RNA–Protein interactions for RNA: ENST00000556096.6

VPS33B-205, Transcript of VPS33B, late endosome and lysosome associated, humanhuman

TSL 2

Gene VPS33B, Length 1,731 nt, Biotype retained intron, Subcellular localisation Cytoplasm, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
VPS33B-205ENST00000556096 LYRM2Q9NU23 88 aaPredicted RBP12.11□□□□□ -0.47
VPS33B-205ENST00000556096 FAM90A26D6RGX4 464 aa12.11□□□□□ -0.47
VPS33B-205ENST00000556096 M0R1X1 148 aa12.11□□□□□ -0.47
VPS33B-205ENST00000556096 DVL1O14640 695 aa12.11□□□□□ -0.47
VPS33B-205ENST00000556096 RAB29O14966 203 aa12.11□□□□□ -0.47
VPS33B-205ENST00000556096 SLC31A2O15432 143 aa12.11□□□□□ -0.47
VPS33B-205ENST00000556096 RBFOX2O43251 390 aaKnown RBP eCLIP12.11□□□□□ -0.47
VPS33B-205ENST00000556096 CHST1O43916 411 aa12.11□□□□□ -0.47
VPS33B-205ENST00000556096 S1PR2O95136 353 aa12.11□□□□□ -0.47
VPS33B-205ENST00000556096 NFYBP25208 207 aa12.11□□□□□ -0.47
VPS33B-205ENST00000556096 MRPS11P82912 194 aaKnown RBP12.11□□□□□ -0.47
VPS33B-205ENST00000556096 ZNF816Q0VGE8 651 aaPredicted RBP12.11□□□□□ -0.47
VPS33B-205ENST00000556096 ZNF273Q14593 569 aa12.11□□□□□ -0.47
VPS33B-205ENST00000556096 IZUMO4Q1ZYL8 232 aa12.11□□□□□ -0.47
VPS33B-205ENST00000556096 NCR3LG1Q68D85 454 aa12.11□□□□□ -0.47
VPS33B-205ENST00000556096 TMEM200BQ69YZ2 307 aa12.11□□□□□ -0.47
VPS33B-205ENST00000556096 RPL7L1Q6DKI1 246 aaKnown RBP12.11□□□□□ -0.47
VPS33B-205ENST00000556096 HEPN1Q6WQI6 88 aa12.11□□□□□ -0.47
VPS33B-205ENST00000556096 DTX2Q86UW9 622 aa12.11□□□□□ -0.47
VPS33B-205ENST00000556096 LRRC20Q8TCA0 184 aa12.11□□□□□ -0.47
VPS33B-205ENST00000556096 ZNF714Q96N38 554 aa12.11□□□□□ -0.47
VPS33B-205ENST00000556096 RAB40CQ96S21 281 aa12.11□□□□□ -0.47
VPS33B-205ENST00000556096 ANKRD34BA5PLL1 514 aa12.1□□□□□ -0.47
VPS33B-205ENST00000556096 TOR1AO14656 332 aa12.1□□□□□ -0.47
VPS33B-205ENST00000556096 MMP23AO75900 390 aa12.1□□□□□ -0.47
VPS33B-205ENST00000556096 IGHV2-70P01814 119 aa12.1□□□□□ -0.47
VPS33B-205ENST00000556096 DANCRP0C864 163 aa12.1□□□□□ -0.47
VPS33B-205ENST00000556096 DAOP14920 347 aa12.1□□□□□ -0.47
VPS33B-205ENST00000556096 KIR2DS2P43631 304 aa12.1□□□□□ -0.47
VPS33B-205ENST00000556096 PAX9P55771 341 aa12.1□□□□□ -0.47
VPS33B-205ENST00000556096 EWSR1Q01844 656 aaKnown RBP eCLIP12.1□□□□□ -0.47
VPS33B-205ENST00000556096 OR2B11Q5JQS5 317 aa12.1□□□□□ -0.47
VPS33B-205ENST00000556096 UTF1Q5T230 341 aa12.1□□□□□ -0.47
VPS33B-205ENST00000556096 PRAMEF5Q5TYX0 476 aa12.1□□□□□ -0.47
VPS33B-205ENST00000556096 EIF5AL1Q6IS14 154 aaKnown RBP12.1□□□□□ -0.47
VPS33B-205ENST00000556096 SLC25A48Q6ZT89 311 aaKnown RBP12.1□□□□□ -0.47
VPS33B-205ENST00000556096 COMMD7Q86VX2 200 aa12.1□□□□□ -0.47
VPS33B-205ENST00000556096 UBAC2Q8NBM4 344 aa12.1□□□□□ -0.47
VPS33B-205ENST00000556096 NEU4Q8WWR8 484 aaPredicted RBP12.1□□□□□ -0.47
VPS33B-205ENST00000556096 CITED4Q96RK1 184 aa12.1□□□□□ -0.47
VPS33B-205ENST00000556096 PRELID3BQ9Y3B1 194 aa12.1□□□□□ -0.47
VPS33B-205ENST00000556096 FLNBO75369 2602 aaKnown RBP12.09□□□□□ -0.47
VPS33B-205ENST00000556096 FAM24AA6NFZ4 105 aa12.09□□□□□ -0.47
VPS33B-205ENST00000556096 TMEM50AO95807 157 aa12.09□□□□□ -0.47
VPS33B-205ENST00000556096 HPRT1P00492 218 aa12.09□□□□□ -0.47
VPS33B-205ENST00000556096 KRASP01116 189 aa12.09□□□□□ -0.47
VPS33B-205ENST00000556096 IGHV3-7P01780 117 aa12.09□□□□□ -0.47
VPS33B-205ENST00000556096 G6PCP35575 357 aa12.09□□□□□ -0.47
VPS33B-205ENST00000556096 NHLH2Q02577 135 aa12.09□□□□□ -0.47
VPS33B-205ENST00000556096 RPL39P5Q59GN2 51 aa12.09□□□□□ -0.47
VPS33B-205ENST00000556096 FAM74A1Q5RGS3 127 aa12.09□□□□□ -0.47
VPS33B-205ENST00000556096 ODF3L1Q8IXM7 274 aa12.09□□□□□ -0.47
VPS33B-205ENST00000556096 TMEM252Q8N6L7 170 aa12.09□□□□□ -0.47
VPS33B-205ENST00000556096 H1FXQ92522 213 aaKnown RBP12.09□□□□□ -0.47
VPS33B-205ENST00000556096 LEAP2Q969E1 77 aa12.09□□□□□ -0.47
VPS33B-205ENST00000556096 BSCL2Q96G97 398 aaPredicted RBP12.09□□□□□ -0.47
VPS33B-205ENST00000556096 ADTRPQ96IZ2 230 aa12.09□□□□□ -0.47
VPS33B-205ENST00000556096 ARV1Q9H2C2 271 aa12.09□□□□□ -0.47
VPS33B-205ENST00000556096 PTPN13Q12923 2485 aa12.09□□□□□ -0.47
VPS33B-205ENST00000556096 HECTD1Q9ULT8 2610 aa12.09□□□□□ -0.47
VPS33B-205ENST00000556096 ABCA4P78363 2273 aa12.09□□□□□ -0.47
VPS33B-205ENST00000556096 PKDREJQ9NTG1 2253 aa12.09□□□□□ -0.47
VPS33B-205ENST00000556096 TRBV23-1A0A0A0MS06 115 aa12.08□□□□□ -0.47
VPS33B-205ENST00000556096 BORCS7-ASMTA0A0B4J1R7 106 aa12.08□□□□□ -0.47
VPS33B-205ENST00000556096 IGSF23A1L1A6 192 aa12.08□□□□□ -0.47
VPS33B-205ENST00000556096 LYNX1G3V0Z9 82 aa12.08□□□□□ -0.47
VPS33B-205ENST00000556096 FGF16O43320 207 aa12.08□□□□□ -0.47
VPS33B-205ENST00000556096 SYNGR2O43760 224 aa12.08□□□□□ -0.47
VPS33B-205ENST00000556096 SOD3P08294 240 aa12.08□□□□□ -0.47
VPS33B-205ENST00000556096 LYNX1P0DP58 116 aa12.08□□□□□ -0.47
VPS33B-205ENST00000556096 CAV2P51636 162 aa12.08□□□□□ -0.47
VPS33B-205ENST00000556096 LINC00205P59089 165 aa12.08□□□□□ -0.47
VPS33B-205ENST00000556096 TAS2R30P59541 319 aa12.08□□□□□ -0.47
VPS33B-205ENST00000556096 RPL23AP62750 156 aaKnown RBP12.08□□□□□ -0.47
VPS33B-205ENST00000556096 BAXQ07812 192 aa12.08□□□□□ -0.47
VPS33B-205ENST00000556096 MIDNQ504T8 468 aa12.08□□□□□ -0.47
VPS33B-205ENST00000556096 ZNF787Q6DD87 383 aa12.08□□□□□ -0.47
VPS33B-205ENST00000556096 DDB2Q92466 427 aa12.08□□□□□ -0.47
VPS33B-205ENST00000556096 RAB39BQ96DA2 213 aa12.08□□□□□ -0.47
VPS33B-205ENST00000556096 ZNF251Q9BRH9 671 aa12.08□□□□□ -0.47
VPS33B-205ENST00000556096 CTNNBIP1Q9NSA3 81 aaPredicted RBP12.08□□□□□ -0.47
VPS33B-205ENST00000556096 WSB1Q9Y6I7 421 aa12.08□□□□□ -0.47
VPS33B-205ENST00000556096 SAA2-SAA4A0A096LPE2 208 aa12.08□□□□□ -0.48
VPS33B-205ENST00000556096 GPR37O15354 613 aa12.08□□□□□ -0.48
VPS33B-205ENST00000556096 FCGR3BO75015 233 aa12.08□□□□□ -0.48
VPS33B-205ENST00000556096 SAA2P0DJI9 122 aaPredicted RBP12.08□□□□□ -0.48
VPS33B-205ENST00000556096 COX6B1P14854 86 aa12.08□□□□□ -0.48
VPS33B-205ENST00000556096 CCL3L1P16619 93 aa12.08□□□□□ -0.48
VPS33B-205ENST00000556096 THBS3P49746 956 aa12.08□□□□□ -0.48
VPS33B-205ENST00000556096 ARHGDIBP52566 201 aa12.08□□□□□ -0.48
VPS33B-205ENST00000556096 CLEC9AQ6UXN8 241 aa12.08□□□□□ -0.48
VPS33B-205ENST00000556096 C1orf229Q6ZS94 237 aaPredicted RBP12.08□□□□□ -0.48
VPS33B-205ENST00000556096 H2BFWTQ7Z2G1 175 aa12.08□□□□□ -0.48
VPS33B-205ENST00000556096 RNF141Q8WVD5 230 aa12.08□□□□□ -0.48
VPS33B-205ENST00000556096 SMIM8Q96KF7 97 aa12.08□□□□□ -0.48
VPS33B-205ENST00000556096 CXorf58Q96LI9 332 aa12.08□□□□□ -0.48
VPS33B-205ENST00000556096 S1PR3Q99500 378 aa12.08□□□□□ -0.48
VPS33B-205ENST00000556096 SMIM3Q9BZL3 60 aa12.08□□□□□ -0.48
VPS33B-205ENST00000556096 WFDC1Q9HC57 220 aa12.08□□□□□ -0.48
VPS33B-205ENST00000556096 ARID1AO14497 2285 aa12.07□□□□□ -0.48
Retrieved 100 of 20,778 RNA–protein pairs in 27.3 ms