RNA–Protein interactions for RNA: ENST00000525293.5

CD44-216, Transcript of CD44 molecule (Indian blood group), humanhuman

TSL 3

Gene CD44, Length 569 nt, Biotype retained intron, Subcellular localisation Endoplasmic reticulum, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CD44-216ENST00000525293 CRHBPP24387 322 aa1.78□□□□□ -2.12
CD44-216ENST00000525293 CNTFRP26992 372 aa1.78□□□□□ -2.12
CD44-216ENST00000525293 GNG4P50150 75 aa1.78□□□□□ -2.12
CD44-216ENST00000525293 TMBIM6P55061 237 aa1.78□□□□□ -2.12
CD44-216ENST00000525293 RBM11P57052 281 aaKnown RBP1.78□□□□□ -2.12
CD44-216ENST00000525293 RPL27P61353 136 aaKnown RBP1.78□□□□□ -2.12
CD44-216ENST00000525293 UBA52P62987 128 aaKnown RBP1.78□□□□□ -2.12
CD44-216ENST00000525293 SLC35A2P78381 396 aa1.78□□□□□ -2.12
CD44-216ENST00000525293 HOXC5Q00444 222 aa1.78□□□□□ -2.12
CD44-216ENST00000525293 SLC25A11Q02978 314 aaKnown RBP1.78□□□□□ -2.12
CD44-216ENST00000525293 IHHQ14623 411 aa1.78□□□□□ -2.12
CD44-216ENST00000525293 SP6Q3SY56 376 aa1.78□□□□□ -2.12
CD44-216ENST00000525293 TNFAIP8L2Q6P589 184 aaPredicted RBP1.78□□□□□ -2.12
CD44-216ENST00000525293 SVBPQ8N300 66 aa1.78□□□□□ -2.12
CD44-216ENST00000525293 TMEM99Q8N816 258 aa1.78□□□□□ -2.12
CD44-216ENST00000525293 TMEM229BQ8NBD8 167 aa1.78□□□□□ -2.12
CD44-216ENST00000525293 ZNF436-AS1Q8NC38 126 aaPredicted RBP1.78□□□□□ -2.12
CD44-216ENST00000525293 CSNK1G2-AS1Q8NCQ2 148 aa1.78□□□□□ -2.12
CD44-216ENST00000525293 LINC00301Q8NCQ3 95 aa1.78□□□□□ -2.12
CD44-216ENST00000525293 GPR26Q8NDV2 337 aa1.78□□□□□ -2.12
CD44-216ENST00000525293 OR11H6Q8NGC7 330 aa1.78□□□□□ -2.12
CD44-216ENST00000525293 OR5A2Q8NGI9 324 aa1.78□□□□□ -2.12
CD44-216ENST00000525293 ZNF431Q8TF32 576 aaPredicted RBP1.78□□□□□ -2.12
CD44-216ENST00000525293 PP6455Q8WZ26 134 aa1.78□□□□□ -2.12
CD44-216ENST00000525293 DLX4Q92988 240 aaPredicted RBP1.78□□□□□ -2.12
CD44-216ENST00000525293 DCUN1D1Q96GG9 259 aa1.78□□□□□ -2.12
CD44-216ENST00000525293 BMFQ96LC9 184 aa1.78□□□□□ -2.12
CD44-216ENST00000525293 SPACA5Q96QH8 159 aa1.78□□□□□ -2.12
CD44-216ENST00000525293 OR4K3Q96R72 315 aa1.78□□□□□ -2.12
CD44-216ENST00000525293 LINC01587Q99440 93 aa1.78□□□□□ -2.12
CD44-216ENST00000525293 KIR2DL4Q99706 377 aa1.78□□□□□ -2.12
CD44-216ENST00000525293 ZNF670Q9BS34 389 aa1.78□□□□□ -2.12
CD44-216ENST00000525293 EMC6Q9BV81 110 aa1.78□□□□□ -2.12
CD44-216ENST00000525293 SFXN3Q9BWM7 321 aa1.78□□□□□ -2.12
CD44-216ENST00000525293 GNB1LQ9BYB4 327 aa1.78□□□□□ -2.12
CD44-216ENST00000525293 ULBP3Q9BZM4 244 aa1.78□□□□□ -2.12
CD44-216ENST00000525293 SH3BGRL3Q9H299 93 aa1.78□□□□□ -2.12
CD44-216ENST00000525293 RBKSQ9H477 322 aa1.78□□□□□ -2.12
CD44-216ENST00000525293 PRTFDC1Q9NRG1 225 aa1.78□□□□□ -2.12
CD44-216ENST00000525293 DEPPQ9NTK1 212 aa1.78□□□□□ -2.12
CD44-216ENST00000525293 LYRM2Q9NU23 88 aaPredicted RBP1.78□□□□□ -2.12
CD44-216ENST00000525293 OR5AC2Q9NZP5 309 aa1.78□□□□□ -2.12
CD44-216ENST00000525293 TBX21Q9UL17 535 aa1.78□□□□□ -2.12
CD44-216ENST00000525293 VSIG4Q9Y279 399 aa1.78□□□□□ -2.12
CD44-216ENST00000525293 ZNF443Q9Y2A4 671 aaPredicted RBP1.78□□□□□ -2.12
CD44-216ENST00000525293 ZNF256Q9Y2P7 627 aaPredicted RBP1.78□□□□□ -2.12
CD44-216ENST00000525293 RNF11Q9Y3C5 154 aa1.78□□□□□ -2.12
CD44-216ENST00000525293 PCYT1BQ9Y5K3 369 aaPredicted RBP1.78□□□□□ -2.12
CD44-216ENST00000525293 VIRMAQ69YN4 1812 aaKnown RBP1.77□□□□□ -2.13
CD44-216ENST00000525293 KIF21AQ7Z4S6 1674 aa1.77□□□□□ -2.13
CD44-216ENST00000525293 FRMPD1Q5SYB0 1578 aa1.77□□□□□ -2.13
CD44-216ENST00000525293 HECW2Q9P2P5 1572 aa1.77□□□□□ -2.13
CD44-216ENST00000525293 ADGRL2O95490 1459 aa1.77□□□□□ -2.13
CD44-216ENST00000525293 PZPP20742 1482 aa1.77□□□□□ -2.13
CD44-216ENST00000525293 NUP153P49790 1475 aaKnown RBP1.77□□□□□ -2.13
CD44-216ENST00000525293 NPHP4O75161 1426 aaPredicted RBP1.77□□□□□ -2.13
CD44-216ENST00000525293 YTHDC2Q9H6S0 1430 aaKnown RBP1.77□□□□□ -2.13
CD44-216ENST00000525293 A0A087WXM4 84 aa1.77□□□□□ -2.13
CD44-216ENST00000525293 TMED7-TICAM2A0A0A6YYA0 188 aa1.77□□□□□ -2.13
CD44-216ENST00000525293 A0A0U1RQV1 116 aa1.77□□□□□ -2.13
CD44-216ENST00000525293 A0A1W2PP18 115 aa1.77□□□□□ -2.13
CD44-216ENST00000525293 A0A1W2PRS3 328 aa1.77□□□□□ -2.13
CD44-216ENST00000525293 ODAMA1E959 279 aa1.77□□□□□ -2.13
CD44-216ENST00000525293 MYBPHLA2RUH7 354 aa1.77□□□□□ -2.13
CD44-216ENST00000525293 C7orf71A4D174 169 aa1.77□□□□□ -2.13
CD44-216ENST00000525293 C5orf63A6NC05 138 aa1.77□□□□□ -2.13
CD44-216ENST00000525293 RBFOX3A6NFN3 312 aa1.77□□□□□ -2.13
CD44-216ENST00000525293 TMEM212A6NML5 194 aa1.77□□□□□ -2.13
CD44-216ENST00000525293 C8orf87E5RJ46 101 aa1.77□□□□□ -2.13
CD44-216ENST00000525293 F6UB75 175 aa1.77□□□□□ -2.13
CD44-216ENST00000525293 H0YJW9 148 aa1.77□□□□□ -2.13
CD44-216ENST00000525293 H7C1C5 153 aa1.77□□□□□ -2.13
CD44-216ENST00000525293 H7C1H1 209 aa1.77□□□□□ -2.13
CD44-216ENST00000525293 SULT2B1O00204 365 aa1.77□□□□□ -2.13
CD44-216ENST00000525293 ZNF593O00488 134 aaPredicted RBP1.77□□□□□ -2.13
CD44-216ENST00000525293 CRXO43186 299 aaPredicted RBP1.77□□□□□ -2.13
CD44-216ENST00000525293 RENP00797 406 aa1.77□□□□□ -2.13
CD44-216ENST00000525293 P01737 135 aa1.77□□□□□ -2.13
CD44-216ENST00000525293 APOA2P02652 100 aa1.77□□□□□ -2.13
CD44-216ENST00000525293 SOD3P08294 240 aa1.77□□□□□ -2.13
CD44-216ENST00000525293 IGLC6P0CF74 106 aa1.77□□□□□ -2.13
CD44-216ENST00000525293 PGA4P0DJD7 388 aa1.77□□□□□ -2.13
CD44-216ENST00000525293 PGA3P0DJD8 388 aa1.77□□□□□ -2.13
CD44-216ENST00000525293 FGF6P10767 208 aa1.77□□□□□ -2.13
CD44-216ENST00000525293 FABP4P15090 132 aa1.77□□□□□ -2.13
CD44-216ENST00000525293 RAB5AP20339 215 aa1.77□□□□□ -2.13
CD44-216ENST00000525293 RPA3P35244 121 aaPredicted RBP1.77□□□□□ -2.13
CD44-216ENST00000525293 ARL2P36404 184 aa1.77□□□□□ -2.13
CD44-216ENST00000525293 TGFBR1P36897 503 aa1.77□□□□□ -2.13
CD44-216ENST00000525293 FABP6P51161 128 aa1.77□□□□□ -2.13
CD44-216ENST00000525293 BACE1P56817 501 aa1.77□□□□□ -2.13
CD44-216ENST00000525293 FBXW4P57775 412 aa1.77□□□□□ -2.13
CD44-216ENST00000525293 TAS2R20P59543 309 aa1.77□□□□□ -2.13
CD44-216ENST00000525293 RND3P61587 244 aa1.77□□□□□ -2.13
CD44-216ENST00000525293 LCN6P62502 163 aa1.77□□□□□ -2.13
CD44-216ENST00000525293 RPS27AP62979 156 aaKnown RBP1.77□□□□□ -2.13
CD44-216ENST00000525293 LAMTOR4Q0VGL1 99 aa1.77□□□□□ -2.13
CD44-216ENST00000525293 CATR1Q13166 79 aa1.77□□□□□ -2.13
CD44-216ENST00000525293 DHRS2Q13268 280 aa1.77□□□□□ -2.13
CD44-216ENST00000525293 EIF3IQ13347 325 aaKnown RBP1.77□□□□□ -2.13
Retrieved 100 of 20,778 RNA–protein pairs in 211.4 ms