RNA–Protein interactions for RNA: ENST00000552909.5

LIMA1-216, Transcript of LIM domain and actin binding 1, humanhuman

APPRIS ALT2 TSL 1 (best) BASIC

Gene LIMA1, Length 2,162 nt, Biotype protein coding, Subcellular localisation Cytosol, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
LIMA1-216ENST00000552909 PCGF1Q9BSM1 259 aa6.48□□□□□ -1.37
LIMA1-216ENST00000552909 SF3B5Q9BWJ5 86 aaKnown RBP6.48□□□□□ -1.37
LIMA1-216ENST00000552909 GPR35Q9HC97 309 aa6.48□□□□□ -1.37
LIMA1-216ENST00000552909 MSL2Q9HCI7 577 aa6.48□□□□□ -1.37
LIMA1-216ENST00000552909 NAT8Q9UHE5 227 aa6.48□□□□□ -1.37
LIMA1-216ENST00000552909 C16orf97H3BN30 126 aa6.48□□□□□ -1.37
LIMA1-216ENST00000552909 HRASP01112 189 aa6.48□□□□□ -1.37
LIMA1-216ENST00000552909 GZMHP20718 246 aa6.48□□□□□ -1.37
LIMA1-216ENST00000552909 WNT5AP41221 380 aa6.48□□□□□ -1.37
LIMA1-216ENST00000552909 DYNLT3P51808 116 aa6.48□□□□□ -1.37
LIMA1-216ENST00000552909 SELENOTP62341 195 aa6.48□□□□□ -1.37
LIMA1-216ENST00000552909 RUNX1Q01196 453 aa6.48□□□□□ -1.37
LIMA1-216ENST00000552909 IL24Q13007 206 aa6.48□□□□□ -1.37
LIMA1-216ENST00000552909 TMEM183BQ1AE95 376 aa6.48□□□□□ -1.37
LIMA1-216ENST00000552909 MPV17LQ2QL34 196 aa6.48□□□□□ -1.37
LIMA1-216ENST00000552909 TSPO2Q5TGU0 170 aa6.48□□□□□ -1.37
LIMA1-216ENST00000552909 TOMM20LQ6UXN7 152 aa6.48□□□□□ -1.37
LIMA1-216ENST00000552909 LRP11Q86VZ4 500 aa6.48□□□□□ -1.37
LIMA1-216ENST00000552909 CXorf67Q86X51 503 aaPredicted RBP6.48□□□□□ -1.37
LIMA1-216ENST00000552909 TMEM252Q8N6L7 170 aa6.48□□□□□ -1.37
LIMA1-216ENST00000552909 RNF133Q8WVZ7 376 aa6.48□□□□□ -1.37
LIMA1-216ENST00000552909 SDSLQ96GA7 329 aa6.48□□□□□ -1.37
LIMA1-216ENST00000552909 LIME1Q9H400 295 aa6.48□□□□□ -1.37
LIMA1-216ENST00000552909 C11orf1Q9H5F2 150 aa6.48□□□□□ -1.37
LIMA1-216ENST00000552909 GP6Q9HCN6 339 aa6.48□□□□□ -1.37
LIMA1-216ENST00000552909 LYRM2Q9NU23 88 aaPredicted RBP6.48□□□□□ -1.37
LIMA1-216ENST00000552909 ELOVL5Q9NYP7 299 aa6.48□□□□□ -1.37
LIMA1-216ENST00000552909 TEP1Q99973 2627 aaKnown RBP6.47□□□□□ -1.37
LIMA1-216ENST00000552909 ITPR3Q14573 2671 aa6.47□□□□□ -1.37
LIMA1-216ENST00000552909 A0A1W2PPR1 153 aa6.47□□□□□ -1.37
LIMA1-216ENST00000552909 MAP1LC3B2A6NCE7 125 aa6.47□□□□□ -1.37
LIMA1-216ENST00000552909 FOXI3A8MTJ6 420 aaPredicted RBP6.47□□□□□ -1.37
LIMA1-216ENST00000552909 IFNL4K9M1U5 179 aa6.47□□□□□ -1.37
LIMA1-216ENST00000552909 THBDP07204 575 aa6.47□□□□□ -1.37
LIMA1-216ENST00000552909 TMEM225BP0DP42 221 aa6.47□□□□□ -1.37
LIMA1-216ENST00000552909 CDAP32320 146 aa6.47□□□□□ -1.37
LIMA1-216ENST00000552909 NKX2-1P43699 371 aaPredicted RBP6.47□□□□□ -1.37
LIMA1-216ENST00000552909 TFPI2P48307 235 aa6.47□□□□□ -1.37
LIMA1-216ENST00000552909 MTCP1P56278 107 aa6.47□□□□□ -1.37
LIMA1-216ENST00000552909 ENDOGQ14249 297 aaKnown RBP6.47□□□□□ -1.37
LIMA1-216ENST00000552909 HIST3H3Q16695 136 aa6.47□□□□□ -1.37
LIMA1-216ENST00000552909 PHYHD1Q5SRE7 291 aa6.47□□□□□ -1.37
LIMA1-216ENST00000552909 AAED1Q7RTV5 226 aa6.47□□□□□ -1.37
LIMA1-216ENST00000552909 OR5L1Q8NGL2 311 aa6.47□□□□□ -1.37
LIMA1-216ENST00000552909 OR51E1Q8TCB6 317 aa6.47□□□□□ -1.37
LIMA1-216ENST00000552909 FAM222BQ8WU58 562 aa6.47□□□□□ -1.37
LIMA1-216ENST00000552909 MSI2Q96DH6 328 aaKnown RBP6.47□□□□□ -1.37
LIMA1-216ENST00000552909 SLAMF6Q96DU3 332 aa6.47□□□□□ -1.37
LIMA1-216ENST00000552909 TP53RKQ96S44 253 aa6.47□□□□□ -1.37
LIMA1-216ENST00000552909 IMMP2LQ96T52 175 aa6.47□□□□□ -1.37
LIMA1-216ENST00000552909 MAP1LC3BQ9GZQ8 125 aa6.47□□□□□ -1.37
LIMA1-216ENST00000552909 NCOR1P1Q9H4R4 102 aa6.47□□□□□ -1.37
LIMA1-216ENST00000552909 ZNF665Q9H7R5 613 aa6.47□□□□□ -1.37
LIMA1-216ENST00000552909 OR6C3Q9NZP0 311 aa6.47□□□□□ -1.37
LIMA1-216ENST00000552909 ANXA10Q9UJ72 324 aa6.47□□□□□ -1.37
LIMA1-216ENST00000552909 NKX6-3A6NJ46 265 aa6.47□□□□□ -1.37
LIMA1-216ENST00000552909 PHF1O43189 567 aaPredicted RBP6.47□□□□□ -1.37
LIMA1-216ENST00000552909 SSSCA1O60232 199 aa6.47□□□□□ -1.37
LIMA1-216ENST00000552909 MRPL33O75394 65 aaKnown RBP6.47□□□□□ -1.37
LIMA1-216ENST00000552909 LYZL6O75951 148 aa6.47□□□□□ -1.37
LIMA1-216ENST00000552909 CST7O76096 145 aa6.47□□□□□ -1.37
LIMA1-216ENST00000552909 CDS2O95674 445 aa6.47□□□□□ -1.37
LIMA1-216ENST00000552909 IFNA1P01562 189 aa6.47□□□□□ -1.37
LIMA1-216ENST00000552909 IGHV1-2P23083 117 aa6.47□□□□□ -1.37
LIMA1-216ENST00000552909 PTTG1IPP53801 180 aa6.47□□□□□ -1.37
LIMA1-216ENST00000552909 KLF3P57682 345 aaPredicted RBP6.47□□□□□ -1.37
LIMA1-216ENST00000552909 TAS2R30P59541 319 aa6.47□□□□□ -1.37
LIMA1-216ENST00000552909 FXYD4P59646 89 aa6.47□□□□□ -1.37
LIMA1-216ENST00000552909 BAXQ07812 192 aa6.47□□□□□ -1.37
LIMA1-216ENST00000552909 BSXQ3C1V8 233 aa6.47□□□□□ -1.37
LIMA1-216ENST00000552909 PHLDA2Q53GA4 152 aa6.47□□□□□ -1.37
LIMA1-216ENST00000552909 SLC25A47Q6Q0C1 308 aa6.47□□□□□ -1.37
LIMA1-216ENST00000552909 CYP2G1PQ6ZSU1 146 aa6.47□□□□□ -1.37
LIMA1-216ENST00000552909 Q6ZT83 130 aa6.47□□□□□ -1.37
LIMA1-216ENST00000552909 TMEM217Q8N7C4 229 aa6.47□□□□□ -1.37
LIMA1-216ENST00000552909 OR10S1Q8NGN2 331 aa6.47□□□□□ -1.37
LIMA1-216ENST00000552909 C11orf40Q8WZ69 217 aa6.47□□□□□ -1.37
LIMA1-216ENST00000552909 TMEM54Q969K7 222 aa6.47□□□□□ -1.37
LIMA1-216ENST00000552909 SLC35E1Q96K37 410 aa6.47□□□□□ -1.37
LIMA1-216ENST00000552909 SMIM7Q9BQ49 75 aa6.47□□□□□ -1.37
LIMA1-216ENST00000552909 AGMATQ9BSE5 352 aa6.47□□□□□ -1.37
LIMA1-216ENST00000552909 GSX1Q9H4S2 264 aaPredicted RBP6.47□□□□□ -1.37
LIMA1-216ENST00000552909 SLC2A9Q9NRM0 540 aa6.47□□□□□ -1.37
LIMA1-216ENST00000552909 NECAP2Q9NVZ3 263 aa6.47□□□□□ -1.37
LIMA1-216ENST00000552909 AURKAIP1Q9NWT8 199 aaPredicted RBP6.47□□□□□ -1.37
LIMA1-216ENST00000552909 HIVEP1P15822 2718 aa6.46□□□□□ -1.37
LIMA1-216ENST00000552909 PLCE1Q9P212 2302 aa6.46□□□□□ -1.37
LIMA1-216ENST00000552909 ZNF850A8MQ14 1090 aa6.46□□□□□ -1.38
LIMA1-216ENST00000552909 CEBPZOSA8MTT3 80 aa6.46□□□□□ -1.38
LIMA1-216ENST00000552909 K7EP13 123 aa6.46□□□□□ -1.38
LIMA1-216ENST00000552909 TYMSP04818 313 aa6.46□□□□□ -1.38
LIMA1-216ENST00000552909 GUCA1AP43080 201 aaPredicted RBP6.46□□□□□ -1.38
LIMA1-216ENST00000552909 ZNF92Q03936 586 aa6.46□□□□□ -1.38
LIMA1-216ENST00000552909 DAZAP2Q15038 168 aaPredicted RBP6.46□□□□□ -1.38
LIMA1-216ENST00000552909 KCNMB1Q16558 191 aa6.46□□□□□ -1.38
LIMA1-216ENST00000552909 CLEC12BQ2HXU8 276 aa6.46□□□□□ -1.38
LIMA1-216ENST00000552909 C9orf135Q5VTT2 229 aa6.46□□□□□ -1.38
LIMA1-216ENST00000552909 TEX43Q6ZNM6 134 aa6.46□□□□□ -1.38
LIMA1-216ENST00000552909 ABHD12BQ7Z5M8 362 aaPredicted RBP6.46□□□□□ -1.38
LIMA1-216ENST00000552909 CENPVQ7Z7K6 275 aaPredicted RBP6.46□□□□□ -1.38
Retrieved 100 of 20,778 RNA–protein pairs in 31.5 ms