RNA–Protein interactions for RNA: ENST00000488376.2

SYNE1-226, Transcript of spectrin repeat containing nuclear envelope protein 1, humanhuman

TSL 2

Gene SYNE1, Length 414 nt, Biotype retained intron, Subcellular localisation Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SYNE1-226ENST00000488376 KPRPQ5T749 579 aaPredicted RBP10.87□□□□□ -0.67
SYNE1-226ENST00000488376 SAMD12Q8N8I0 201 aa10.87□□□□□ -0.67
SYNE1-226ENST00000488376 LINC00482Q8N8I6 264 aa10.87□□□□□ -0.67
SYNE1-226ENST00000488376 RNF152Q8N8N0 203 aa10.87□□□□□ -0.67
SYNE1-226ENST00000488376 WFDC9Q8NEX5 89 aa10.87□□□□□ -0.67
SYNE1-226ENST00000488376 CASTOR1Q8WTX7 329 aa10.87□□□□□ -0.67
SYNE1-226ENST00000488376 SLC25A46Q96AG3 418 aa10.87□□□□□ -0.67
SYNE1-226ENST00000488376 FAM103A1Q9BTL3 118 aaKnown RBP10.87□□□□□ -0.67
SYNE1-226ENST00000488376 DCSTAMPQ9H295 470 aa10.87□□□□□ -0.67
SYNE1-226ENST00000488376 SLC35D1Q9NTN3 355 aa10.87□□□□□ -0.67
SYNE1-226ENST00000488376 KIAA1456Q9P272 454 aa10.87□□□□□ -0.67
SYNE1-226ENST00000488376 METTL1Q9UBP6 276 aaKnown RBP10.87□□□□□ -0.67
SYNE1-226ENST00000488376 ANXA10Q9UJ72 324 aa10.87□□□□□ -0.67
SYNE1-226ENST00000488376 A3GALT2U3KPV4 340 aa10.87□□□□□ -0.67
SYNE1-226ENST00000488376 SRRM4A7MD48 611 aaKnown RBP10.86□□□□□ -0.67
SYNE1-226ENST00000488376 SLC25A17O43808 307 aa10.86□□□□□ -0.67
SYNE1-226ENST00000488376 RRP9O43818 475 aaKnown RBP10.86□□□□□ -0.67
SYNE1-226ENST00000488376 SOX15O60248 233 aa10.86□□□□□ -0.67
SYNE1-226ENST00000488376 RBBP9O75884 186 aa10.86□□□□□ -0.67
SYNE1-226ENST00000488376 EIF4EP06730 217 aaKnown RBP10.86□□□□□ -0.67
SYNE1-226ENST00000488376 CD33P20138 364 aa10.86□□□□□ -0.67
SYNE1-226ENST00000488376 PSMB8P28062 276 aa10.86□□□□□ -0.67
SYNE1-226ENST00000488376 RPS16P62249 146 aaKnown RBP10.86□□□□□ -0.67
SYNE1-226ENST00000488376 SSBP2P81877 361 aaPredicted RBP10.86□□□□□ -0.67
SYNE1-226ENST00000488376 PITPNAQ00169 270 aa10.86□□□□□ -0.67
SYNE1-226ENST00000488376 PJVKQ0ZLH3 352 aa10.86□□□□□ -0.67
SYNE1-226ENST00000488376 KIAA0141Q14154 515 aaPredicted RBP10.86□□□□□ -0.67
SYNE1-226ENST00000488376 PLGLAQ15195 96 aa10.86□□□□□ -0.67
SYNE1-226ENST00000488376 CTF1Q16619 201 aa10.86□□□□□ -0.67
SYNE1-226ENST00000488376 PDPNQ86YL7 162 aa10.86□□□□□ -0.67
SYNE1-226ENST00000488376 ZNF695Q8IW36 515 aa10.86□□□□□ -0.67
SYNE1-226ENST00000488376 MRPL41Q8IXM3 137 aaKnown RBP10.86□□□□□ -0.67
SYNE1-226ENST00000488376 COMMD1Q8N668 190 aa10.86□□□□□ -0.67
SYNE1-226ENST00000488376 BVESQ8NE79 360 aa10.86□□□□□ -0.67
SYNE1-226ENST00000488376 DDB2Q92466 427 aa10.86□□□□□ -0.67
SYNE1-226ENST00000488376 SNAPC3Q92966 411 aa10.86□□□□□ -0.67
SYNE1-226ENST00000488376 RAX2Q96IS3 184 aa10.86□□□□□ -0.67
SYNE1-226ENST00000488376 GPHA2Q96T91 129 aa10.86□□□□□ -0.67
SYNE1-226ENST00000488376 ZNF580Q9UK33 172 aa10.86□□□□□ -0.67
SYNE1-226ENST00000488376 RBM7Q9Y580 266 aaKnown RBP10.86□□□□□ -0.67
SYNE1-226ENST00000488376 TRAV41A0A0B4J266 112 aa10.85□□□□□ -0.67
SYNE1-226ENST00000488376 ARPC1BO15143 372 aaKnown RBP10.85□□□□□ -0.67
SYNE1-226ENST00000488376 XRCC3O43542 346 aa10.85□□□□□ -0.67
SYNE1-226ENST00000488376 CA2P00918 260 aa10.85□□□□□ -0.67
SYNE1-226ENST00000488376 APOA2P02652 100 aa10.85□□□□□ -0.67
SYNE1-226ENST00000488376 DUTP33316 252 aaKnown RBP10.85□□□□□ -0.67
SYNE1-226ENST00000488376 THBS3P49746 956 aa10.85□□□□□ -0.67
SYNE1-226ENST00000488376 RPL30P62888 115 aaKnown RBP10.85□□□□□ -0.67
SYNE1-226ENST00000488376 ECSCRQ19T08 205 aa10.85□□□□□ -0.67
SYNE1-226ENST00000488376 MRGPRG-AS1Q2M3A8 158 aa10.85□□□□□ -0.67
SYNE1-226ENST00000488376 CXorf66Q5JRM2 361 aaPredicted RBP10.85□□□□□ -0.67
SYNE1-226ENST00000488376 UBE2NLQ5JXB2 153 aa10.85□□□□□ -0.67
SYNE1-226ENST00000488376 CNIH2Q6PI25 160 aa10.85□□□□□ -0.67
SYNE1-226ENST00000488376 HOGA1Q86XE5 327 aa10.85□□□□□ -0.67
SYNE1-226ENST00000488376 BEST4Q8NFU0 473 aa10.85□□□□□ -0.67
SYNE1-226ENST00000488376 MYOZ3Q8TDC0 251 aa10.85□□□□□ -0.67
SYNE1-226ENST00000488376 FLYWCH2Q96CP2 140 aaKnown RBP10.85□□□□□ -0.67
SYNE1-226ENST00000488376 DIABLOQ9NR28 239 aa10.85□□□□□ -0.67
SYNE1-226ENST00000488376 ZFP57Q9NU63 452 aa10.85□□□□□ -0.67
SYNE1-226ENST00000488376 OR2W1Q9Y3N9 320 aa10.85□□□□□ -0.67
SYNE1-226ENST00000488376 PLXNB1O43157 2135 aa10.84□□□□□ -0.67
SYNE1-226ENST00000488376 A0A0A6YYH2 397 aa10.84□□□□□ -0.67
SYNE1-226ENST00000488376 A6NJ64 397 aa10.84□□□□□ -0.67
SYNE1-226ENST00000488376 TUSC2O75896 110 aa10.84□□□□□ -0.67
SYNE1-226ENST00000488376 IGLV1-40P01703 118 aa10.84□□□□□ -0.67
SYNE1-226ENST00000488376 HLA-DQB1P01920 261 aa10.84□□□□□ -0.67
SYNE1-226ENST00000488376 CRYGBP07316 175 aa10.84□□□□□ -0.67
SYNE1-226ENST00000488376 ELANEP08246 267 aa10.84□□□□□ -0.67
SYNE1-226ENST00000488376 TAS2R20P59543 309 aa10.84□□□□□ -0.67
SYNE1-226ENST00000488376 OR2B11Q5JQS5 317 aa10.84□□□□□ -0.67
SYNE1-226ENST00000488376 GPR107Q5VW38 600 aa10.84□□□□□ -0.67
SYNE1-226ENST00000488376 CROCCP3Q8IVE0 287 aa10.84□□□□□ -0.67
SYNE1-226ENST00000488376 MINDY2Q8NBR6 621 aa10.84□□□□□ -0.67
SYNE1-226ENST00000488376 P2RX4Q99571 388 aa10.84□□□□□ -0.67
SYNE1-226ENST00000488376 RNF5Q99942 180 aa10.84□□□□□ -0.67
SYNE1-226ENST00000488376 GON7Q9BXV9 100 aa10.84□□□□□ -0.67
SYNE1-226ENST00000488376 GNB4Q9HAV0 340 aa10.84□□□□□ -0.67
SYNE1-226ENST00000488376 COMMD3Q9UBI1 195 aa10.84□□□□□ -0.67
SYNE1-226ENST00000488376 GABARAPO95166 117 aa10.83□□□□□ -0.68
SYNE1-226ENST00000488376 AADACP22760 399 aa10.83□□□□□ -0.68
SYNE1-226ENST00000488376 LUMP51884 338 aaPredicted RBP10.83□□□□□ -0.68
SYNE1-226ENST00000488376 CRIP2P52943 208 aaPredicted RBP10.83□□□□□ -0.68
SYNE1-226ENST00000488376 ARPC4P59998 168 aa10.83□□□□□ -0.68
SYNE1-226ENST00000488376 EIF4EBP1Q13541 118 aaPredicted RBP10.83□□□□□ -0.68
SYNE1-226ENST00000488376 TMEM177Q53S58 311 aa10.83□□□□□ -0.68
SYNE1-226ENST00000488376 FOXB2Q5VYV0 432 aa10.83□□□□□ -0.68
SYNE1-226ENST00000488376 ZNF660Q6AZW8 331 aaPredicted RBP10.83□□□□□ -0.68
SYNE1-226ENST00000488376 ANKRD13BQ86YJ7 626 aa10.83□□□□□ -0.68
SYNE1-226ENST00000488376 ZNF645Q8N7E2 425 aa10.83□□□□□ -0.68
SYNE1-226ENST00000488376 ABHD5Q8WTS1 349 aa10.83□□□□□ -0.68
SYNE1-226ENST00000488376 S100A16Q96FQ6 103 aaKnown RBP10.83□□□□□ -0.68
SYNE1-226ENST00000488376 HARBI1Q96MB7 349 aa10.83□□□□□ -0.68
SYNE1-226ENST00000488376 OR5B12Q96R08 314 aa10.83□□□□□ -0.68
SYNE1-226ENST00000488376 TSNAXQ99598 290 aaKnown RBP10.83□□□□□ -0.68
SYNE1-226ENST00000488376 RBMX2Q9Y388 322 aaKnown RBP10.83□□□□□ -0.68
SYNE1-226ENST00000488376 NUBP2Q9Y5Y2 271 aa10.83□□□□□ -0.68
SYNE1-226ENST00000488376 A0A1W2PN81 502 aa10.82□□□□□ -0.68
SYNE1-226ENST00000488376 CCL24O00175 119 aa10.82□□□□□ -0.68
SYNE1-226ENST00000488376 TMEM127O75204 238 aa10.82□□□□□ -0.68
SYNE1-226ENST00000488376 SPDEFO95238 335 aa10.82□□□□□ -0.68
Retrieved 100 of 20,778 RNA–protein pairs in 39.1 ms