RNA–Protein interactions for RNA: ENST00000508501.5

LIMCH1-208, Transcript of LIM and calponin homology domains 1, humanhuman

APPRIS ALT2 TSL 1 (best) BASIC

Gene LIMCH1, Length 5,054 nt, Biotype protein coding, Subcellular localisation Cytoplasm, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
LIMCH1-208ENST00000508501 RIPPLY3P57055 190 aa9.71□□□□□ -0.85
LIMCH1-208ENST00000508501 ZNF362Q5T0B9 420 aaPredicted RBP9.71□□□□□ -0.85
LIMCH1-208ENST00000508501 MS4A5Q9H3V2 200 aa9.71□□□□□ -0.85
LIMCH1-208ENST00000508501 NXT2Q9NPJ8 142 aaKnown RBP9.71□□□□□ -0.85
LIMCH1-208ENST00000508501 CLEC1BQ9P126 229 aa9.71□□□□□ -0.85
LIMCH1-208ENST00000508501 UBR1Q8IWV7 1749 aa9.71□□□□□ -0.85
LIMCH1-208ENST00000508501 CACNA1CQ13936 2221 aa9.71□□□□□ -0.85
LIMCH1-208ENST00000508501 TRBV24-1A0A075B6N3 115 aa9.71□□□□□ -0.86
LIMCH1-208ENST00000508501 LMO7DNF2Z398 122 aa9.71□□□□□ -0.86
LIMCH1-208ENST00000508501 ZNF585BQ52M93 769 aa9.71□□□□□ -0.86
LIMCH1-208ENST00000508501 MIC13Q5XKP0 118 aa9.71□□□□□ -0.86
LIMCH1-208ENST00000508501 UNQ9370/PRO34162Q6UXP9 181 aa9.71□□□□□ -0.86
LIMCH1-208ENST00000508501 ZNF793Q6ZN11 406 aa9.71□□□□□ -0.86
LIMCH1-208ENST00000508501 NHP2Q9NX24 153 aaKnown RBP9.71□□□□□ -0.86
LIMCH1-208ENST00000508501 ADAMTSL3P82987 1691 aa9.71□□□□□ -0.86
LIMCH1-208ENST00000508501 CNTRLQ7Z7A1 2325 aa9.71□□□□□ -0.86
LIMCH1-208ENST00000508501 EFNB2P52799 333 aa9.71□□□□□ -0.86
LIMCH1-208ENST00000508501 DYNLRB2Q8TF09 96 aa9.71□□□□□ -0.86
LIMCH1-208ENST00000508501 ROBO1Q9Y6N7 1651 aa9.71□□□□□ -0.86
LIMCH1-208ENST00000508501 TRBV5-7A0A0A0MS05 114 aa9.71□□□□□ -0.86
LIMCH1-208ENST00000508501 DPM2O94777 84 aa9.71□□□□□ -0.86
LIMCH1-208ENST00000508501 COL9A2Q14055 689 aaPredicted RBP9.71□□□□□ -0.86
LIMCH1-208ENST00000508501 TM4SF20Q53R12 229 aa9.71□□□□□ -0.86
LIMCH1-208ENST00000508501 C17orf99Q6UX52 265 aa9.71□□□□□ -0.86
LIMCH1-208ENST00000508501 CXorf67Q86X51 503 aaPredicted RBP9.71□□□□□ -0.86
LIMCH1-208ENST00000508501 TMEM186Q96B77 213 aa9.71□□□□□ -0.86
LIMCH1-208ENST00000508501 VSTM2LQ96N03 204 aa9.71□□□□□ -0.86
LIMCH1-208ENST00000508501 NEU1Q99519 415 aa9.71□□□□□ -0.86
LIMCH1-208ENST00000508501 FNDC4Q9H6D8 234 aaPredicted RBP9.71□□□□□ -0.86
LIMCH1-208ENST00000508501 GGTLC3B5MD39 225 aa9.7□□□□□ -0.86
LIMCH1-208ENST00000508501 PPIAL4DF5H284 164 aa9.7□□□□□ -0.86
LIMCH1-208ENST00000508501 PGLYRP1O75594 196 aaPredicted RBP9.7□□□□□ -0.86
LIMCH1-208ENST00000508501 RRN3P1Q2M238 152 aa9.7□□□□□ -0.86
LIMCH1-208ENST00000508501 FGFRL1Q8N441 504 aa9.7□□□□□ -0.86
LIMCH1-208ENST00000508501 WFDC5Q8TCV5 224 aa9.7□□□□□ -0.86
LIMCH1-208ENST00000508501 FXYD3Q14802 87 aa9.7□□□□□ -0.86
LIMCH1-208ENST00000508501 ZNF146Q15072 292 aa9.7□□□□□ -0.86
LIMCH1-208ENST00000508501 WIPI1Q5MNZ9 446 aaPredicted RBP9.7□□□□□ -0.86
LIMCH1-208ENST00000508501 FMC1Q96HJ9 113 aa9.7□□□□□ -0.86
LIMCH1-208ENST00000508501 RCC1LQ96I51 464 aaKnown RBP9.7□□□□□ -0.86
LIMCH1-208ENST00000508501 SOSTQ9BQB4 213 aa9.7□□□□□ -0.86
LIMCH1-208ENST00000508501 CADM4Q8NFZ8 388 aa9.7□□□□□ -0.86
LIMCH1-208ENST00000508501 DNASE2BQ8WZ79 361 aa9.7□□□□□ -0.86
LIMCH1-208ENST00000508501 C8orf44Q96CB5 159 aa9.7□□□□□ -0.86
LIMCH1-208ENST00000508501 FOXC2Q99958 501 aa9.7□□□□□ -0.86
LIMCH1-208ENST00000508501 NABP2Q9BQ15 211 aa9.7□□□□□ -0.86
LIMCH1-208ENST00000508501 RSPO3Q9BXY4 272 aaPredicted RBP9.7□□□□□ -0.86
LIMCH1-208ENST00000508501 GNB1LQ9BYB4 327 aa9.7□□□□□ -0.86
LIMCH1-208ENST00000508501 OSTCQ9NRP0 149 aa9.7□□□□□ -0.86
LIMCH1-208ENST00000508501 PCOLCE2Q9UKZ9 415 aa9.7□□□□□ -0.86
LIMCH1-208ENST00000508501 PPIHO43447 177 aaKnown RBP9.7□□□□□ -0.86
LIMCH1-208ENST00000508501 ZNF48Q96MX3 618 aaPredicted RBP9.7□□□□□ -0.86
LIMCH1-208ENST00000508501 WDR54Q9H977 334 aa9.7□□□□□ -0.86
LIMCH1-208ENST00000508501 HBDP02042 147 aa9.69□□□□□ -0.86
LIMCH1-208ENST00000508501 ZNF708P17019 499 aa9.69□□□□□ -0.86
LIMCH1-208ENST00000508501 RPL31P62899 125 aaKnown RBP9.69□□□□□ -0.86
LIMCH1-208ENST00000508501 CXorf66Q5JRM2 361 aaPredicted RBP9.69□□□□□ -0.86
LIMCH1-208ENST00000508501 RPP21Q9H633 154 aaKnown RBP9.69□□□□□ -0.86
LIMCH1-208ENST00000508501 BGLAPP02818 100 aa9.69□□□□□ -0.86
LIMCH1-208ENST00000508501 CEACAM21Q3KPI0 293 aa9.69□□□□□ -0.86
LIMCH1-208ENST00000508501 MRPS18BQ9Y676 258 aaKnown RBP9.69□□□□□ -0.86
LIMCH1-208ENST00000508501 MYOM1P52179 1685 aa9.69□□□□□ -0.86
LIMCH1-208ENST00000508501 LRRC37A3O60309 1634 aa9.69□□□□□ -0.86
LIMCH1-208ENST00000508501 CAMTA1Q9Y6Y1 1673 aa9.69□□□□□ -0.86
LIMCH1-208ENST00000508501 SSTR5P35346 364 aa9.69□□□□□ -0.86
LIMCH1-208ENST00000508501 TMEM187Q14656 261 aa9.69□□□□□ -0.86
LIMCH1-208ENST00000508501 MMDQ15546 238 aa9.69□□□□□ -0.86
LIMCH1-208ENST00000508501 LAMTOR1Q6IAA8 161 aa9.69□□□□□ -0.86
LIMCH1-208ENST00000508501 ATP5L2Q7Z4Y8 100 aa9.69□□□□□ -0.86
LIMCH1-208ENST00000508501 RAX2Q96IS3 184 aa9.69□□□□□ -0.86
LIMCH1-208ENST00000508501 SIT1Q9Y3P8 196 aa9.69□□□□□ -0.86
LIMCH1-208ENST00000508501 CDIPTO14735 213 aa9.68□□□□□ -0.86
LIMCH1-208ENST00000508501 DMRTC1Q5HYR2 192 aa9.68□□□□□ -0.86
LIMCH1-208ENST00000508501 FAM27BQ5VT28 67 aa9.68□□□□□ -0.86
LIMCH1-208ENST00000508501 RASL11AQ6T310 242 aa9.68□□□□□ -0.86
LIMCH1-208ENST00000508501 RPRMQ9NS64 109 aa9.68□□□□□ -0.86
LIMCH1-208ENST00000508501 NPFFO15130 113 aa9.68□□□□□ -0.86
LIMCH1-208ENST00000508501 SERF1AO75920 110 aa9.68□□□□□ -0.86
LIMCH1-208ENST00000508501 OR52E5Q8NH55 327 aa9.68□□□□□ -0.86
LIMCH1-208ENST00000508501 CCL17Q92583 94 aa9.68□□□□□ -0.86
LIMCH1-208ENST00000508501 ERG28Q9UKR5 140 aa9.68□□□□□ -0.86
LIMCH1-208ENST00000508501 NINQ8N4C6 2090 aa9.68□□□□□ -0.86
LIMCH1-208ENST00000508501 TIAM2Q8IVF5 1701 aa9.68□□□□□ -0.86
LIMCH1-208ENST00000508501 NGFRP08138 427 aa9.68□□□□□ -0.86
LIMCH1-208ENST00000508501 Q6ZNB5 142 aa9.68□□□□□ -0.86
LIMCH1-208ENST00000508501 SLC25A38Q96DW6 304 aa9.68□□□□□ -0.86
LIMCH1-208ENST00000508501 CCL26Q9Y258 94 aa9.68□□□□□ -0.86
LIMCH1-208ENST00000508501 LOXL2Q9Y4K0 774 aa9.68□□□□□ -0.86
LIMCH1-208ENST00000508501 C1QTNF9P0C862 333 aa9.68□□□□□ -0.86
LIMCH1-208ENST00000508501 ZNF83P51522 516 aa9.68□□□□□ -0.86
LIMCH1-208ENST00000508501 CLDND2Q8NHS1 167 aa9.68□□□□□ -0.86
LIMCH1-208ENST00000508501 JPT1Q9UK76 154 aa9.68□□□□□ -0.86
LIMCH1-208ENST00000508501 NDUFA2O43678 99 aa9.67□□□□□ -0.86
LIMCH1-208ENST00000508501 SYNGR3O43761 229 aa9.67□□□□□ -0.86
LIMCH1-208ENST00000508501 PIGYQ3MUY2 71 aa9.67□□□□□ -0.86
LIMCH1-208ENST00000508501 LHX8Q68G74 356 aa9.67□□□□□ -0.86
LIMCH1-208ENST00000508501 RNF182Q8N6D2 247 aa9.67□□□□□ -0.86
LIMCH1-208ENST00000508501 PHLDA1Q8WV24 401 aaPredicted RBP9.67□□□□□ -0.86
LIMCH1-208ENST00000508501 DLX4Q92988 240 aaPredicted RBP9.67□□□□□ -0.86
LIMCH1-208ENST00000508501 CITO14578 2027 aa9.67□□□□□ -0.86
Retrieved 100 of 20,778 RNA–protein pairs in 29 ms