.67□□□□□ -0.54
SHMT2-226ENST00000556825 NMSQ5H8A3 153 aa11.67□□□□□ -0.54
SHMT2-226ENST00000556825 C8orf86Q6ZUL3 223 aa11.67□□□□□ -0.54
SHMT2-226ENST00000556825 MMD2Q8IY49 270 aa11.67□□□□□ -0.54
SHMT2-226ENST00000556825 FOXQ1Q9C009 403 aa11.67□□□□□ -0.54
SHMT2-226ENST00000556825 H3BP45 60 aa11.66□□□□□ -0.54
SHMT2-226ENST00000556825 GPR1P46091 355 aa11.66□□□□□ -0.54
SHMT2-226ENST00000556825 POLR2LP62875 67 aaKnown RBP11.66□□□□□ -0.54
SHMT2-226ENST00000556825 KIR3DS1Q14943 382 aa11.66□□□□□ -0.54
SHMT2-226ENST00000556825 LIN28BQ6ZN17 250 aaKnown RBP eCLIP11.66□□□□□ -0.544e-7■□□□□ 9.3
SHMT2-226ENST00000556825 BPIFA4PQ86YQ2 179 aa11.66□□□□□ -0.54
SHMT2-226ENST00000556825 TAF15Q92804 592 aaKnown RBP eCLIP11.66□□□□□ -0.54
SHMT2-226ENST00000556825 RAB40CQ96S21 281 aa11.66□□□□□ -0.54
SHMT2-226ENST00000556825 HDHD3Q9BSH5 251 aaPredicted RBP11.66□□□□□ -0.54
SHMT2-226ENST00000556825 NDFIP1Q9BT67 221 aa11.66□□□□□ -0.54
SHMT2-226ENST00000556825 KCNIP2Q9NS61 270 aa11.66□□□□□ -0.54
SHMT2-226ENST00000556825 ZNF391Q9UJN7 358 aa11.66□□□□□ -0.54
SHMT2-226ENST00000556825 CACNA1CQ13936 2221 aa11.66□□□□□ -0.54
SHMT2-226ENST00000556825 NXPH3O95157 252 aa11.66□□□□□ -0.54
Retrieved 100 of 20,778 RNA–protein pairs in 39.4 ms