RNA–Protein interactions for RNA: ENST00000482065.1

LIMS3-204, Transcript of LIM zinc finger domain containing 3, humanhuman

TSL 1 (best)

Gene LIMS3, Length 690 nt, Biotype retained intron, Subcellular localisation Cytosol .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
LIMS3-204ENST00000482065 OR10J5Q8NHC4 309 aa11.57□□□□□ -0.56
LIMS3-204ENST00000482065 RNF5Q99942 180 aa11.57□□□□□ -0.56
LIMS3-204ENST00000482065 ALX4Q9H161 411 aaPredicted RBP11.57□□□□□ -0.56
LIMS3-204ENST00000482065 ATG5Q9H1Y0 275 aa11.57□□□□□ -0.56
LIMS3-204ENST00000482065 Q9H521 79 aa11.57□□□□□ -0.56
LIMS3-204ENST00000482065 SLC35D1Q9NTN3 355 aa11.57□□□□□ -0.56
LIMS3-204ENST00000482065 SDHAF2Q9NX18 166 aa11.57□□□□□ -0.56
LIMS3-204ENST00000482065 STUB1Q9UNE7 303 aa11.57□□□□□ -0.56
LIMS3-204ENST00000482065 FOXA2Q9Y261 457 aaPredicted RBP11.57□□□□□ -0.56
LIMS3-204ENST00000482065 IGKV1D-8A0A087WSZ0 117 aa11.56□□□□□ -0.56
LIMS3-204ENST00000482065 TRBV6-7A0A0A0MS04 114 aa11.56□□□□□ -0.56
LIMS3-204ENST00000482065 METTL21EPA6NDL7 271 aa11.56□□□□□ -0.56
LIMS3-204ENST00000482065 NOTOA8MTQ0 251 aa11.56□□□□□ -0.56
LIMS3-204ENST00000482065 APOA2P02652 100 aa11.56□□□□□ -0.56
LIMS3-204ENST00000482065 FGF9P31371 208 aaPredicted RBP11.56□□□□□ -0.56
LIMS3-204ENST00000482065 C9orf66Q5T8R8 295 aa11.56□□□□□ -0.56
LIMS3-204ENST00000482065 PPP1R27Q86WC6 154 aa11.56□□□□□ -0.56
LIMS3-204ENST00000482065 PDPNQ86YL7 162 aa11.56□□□□□ -0.56
LIMS3-204ENST00000482065 ZNF436-AS1Q8NC38 126 aaPredicted RBP11.56□□□□□ -0.56
LIMS3-204ENST00000482065 FCGR1BQ92637 280 aa11.56□□□□□ -0.56
LIMS3-204ENST00000482065 TSNAXQ99598 290 aaKnown RBP11.56□□□□□ -0.56
LIMS3-204ENST00000482065 NUBP2Q9Y5Y2 271 aa11.56□□□□□ -0.56
LIMS3-204ENST00000482065 SLC25A17O43808 307 aa11.55□□□□□ -0.56
LIMS3-204ENST00000482065 SPDEFO95238 335 aa11.55□□□□□ -0.56
LIMS3-204ENST00000482065 OR8U8P0C7N1 319 aa11.55□□□□□ -0.56
LIMS3-204ENST00000482065 TALDO1P37837 337 aa11.55□□□□□ -0.56
LIMS3-204ENST00000482065 RUNX1Q01196 453 aa11.55□□□□□ -0.56
LIMS3-204ENST00000482065 ZNF616Q08AN1 781 aa11.55□□□□□ -0.56
LIMS3-204ENST00000482065 C11orf87Q6NUJ2 197 aa11.55□□□□□ -0.56
LIMS3-204ENST00000482065 UNQ5815/PRO19632Q6UWF5 114 aa11.55□□□□□ -0.56
LIMS3-204ENST00000482065 LFNGQ8NES3 379 aa11.55□□□□□ -0.56
LIMS3-204ENST00000482065 FLYWCH2Q96CP2 140 aaKnown RBP11.55□□□□□ -0.56
LIMS3-204ENST00000482065 PRR25Q96S07 402 aa11.55□□□□□ -0.56
LIMS3-204ENST00000482065 GINS4Q9BRT9 223 aa11.55□□□□□ -0.56
LIMS3-204ENST00000482065 YTHDF1Q9BYJ9 559 aaKnown RBP11.55□□□□□ -0.56
LIMS3-204ENST00000482065 OR51E2Q9H255 320 aa11.55□□□□□ -0.56
LIMS3-204ENST00000482065 DAPK2Q9UIK4 370 aa11.55□□□□□ -0.56
LIMS3-204ENST00000482065 SCOCQ9UIL1 159 aa11.55□□□□□ -0.56
LIMS3-204ENST00000482065 ARPC1BO15143 372 aaKnown RBP11.54□□□□□ -0.56
LIMS3-204ENST00000482065 IGLV2-23P01705 113 aa11.54□□□□□ -0.56
LIMS3-204ENST00000482065 ECI1P42126 302 aa11.54□□□□□ -0.56
LIMS3-204ENST00000482065 TMEM267Q0VDI3 215 aaPredicted RBP11.54□□□□□ -0.56
LIMS3-204ENST00000482065 ZNF260Q3ZCT1 412 aa11.54□□□□□ -0.56
LIMS3-204ENST00000482065 CDNFQ49AH0 187 aa11.54□□□□□ -0.56
LIMS3-204ENST00000482065 ACTBL2Q562R1 376 aa11.54□□□□□ -0.56
LIMS3-204ENST00000482065 ZNF773Q6PK81 442 aa11.54□□□□□ -0.56
LIMS3-204ENST00000482065 ZNF562Q6V9R5 426 aa11.54□□□□□ -0.56
LIMS3-204ENST00000482065 TCTEX1D1Q8N7M0 179 aa11.54□□□□□ -0.56
LIMS3-204ENST00000482065 GRPEL2Q8TAA5 225 aa11.54□□□□□ -0.56
LIMS3-204ENST00000482065 ARPC1AQ92747 370 aa11.54□□□□□ -0.56
LIMS3-204ENST00000482065 MS4A10Q96PG2 267 aa11.54□□□□□ -0.56
LIMS3-204ENST00000482065 RNF167Q9H6Y7 350 aa11.54□□□□□ -0.56
LIMS3-204ENST00000482065 SSR3Q9UNL2 185 aa11.54□□□□□ -0.56
LIMS3-204ENST00000482065 RRP15Q9Y3B9 282 aaKnown RBP11.54□□□□□ -0.56
LIMS3-204ENST00000482065 RBM7Q9Y580 266 aaKnown RBP11.54□□□□□ -0.56
LIMS3-204ENST00000482065 COL7A1Q02388 2944 aa11.54□□□□□ -0.56
LIMS3-204ENST00000482065 RAMP3O60896 148 aa11.53□□□□□ -0.56
LIMS3-204ENST00000482065 DIRAS3O95661 229 aa11.53□□□□□ -0.56
LIMS3-204ENST00000482065 IGHV3-11P01762 117 aa11.53□□□□□ -0.56
LIMS3-204ENST00000482065 CLEC2LP0C7M8 214 aa11.53□□□□□ -0.56
LIMS3-204ENST00000482065 SDC2P34741 201 aa11.53□□□□□ -0.56
LIMS3-204ENST00000482065 SLURP1P55000 103 aa11.53□□□□□ -0.56
LIMS3-204ENST00000482065 SSBP2P81877 361 aaPredicted RBP11.53□□□□□ -0.56
LIMS3-204ENST00000482065 FXYD3Q14802 87 aa11.53□□□□□ -0.56
LIMS3-204ENST00000482065 SFXN4Q6P4A7 337 aa11.53□□□□□ -0.56
LIMS3-204ENST00000482065 Q6ZS49 121 aa11.53□□□□□ -0.56
LIMS3-204ENST00000482065 H1FOOQ8IZA3 346 aaPredicted RBP11.53□□□□□ -0.56
LIMS3-204ENST00000482065 BVESQ8NE79 360 aa11.53□□□□□ -0.56
LIMS3-204ENST00000482065 LGALS14Q8TCE9 139 aa11.53□□□□□ -0.56
LIMS3-204ENST00000482065 NUDCD2Q8WVJ2 157 aa11.53□□□□□ -0.56
LIMS3-204ENST00000482065 DCUN1D4Q92564 292 aa11.53□□□□□ -0.56
LIMS3-204ENST00000482065 HARBI1Q96MB7 349 aa11.53□□□□□ -0.56
LIMS3-204ENST00000482065 EXOSC5Q9NQT4 235 aaKnown RBP eCLIP11.53□□□□□ -0.56
LIMS3-204ENST00000482065 ZMAT5Q9UDW3 170 aaKnown RBP11.53□□□□□ -0.56
LIMS3-204ENST00000482065 IGHV4OR15-8A0A075B7B6 117 aa11.52□□□□□ -0.57
LIMS3-204ENST00000482065 A0A087WW49 117 aa11.52□□□□□ -0.57
LIMS3-204ENST00000482065 TMEM235A6NFC5 223 aa11.52□□□□□ -0.57
LIMS3-204ENST00000482065 J3QRK9 145 aa11.52□□□□□ -0.57
LIMS3-204ENST00000482065 CRYGBP07316 175 aa11.52□□□□□ -0.57
LIMS3-204ENST00000482065 LGALS1P09382 135 aaKnown RBP11.52□□□□□ -0.57
LIMS3-204ENST00000482065 DTYMKP23919 212 aa11.52□□□□□ -0.57
LIMS3-204ENST00000482065 TPPP2P59282 170 aa11.52□□□□□ -0.57
LIMS3-204ENST00000482065 MXD1Q05195 221 aa11.52□□□□□ -0.57
LIMS3-204ENST00000482065 CD69Q07108 199 aa11.52□□□□□ -0.57
LIMS3-204ENST00000482065 PJVKQ0ZLH3 352 aa11.52□□□□□ -0.57
LIMS3-204ENST00000482065 SRSF7Q16629 238 aaKnown RBP eCLIP11.52□□□□□ -0.57
LIMS3-204ENST00000482065 AKIRIN2Q53H80 203 aa11.52□□□□□ -0.57
LIMS3-204ENST00000482065 HACD4Q5VWC8 232 aa11.52□□□□□ -0.57
LIMS3-204ENST00000482065 TPRA1Q86W33 373 aa11.52□□□□□ -0.57
LIMS3-204ENST00000482065 ST6GALNAC5Q9BVH7 336 aa11.52□□□□□ -0.57
LIMS3-204ENST00000482065 LOC100506127A0A0U1RQW1 187 aa11.51□□□□□ -0.57
LIMS3-204ENST00000482065 SRRM4A7MD48 611 aaKnown RBP11.51□□□□□ -0.57
LIMS3-204ENST00000482065 LINC01619G3V211 115 aa11.51□□□□□ -0.57
LIMS3-204ENST00000482065 OVOL1O14753 267 aa11.51□□□□□ -0.57
LIMS3-204ENST00000482065 SHOXO15266 292 aa11.51□□□□□ -0.57
LIMS3-204ENST00000482065 ARL6IP1Q15041 203 aa11.51□□□□□ -0.57
LIMS3-204ENST00000482065 NEDD8Q15843 81 aa11.51□□□□□ -0.57
LIMS3-204ENST00000482065 PYHIN1Q6K0P9 492 aa11.51□□□□□ -0.57
LIMS3-204ENST00000482065 DLX4Q92988 240 aaPredicted RBP11.51□□□□□ -0.57
LIMS3-204ENST00000482065 B9D2Q9BPU9 175 aa11.51□□□□□ -0.57
Retrieved 100 of 20,778 RNA–protein pairs in 45.1 ms