RNA–Protein interactions for RNA: ENST00000552720.5

LIMA1-213, Transcript of LIM domain and actin binding 1, humanhuman

TSL 1 (best)

Gene LIMA1, Length 2,457 nt, Biotype nonsense mediated decay, Subcellular localisation Cytosol, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
LIMA1-213ENST00000552720 LRRC30A6NM36 301 aa6.27□□□□□ -1.4
LIMA1-213ENST00000552720 B4DEV8 164 aa6.27□□□□□ -1.4
LIMA1-213ENST00000552720 SEC14L6B5MCN3 397 aa6.27□□□□□ -1.4
LIMA1-213ENST00000552720 C21orf140B9A014 251 aa6.27□□□□□ -1.4
LIMA1-213ENST00000552720 PTBP3O95758 552 aaKnown RBP6.27□□□□□ -1.4
LIMA1-213ENST00000552720 IGHV3-13P01766 116 aa6.27□□□□□ -1.4
LIMA1-213ENST00000552720 IGHV3-7P01780 117 aa6.27□□□□□ -1.4
LIMA1-213ENST00000552720 P0C879 139 aa6.27□□□□□ -1.4
LIMA1-213ENST00000552720 CD59P13987 128 aa6.27□□□□□ -1.4
LIMA1-213ENST00000552720 GZMHP20718 246 aa6.27□□□□□ -1.4
LIMA1-213ENST00000552720 FGF7P21781 194 aa6.27□□□□□ -1.4
LIMA1-213ENST00000552720 TUBG1P23258 451 aa6.27□□□□□ -1.4
LIMA1-213ENST00000552720 GABRA2P47869 451 aa6.27□□□□□ -1.4
LIMA1-213ENST00000552720 MEF2BQ02080 365 aaPredicted RBP6.27□□□□□ -1.4
LIMA1-213ENST00000552720 PNRC1Q12796 327 aaPredicted RBP6.27□□□□□ -1.4
LIMA1-213ENST00000552720 SRSF6Q13247 344 aaKnown RBP6.27□□□□□ -1.4
LIMA1-213ENST00000552720 EIF4EBP1Q13541 118 aaPredicted RBP6.27□□□□□ -1.4
LIMA1-213ENST00000552720 C21orf62-AS1Q17RA5 79 aa6.27□□□□□ -1.4
LIMA1-213ENST00000552720 C16orf82Q7Z2V1 217 aa6.27□□□□□ -1.4
LIMA1-213ENST00000552720 Q8IYB0 196 aa6.27□□□□□ -1.4
LIMA1-213ENST00000552720 GALMQ96C23 342 aa6.27□□□□□ -1.4
LIMA1-213ENST00000552720 PRDM13Q9H4Q3 707 aa6.27□□□□□ -1.4
LIMA1-213ENST00000552720 MSL2Q9HCI7 577 aa6.27□□□□□ -1.4
LIMA1-213ENST00000552720 TACC2O95359 2948 aa6.27□□□□□ -1.41
LIMA1-213ENST00000552720 EP300Q09472 2414 aaPredicted RBP6.27□□□□□ -1.41
LIMA1-213ENST00000552720 CNOT1A5YKK6 2376 aaKnown RBP6.27□□□□□ -1.41
LIMA1-213ENST00000552720 TMEM30CPA0ZSE6 113 aa6.27□□□□□ -1.41
LIMA1-213ENST00000552720 ST8SIA5O15466 376 aa6.27□□□□□ -1.41
LIMA1-213ENST00000552720 NDUFS6O75380 124 aaKnown RBP6.27□□□□□ -1.41
LIMA1-213ENST00000552720 EGR1P18146 543 aa6.27□□□□□ -1.41
LIMA1-213ENST00000552720 UBE2NP61088 152 aaKnown RBP6.27□□□□□ -1.41
LIMA1-213ENST00000552720 RPL23P62829 140 aaKnown RBP6.27□□□□□ -1.41
LIMA1-213ENST00000552720 GCSAMLQ5JQS6 135 aa6.27□□□□□ -1.41
LIMA1-213ENST00000552720 NCR3LG1Q68D85 454 aa6.27□□□□□ -1.41
LIMA1-213ENST00000552720 OR10G9Q8NGN4 311 aa6.27□□□□□ -1.41
LIMA1-213ENST00000552720 OR10G7Q8NGN6 311 aa6.27□□□□□ -1.41
LIMA1-213ENST00000552720 OR13A1Q8NGR1 328 aa6.27□□□□□ -1.41
LIMA1-213ENST00000552720 OR4F5Q8NH21 305 aa6.27□□□□□ -1.41
LIMA1-213ENST00000552720 RHOVQ96L33 236 aa6.27□□□□□ -1.41
LIMA1-213ENST00000552720 OR4F4Q96R69 305 aa6.27□□□□□ -1.41
LIMA1-213ENST00000552720 P2RX4Q99571 388 aa6.27□□□□□ -1.41
LIMA1-213ENST00000552720 AURKAIP1Q9NWT8 199 aaPredicted RBP6.27□□□□□ -1.41
LIMA1-213ENST00000552720 GAB2Q9UQC2 676 aa6.27□□□□□ -1.41
LIMA1-213ENST00000552720 DMRT1Q9Y5R6 373 aa6.27□□□□□ -1.41
LIMA1-213ENST00000552720 CEP250Q9BV73 2442 aa6.27□□□□□ -1.41
LIMA1-213ENST00000552720 ARFGEF3Q5TH69 2177 aa6.27□□□□□ -1.41
LIMA1-213ENST00000552720 AKAP13Q12802 2813 aa6.27□□□□□ -1.41
LIMA1-213ENST00000552720 PLCE1Q9P212 2302 aa6.27□□□□□ -1.41
LIMA1-213ENST00000552720 IQCF6A8MYZ5 107 aa6.26□□□□□ -1.41
LIMA1-213ENST00000552720 CDX4O14627 284 aaPredicted RBP6.26□□□□□ -1.41
LIMA1-213ENST00000552720 RBMXL2O75526 392 aaKnown RBP6.26□□□□□ -1.41
LIMA1-213ENST00000552720 RAC2P15153 192 aa6.26□□□□□ -1.41
LIMA1-213ENST00000552720 FABP6P51161 128 aa6.26□□□□□ -1.41
LIMA1-213ENST00000552720 GAMTQ14353 236 aa6.26□□□□□ -1.41
LIMA1-213ENST00000552720 GABRA6Q16445 453 aa6.26□□□□□ -1.41
LIMA1-213ENST00000552720 PRSS8Q16651 343 aa6.26□□□□□ -1.41
LIMA1-213ENST00000552720 Q3ZCU0 254 aa6.26□□□□□ -1.41
LIMA1-213ENST00000552720 FFAR4Q5NUL3 377 aa6.26□□□□□ -1.41
LIMA1-213ENST00000552720 ALKBH2Q6NS38 261 aa6.26□□□□□ -1.41
LIMA1-213ENST00000552720 UNQ6494/PRO21346Q6UXR6 183 aa6.26□□□□□ -1.41
LIMA1-213ENST00000552720 CNEP1R1Q8N9A8 125 aa6.26□□□□□ -1.41
LIMA1-213ENST00000552720 OR5T1Q8NG75 326 aa6.26□□□□□ -1.41
LIMA1-213ENST00000552720 OR4X1Q8NH49 305 aa6.26□□□□□ -1.41
LIMA1-213ENST00000552720 DTD1Q8TEA8 209 aa6.26□□□□□ -1.41
LIMA1-213ENST00000552720 PINX1Q96BK5 328 aaKnown RBP6.26□□□□□ -1.41
LIMA1-213ENST00000552720 PFDN5Q99471 154 aa6.26□□□□□ -1.41
LIMA1-213ENST00000552720 PARLQ9H300 379 aa6.26□□□□□ -1.41
LIMA1-213ENST00000552720 HES4Q9HCC6 221 aa6.26□□□□□ -1.41
LIMA1-213ENST00000552720 TMEM242Q9NWH2 141 aa6.26□□□□□ -1.41
LIMA1-213ENST00000552720 KCNIP1Q9NZI2 227 aa6.26□□□□□ -1.41
LIMA1-213ENST00000552720 TNCP24821 2201 aa6.26□□□□□ -1.41
LIMA1-213ENST00000552720 TRBV24-1A0A075B6N3 115 aa6.26□□□□□ -1.41
LIMA1-213ENST00000552720 RNF212BA8MTL3 300 aa6.26□□□□□ -1.41
LIMA1-213ENST00000552720 C1QTNF9BB2RNN3 333 aa6.26□□□□□ -1.41
LIMA1-213ENST00000552720 FAM90A26D6RGX4 464 aa6.26□□□□□ -1.41
LIMA1-213ENST00000552720 KBTBD11O94819 623 aa6.26□□□□□ -1.41
LIMA1-213ENST00000552720 COL10A1Q03692 680 aa6.26□□□□□ -1.41
LIMA1-213ENST00000552720 TMEM241Q24JQ0 296 aa6.26□□□□□ -1.41
LIMA1-213ENST00000552720 HES3Q5TGS1 186 aa6.26□□□□□ -1.41
LIMA1-213ENST00000552720 VWA1Q6PCB0 445 aa6.26□□□□□ -1.41
LIMA1-213ENST00000552720 WDR82Q6UXN9 313 aa6.26□□□□□ -1.41
LIMA1-213ENST00000552720 CYP2G1PQ6ZSU1 146 aa6.26□□□□□ -1.41
LIMA1-213ENST00000552720 FAM169BQ8N8A8 192 aa6.26□□□□□ -1.41
LIMA1-213ENST00000552720 OR13D1Q8NGV5 346 aa6.26□□□□□ -1.41
LIMA1-213ENST00000552720 RAB24Q969Q5 203 aa6.26□□□□□ -1.41
LIMA1-213ENST00000552720 TRIB1Q96RU8 372 aa6.26□□□□□ -1.41
LIMA1-213ENST00000552720 NPCDR1Q9BY65 106 aa6.26□□□□□ -1.41
LIMA1-213ENST00000552720 FAM234AQ9H0X4 552 aa6.26□□□□□ -1.41
LIMA1-213ENST00000552720 PRO1933Q9H354 126 aa6.26□□□□□ -1.41
LIMA1-213ENST00000552720 CTNNBIP1Q9NSA3 81 aaPredicted RBP6.26□□□□□ -1.41
LIMA1-213ENST00000552720 NAT8Q9UHE5 227 aa6.26□□□□□ -1.41
LIMA1-213ENST00000552720 PSG11Q9UQ72 335 aa6.26□□□□□ -1.41
LIMA1-213ENST00000552720 LAMP3Q9UQV4 416 aa6.26□□□□□ -1.41
LIMA1-213ENST00000552720 TANC2Q9HCD6 1990 aa6.26□□□□□ -1.41
LIMA1-213ENST00000552720 MAP1BP46821 2468 aaKnown RBP6.26□□□□□ -1.41
LIMA1-213ENST00000552720 RAI1Q7Z5J4 1906 aaPredicted RBP6.25□□□□□ -1.41
LIMA1-213ENST00000552720 PIGBOS1A0A0B4J2F0 54 aa6.25□□□□□ -1.41
LIMA1-213ENST00000552720 OOEPA6NGQ2 149 aa6.25□□□□□ -1.41
LIMA1-213ENST00000552720 PAGE4O60829 102 aa6.25□□□□□ -1.41
LIMA1-213ENST00000552720 PROP1O75360 226 aa6.25□□□□□ -1.41
Retrieved 100 of 20,778 RNA–protein pairs in 35.4 ms