RNA–Protein interactions for RNA: ENST00000531924.1

VPS28-215, Transcript of VPS28, ESCRT-I subunit, humanhuman

TSL 3

Gene VPS28, Length 695 nt, Biotype retained intron, Subcellular localisation Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
VPS28-215ENST00000531924 OR4A4PQ8NGN8 299 aa11.38□□□□□ -0.59
VPS28-215ENST00000531924 RSRP1Q9BUV0 290 aa11.38□□□□□ -0.59
VPS28-215ENST00000531924 ACOT13Q9NPJ3 140 aa11.38□□□□□ -0.59
VPS28-215ENST00000531924 SLC35D1Q9NTN3 355 aa11.38□□□□□ -0.59
VPS28-215ENST00000531924 RAB22AQ9UL26 194 aa11.38□□□□□ -0.59
VPS28-215ENST00000531924 RBM7Q9Y580 266 aaKnown RBP11.38□□□□□ -0.59
VPS28-215ENST00000531924 V9GY05 133 aa11.38□□□□□ -0.59
VPS28-215ENST00000531924 A0A0G2JLM5 398 aa11.37□□□□□ -0.59
VPS28-215ENST00000531924 ANKRD65E5RJM6 399 aa11.37□□□□□ -0.59
VPS28-215ENST00000531924 BET1O15155 118 aa11.37□□□□□ -0.59
VPS28-215ENST00000531924 GADD45AP24522 165 aa11.37□□□□□ -0.59
VPS28-215ENST00000531924 AQP4P55087 323 aa11.37□□□□□ -0.59
VPS28-215ENST00000531924 TMEM50BP56557 158 aa11.37□□□□□ -0.59
VPS28-215ENST00000531924 OVCH2Q7RTZ1 564 aa11.37□□□□□ -0.59
VPS28-215ENST00000531924 ANKRD13BQ86YJ7 626 aa11.37□□□□□ -0.59
VPS28-215ENST00000531924 ZNF436-AS1Q8NC38 126 aaPredicted RBP11.37□□□□□ -0.59
VPS28-215ENST00000531924 OR5T1Q8NG75 326 aa11.37□□□□□ -0.59
VPS28-215ENST00000531924 OR10J5Q8NHC4 309 aa11.37□□□□□ -0.59
VPS28-215ENST00000531924 RAB3CQ96E17 227 aa11.37□□□□□ -0.59
VPS28-215ENST00000531924 GFI1Q99684 422 aa11.37□□□□□ -0.59
VPS28-215ENST00000531924 DUSP21Q9H596 190 aa11.37□□□□□ -0.59
VPS28-215ENST00000531924 ZMAT4Q9H898 229 aa11.37□□□□□ -0.59
VPS28-215ENST00000531924 PDCD5O14737 125 aa11.36□□□□□ -0.59
VPS28-215ENST00000531924 FABP7O15540 132 aa11.36□□□□□ -0.59
VPS28-215ENST00000531924 ZP3P21754 424 aa11.36□□□□□ -0.59
VPS28-215ENST00000531924 TALDO1P37837 337 aa11.36□□□□□ -0.59
VPS28-215ENST00000531924 LGALS7P47929 136 aa11.36□□□□□ -0.59
VPS28-215ENST00000531924 LINC00205P59089 165 aa11.36□□□□□ -0.59
VPS28-215ENST00000531924 SRSF7Q16629 238 aaKnown RBP eCLIP11.36□□□□□ -0.59
VPS28-215ENST00000531924 RTL8BQ17RB0 113 aa11.36□□□□□ -0.59
VPS28-215ENST00000531924 HES5Q5TA89 166 aa11.36□□□□□ -0.59
VPS28-215ENST00000531924 SBSPONQ8IVN8 264 aa11.36□□□□□ -0.59
VPS28-215ENST00000531924 POC5Q8NA72 575 aa11.36□□□□□ -0.59
VPS28-215ENST00000531924 RHOVQ96L33 236 aa11.36□□□□□ -0.59
VPS28-215ENST00000531924 RCHY1Q96PM5 261 aa11.36□□□□□ -0.59
VPS28-215ENST00000531924 MGLLQ99685 303 aa11.36□□□□□ -0.59
VPS28-215ENST00000531924 GINS4Q9BRT9 223 aa11.36□□□□□ -0.59
VPS28-215ENST00000531924 OR2D2Q9H210 308 aa11.36□□□□□ -0.59
VPS28-215ENST00000531924 RANGRFQ9HD47 186 aaPredicted RBP11.36□□□□□ -0.59
VPS28-215ENST00000531924 TPSG1Q9NRR2 321 aa11.36□□□□□ -0.59
VPS28-215ENST00000531924 NKX1-2Q9UD57 310 aaPredicted RBP11.36□□□□□ -0.59
VPS28-215ENST00000531924 STUB1Q9UNE7 303 aa11.36□□□□□ -0.59
VPS28-215ENST00000531924 A0A075B6Q4 140 aa11.35□□□□□ -0.59
VPS28-215ENST00000531924 IGKV1-6A0A0C4DH72 117 aa11.35□□□□□ -0.59
VPS28-215ENST00000531924 ANKRD34BA5PLL1 514 aa11.35□□□□□ -0.59
VPS28-215ENST00000531924 FOXI3A8MTJ6 420 aaPredicted RBP11.35□□□□□ -0.59
VPS28-215ENST00000531924 SHOXO15266 292 aa11.35□□□□□ -0.59
VPS28-215ENST00000531924 FRMD6-AS1P0C7T7 363 aa11.35□□□□□ -0.59
VPS28-215ENST00000531924 FABP5Q01469 135 aa11.35□□□□□ -0.59
VPS28-215ENST00000531924 TAGLNQ01995 201 aaKnown RBP11.35□□□□□ -0.59
VPS28-215ENST00000531924 PLAC9Q5JTB6 97 aa11.35□□□□□ -0.59
VPS28-215ENST00000531924 PRSS48Q7RTY5 328 aa11.35□□□□□ -0.59
VPS28-215ENST00000531924 HARBI1Q96MB7 349 aa11.35□□□□□ -0.59
VPS28-215ENST00000531924 PHB2Q99623 299 aa11.35□□□□□ -0.59
VPS28-215ENST00000531924 VCX3BQ9H321 246 aa11.35□□□□□ -0.59
VPS28-215ENST00000531924 TMEM272A0A1B0GTI8 110 aa11.34□□□□□ -0.59
VPS28-215ENST00000531924 H3BUA1 57 aa11.34□□□□□ -0.59
VPS28-215ENST00000531924 PROP1O75360 226 aa11.34□□□□□ -0.59
VPS28-215ENST00000531924 MYL9P24844 172 aa11.34□□□□□ -0.59
VPS28-215ENST00000531924 MAP2K4P45985 399 aa11.34□□□□□ -0.59
VPS28-215ENST00000531924 ARFRP1Q13795 201 aa11.34□□□□□ -0.59
VPS28-215ENST00000531924 MOGAT2Q3SYC2 334 aa11.34□□□□□ -0.59
VPS28-215ENST00000531924 TMEM68Q96MH6 324 aa11.34□□□□□ -0.59
VPS28-215ENST00000531924 CENPOQ9BU64 300 aa11.34□□□□□ -0.59
VPS28-215ENST00000531924 PALMDQ9NP74 551 aa11.34□□□□□ -0.59
VPS28-215ENST00000531924 BLOC1S6Q9UL45 172 aa11.34□□□□□ -0.59
VPS28-215ENST00000531924 RYR3Q15413 4870 aa11.34□□□□□ -0.59
VPS28-215ENST00000531924 METTL21EPA6NDL7 271 aa11.33□□□□□ -0.6
VPS28-215ENST00000531924 TRIM64CA6NLI5 447 aa11.33□□□□□ -0.6
VPS28-215ENST00000531924 MPPED1O15442 326 aa11.33□□□□□ -0.6
VPS28-215ENST00000531924 FCGR3AP08637 254 aa11.33□□□□□ -0.6
VPS28-215ENST00000531924 GSTT2P0CG29 244 aa11.33□□□□□ -0.6
VPS28-215ENST00000531924 GSTT2BP0CG30 244 aa11.33□□□□□ -0.6
VPS28-215ENST00000531924 RRASP10301 218 aa11.33□□□□□ -0.6
VPS28-215ENST00000531924 AADACP22760 399 aa11.33□□□□□ -0.6
VPS28-215ENST00000531924 CRHBPP24387 322 aa11.33□□□□□ -0.6
VPS28-215ENST00000531924 TATDN3Q17R31 274 aa11.33□□□□□ -0.6
VPS28-215ENST00000531924 IGSF11Q5DX21 431 aa11.33□□□□□ -0.6
VPS28-215ENST00000531924 SGPP2Q8IWX5 399 aa11.33□□□□□ -0.6
VPS28-215ENST00000531924 BVESQ8NE79 360 aa11.33□□□□□ -0.6
VPS28-215ENST00000531924 OR10R2Q8NGX6 335 aa11.33□□□□□ -0.6
VPS28-215ENST00000531924 MUC7Q8TAX7 377 aa11.33□□□□□ -0.6
VPS28-215ENST00000531924 SDHAF2Q9NX18 166 aa11.33□□□□□ -0.6
VPS28-215ENST00000531924 COA4Q9NYJ1 87 aa11.33□□□□□ -0.6
VPS28-215ENST00000531924 TRBV6-7A0A0A0MS04 114 aa11.32□□□□□ -0.6
VPS28-215ENST00000531924 LDLRAD4O15165 306 aa11.32□□□□□ -0.6
VPS28-215ENST00000531924 SNRPBP14678 240 aaKnown RBP11.32□□□□□ -0.6
VPS28-215ENST00000531924 GNB3P16520 340 aa11.32□□□□□ -0.6
VPS28-215ENST00000531924 PJVKQ0ZLH3 352 aa11.32□□□□□ -0.6
VPS28-215ENST00000531924 VMA21Q3ZAQ7 101 aa11.32□□□□□ -0.6
VPS28-215ENST00000531924 ZNF367Q7RTV3 350 aa11.32□□□□□ -0.6
VPS28-215ENST00000531924 HAPLN4Q86UW8 402 aa11.32□□□□□ -0.6
VPS28-215ENST00000531924 NRG4Q8WWG1 115 aa11.32□□□□□ -0.6
VPS28-215ENST00000531924 MAFIPQ8WZ33 124 aa11.32□□□□□ -0.6
VPS28-215ENST00000531924 ADTRPQ96IZ2 230 aa11.32□□□□□ -0.6
VPS28-215ENST00000531924 STAB2Q8WWQ8 2551 aa11.31□□□□□ -0.6
VPS28-215ENST00000531924 TRAV1-2A0A0B4J238 106 aa11.31□□□□□ -0.6
VPS28-215ENST00000531924 IFITM5A6NNB3 132 aa11.31□□□□□ -0.6
VPS28-215ENST00000531924 ACTL6BO94805 426 aa11.31□□□□□ -0.6
VPS28-215ENST00000531924 DIRAS3O95661 229 aa11.31□□□□□ -0.6
Retrieved 100 of 20,778 RNA–protein pairs in 30.7 ms