RNA–Protein interactions for RNA: ENST00000552045.1

LIMA1-210, Transcript of LIM domain and actin binding 1, humanhuman

TSL 2

Gene LIMA1, Length 386 nt, Biotype retained intron, Subcellular localisation Cytosol, Ribosome .

Download Table  
RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
LIMA1-210ENST00000552045 TSPAN31Q12999 210 aa3.36□□□□□ -1.87
LIMA1-210ENST00000552045 IMPG1Q17R60 797 aa3.36□□□□□ -1.87
LIMA1-210ENST00000552045 LGALSLQ3ZCW2 172 aaPredicted RBP3.36□□□□□ -1.87
LIMA1-210ENST00000552045 NAA40Q86UY6 237 aa3.36□□□□□ -1.87
LIMA1-210ENST00000552045 EEF1AKMT1Q8WVE0 214 aa3.36□□□□□ -1.87
LIMA1-210ENST00000552045 HIST1H2BAQ96A08 127 aa3.36□□□□□ -1.87
LIMA1-210ENST00000552045 ABHD14BQ96IU4 210 aa3.36□□□□□ -1.87
LIMA1-210ENST00000552045 DNAJC12Q9UKB3 198 aa3.36□□□□□ -1.87
LIMA1-210ENST00000552045 SAMD9Q5K651 1589 aa3.36□□□□□ -1.87
LIMA1-210ENST00000552045 TET3O43151 1660 aa3.36□□□□□ -1.87
LIMA1-210ENST00000552045 SIPA1L2Q9P2F8 1722 aaPredicted RBP3.36□□□□□ -1.87
LIMA1-210ENST00000552045 CASZ1Q86V15 1759 aa3.35□□□□□ -1.87
LIMA1-210ENST00000552045 KIDINS220Q9ULH0 1771 aa3.35□□□□□ -1.87
LIMA1-210ENST00000552045 PLXNC1O60486 1568 aa3.35□□□□□ -1.87
LIMA1-210ENST00000552045 IGKV1D-37A0A075B6S9 117 aa3.35□□□□□ -1.87
LIMA1-210ENST00000552045 C4orf51C9J302 202 aa3.35□□□□□ -1.87
LIMA1-210ENST00000552045 OR4A8P0C604 315 aa3.35□□□□□ -1.87
LIMA1-210ENST00000552045 CDK2P24941 298 aa3.35□□□□□ -1.87
LIMA1-210ENST00000552045 OR1E2P47887 323 aa3.35□□□□□ -1.87
LIMA1-210ENST00000552045 DHRS2Q13268 280 aa3.35□□□□□ -1.87
LIMA1-210ENST00000552045 IHHQ14623 411 aa3.35□□□□□ -1.87
LIMA1-210ENST00000552045 EBPQ15125 230 aaKnown RBP3.35□□□□□ -1.87
LIMA1-210ENST00000552045 IGFBP7Q16270 282 aa3.35□□□□□ -1.87
LIMA1-210ENST00000552045 COMMD7Q86VX2 200 aa3.35□□□□□ -1.87
LIMA1-210ENST00000552045 ZNF721Q8TF20 911 aa3.35□□□□□ -1.87
LIMA1-210ENST00000552045 MRPS26Q9BYN8 205 aaKnown RBP3.35□□□□□ -1.87
LIMA1-210ENST00000552045 DUSP21Q9H596 190 aa3.35□□□□□ -1.87
LIMA1-210ENST00000552045 POLR1DQ9Y2S0 133 aa3.35□□□□□ -1.87
LIMA1-210ENST00000552045 WASHC3Q9Y3C0 194 aa3.35□□□□□ -1.87
LIMA1-210ENST00000552045 MRPS16Q9Y3D3 137 aaKnown RBP3.35□□□□□ -1.87
LIMA1-210ENST00000552045 R4GN34 69 aa3.35□□□□□ -1.87
LIMA1-210ENST00000552045 ADGRL3Q9HAR2 1447 aa3.35□□□□□ -1.87
LIMA1-210ENST00000552045 ERVK-7P63135 1459 aa3.35□□□□□ -1.87
LIMA1-210ENST00000552045 ACOX3O15254 700 aa3.34□□□□□ -1.87
LIMA1-210ENST00000552045 STK16O75716 305 aa3.34□□□□□ -1.87
LIMA1-210ENST00000552045 IGLV3-27P01718 113 aa3.34□□□□□ -1.87
LIMA1-210ENST00000552045 CALB1P05937 261 aa3.34□□□□□ -1.87
LIMA1-210ENST00000552045 HERVK_113P63121 156 aa3.34□□□□□ -1.87
LIMA1-210ENST00000552045 SLC35A2P78381 396 aa3.34□□□□□ -1.87
LIMA1-210ENST00000552045 FABP5Q01469 135 aa3.34□□□□□ -1.87
LIMA1-210ENST00000552045 OR8G1Q15617 311 aa3.34□□□□□ -1.87
LIMA1-210ENST00000552045 ACSBG2Q5FVE4 666 aa3.34□□□□□ -1.87
LIMA1-210ENST00000552045 LPCAT4Q643R3 524 aa3.34□□□□□ -1.87
LIMA1-210ENST00000552045 TMEM161BQ8NDZ6 487 aa3.34□□□□□ -1.87
LIMA1-210ENST00000552045 OR2V1Q8NHB1 315 aa3.34□□□□□ -1.87
LIMA1-210ENST00000552045 GUCA1BQ9UMX6 200 aa3.34□□□□□ -1.87
LIMA1-210ENST00000552045 FIS1Q9Y3D6 152 aa3.34□□□□□ -1.87
LIMA1-210ENST00000552045 ALG5Q9Y673 324 aa3.34□□□□□ -1.87
LIMA1-210ENST00000552045 CLIP1P30622 1438 aa3.34□□□□□ -1.88
LIMA1-210ENST00000552045 SYCP2Q9BX26 1530 aa3.34□□□□□ -1.88
LIMA1-210ENST00000552045 PRR14LQ5THK1 2151 aa3.34□□□□□ -1.88
LIMA1-210ENST00000552045 MYO5CQ9NQX4 1742 aa3.33□□□□□ -1.88
LIMA1-210ENST00000552045 TRAV8-1A0A0A6YYK1 113 aa3.33□□□□□ -1.88
LIMA1-210ENST00000552045 MRASO14807 208 aa3.33□□□□□ -1.88
LIMA1-210ENST00000552045 DEDDO75618 318 aa3.33□□□□□ -1.88
LIMA1-210ENST00000552045 SERPINA6P08185 405 aa3.33□□□□□ -1.88
LIMA1-210ENST00000552045 IL3P08700 152 aa3.33□□□□□ -1.88
LIMA1-210ENST00000552045 RPS24P62847 133 aaKnown RBP3.33□□□□□ -1.88
LIMA1-210ENST00000552045 SLC9A3R2Q15599 337 aa3.33□□□□□ -1.88
LIMA1-210ENST00000552045 KRTAP25-1Q3LHN0 102 aa3.33□□□□□ -1.88
LIMA1-210ENST00000552045 PYCR3Q53H96 274 aa3.33□□□□□ -1.88
LIMA1-210ENST00000552045 N4BP2L1Q5TBK1 243 aaPredicted RBP3.33□□□□□ -1.88
LIMA1-210ENST00000552045 AMMECR1LQ6DCA0 310 aa3.33□□□□□ -1.88
LIMA1-210ENST00000552045 RASSF6Q6ZTQ3 369 aa3.33□□□□□ -1.88
LIMA1-210ENST00000552045 ZFAND2AQ8N6M9 145 aa3.33□□□□□ -1.88
LIMA1-210ENST00000552045 CD200R1Q8TD46 325 aa3.33□□□□□ -1.88
LIMA1-210ENST00000552045 Q8WTZ3 238 aa3.33□□□□□ -1.88
LIMA1-210ENST00000552045 DKKL1Q9UK85 242 aa3.33□□□□□ -1.88
LIMA1-210ENST00000552045 PKD1L2Q7Z442 2459 aa3.33□□□□□ -1.88
LIMA1-210ENST00000552045 C5orf49A4QMS7 147 aa3.32□□□□□ -1.88
LIMA1-210ENST00000552045 VGLL3A8MV65 326 aa3.32□□□□□ -1.88
LIMA1-210ENST00000552045 GGTLC3B5MD39 225 aa3.32□□□□□ -1.88
LIMA1-210ENST00000552045 M0R036 132 aa3.32□□□□□ -1.88
LIMA1-210ENST00000552045 SLC25A20O43772 301 aa3.32□□□□□ -1.88
LIMA1-210ENST00000552045 IGLV3-19P01714 112 aa3.32□□□□□ -1.88
LIMA1-210ENST00000552045 CD36P16671 472 aa3.32□□□□□ -1.88
LIMA1-210ENST00000552045 ZNF708P17019 499 aa3.32□□□□□ -1.88
LIMA1-210ENST00000552045 ZNF7P17097 686 aaPredicted RBP3.32□□□□□ -1.88
LIMA1-210ENST00000552045 PPP1CCP36873 323 aaKnown RBP3.32□□□□□ -1.88
LIMA1-210ENST00000552045 HLA-DRB3P79483 266 aa3.32□□□□□ -1.88
LIMA1-210ENST00000552045 CLVS2Q5SYC1 327 aa3.32□□□□□ -1.88
LIMA1-210ENST00000552045 ZNF567Q8N184 647 aa3.32□□□□□ -1.88
LIMA1-210ENST00000552045 EIF4E3Q8N5X7 224 aaKnown RBP3.32□□□□□ -1.88
LIMA1-210ENST00000552045 CCDC112Q8NEF3 446 aa3.32□□□□□ -1.88
LIMA1-210ENST00000552045 ASF1BQ9NVP2 202 aa3.32□□□□□ -1.88
LIMA1-210ENST00000552045 C3orf18Q9UK00 162 aa3.32□□□□□ -1.88
LIMA1-210ENST00000552045 C10orf71Q711Q0 1435 aa3.32□□□□□ -1.88
LIMA1-210ENST00000552045 C1orf167Q5SNV9 1468 aa3.32□□□□□ -1.88
LIMA1-210ENST00000552045 UBR1Q8IWV7 1749 aa3.32□□□□□ -1.88
LIMA1-210ENST00000552045 SEC16AO15027 2179 aa3.32□□□□□ -1.88
LIMA1-210ENST00000552045 NAV1Q8NEY1 1877 aa3.31□□□□□ -1.88
LIMA1-210ENST00000552045 ARHGEF28Q8N1W1 1705 aaKnown RBP3.31□□□□□ -1.88
LIMA1-210ENST00000552045 CROCC2H7BZ55 1655 aa3.31□□□□□ -1.88
LIMA1-210ENST00000552045 CICQ96RK0 1608 aaPredicted RBP3.31□□□□□ -1.88
LIMA1-210ENST00000552045 ADGRB3O60242 1522 aa3.31□□□□□ -1.88
LIMA1-210ENST00000552045 PXDNLA1KZ92 1463 aa3.31□□□□□ -1.88
LIMA1-210ENST00000552045 SPATA31E1Q6ZUB1 1445 aa3.31□□□□□ -1.88
LIMA1-210ENST00000552045 KIF15Q9NS87 1388 aa3.31□□□□□ -1.88
LIMA1-210ENST00000552045 LINC00862A6NCI5 91 aa3.31□□□□□ -1.88
LIMA1-210ENST00000552045 DCTN3O75935 186 aa3.31□□□□□ -1.88
Retrieved 100 of 20,778 RNA–protein pairs in 35.9 ms