RNA–Protein interactions for RNA: ENST00000477612.5

COL9A3-211, Transcript of collagen type IX alpha 3 chain, humanhuman

TSL 3

Gene COL9A3, Length 635 nt, Biotype processed transcript, Subcellular localisation Cytosol .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
COL9A3-211ENST00000477612 PARP11Q9NR21 331 aa16.97■□□□□ 0.31
COL9A3-211ENST00000477612 FBXO7Q9Y3I1 522 aa16.97■□□□□ 0.31
COL9A3-211ENST00000477612 APOA2P02652 100 aa16.96■□□□□ 0.31
COL9A3-211ENST00000477612 CLEC2LP0C7M8 214 aa16.96■□□□□ 0.31
COL9A3-211ENST00000477612 EGR2P11161 476 aaPredicted RBP16.96■□□□□ 0.31
COL9A3-211ENST00000477612 TAGLNQ01995 201 aaKnown RBP16.96■□□□□ 0.31
COL9A3-211ENST00000477612 MXD1Q05195 221 aa16.96■□□□□ 0.31
COL9A3-211ENST00000477612 ZNF562Q6V9R5 426 aa16.96■□□□□ 0.31
COL9A3-211ENST00000477612 TCTEX1D1Q8N7M0 179 aa16.96■□□□□ 0.31
COL9A3-211ENST00000477612 ZNF491Q8N8L2 437 aa16.96■□□□□ 0.31
COL9A3-211ENST00000477612 OR2D2Q9H210 308 aa16.96■□□□□ 0.31
COL9A3-211ENST00000477612 KLK15Q9H2R5 256 aa16.96■□□□□ 0.31
COL9A3-211ENST00000477612 RHBDL2Q9NX52 303 aa16.96■□□□□ 0.31
COL9A3-211ENST00000477612 ETV7Q9Y603 341 aa16.96■□□□□ 0.31
COL9A3-211ENST00000477612 LOC100506127A0A0U1RQW1 187 aa16.95■□□□□ 0.3
COL9A3-211ENST00000477612 M0R1X1 148 aa16.95■□□□□ 0.3
COL9A3-211ENST00000477612 CTXN2P0C2S0 81 aa16.95■□□□□ 0.3
COL9A3-211ENST00000477612 RUNX1Q01196 453 aa16.95■□□□□ 0.3
COL9A3-211ENST00000477612 FHL3Q13643 280 aa16.95■□□□□ 0.3
COL9A3-211ENST00000477612 FLYWCH2Q96CP2 140 aaKnown RBP16.95■□□□□ 0.3
COL9A3-211ENST00000477612 C5orf30Q96GV9 206 aa16.95■□□□□ 0.3
COL9A3-211ENST00000477612 SLC35D1Q9NTN3 355 aa16.95■□□□□ 0.3
COL9A3-211ENST00000477612 LGALS7P47929 136 aa16.94■□□□□ 0.3
COL9A3-211ENST00000477612 RAB9AP51151 201 aa16.94■□□□□ 0.3
COL9A3-211ENST00000477612 RPS16P62249 146 aaKnown RBP16.94■□□□□ 0.3
COL9A3-211ENST00000477612 PLGLAQ15195 96 aa16.94■□□□□ 0.3
COL9A3-211ENST00000477612 AKIRIN2Q53H80 203 aa16.94■□□□□ 0.3
COL9A3-211ENST00000477612 TMEM65Q6PI78 240 aa16.94■□□□□ 0.3
COL9A3-211ENST00000477612 MRAPQ8TCY5 172 aa16.94■□□□□ 0.3
COL9A3-211ENST00000477612 DUX3Q96PT4 197 aa16.94■□□□□ 0.3
COL9A3-211ENST00000477612 GINS4Q9BRT9 223 aa16.94■□□□□ 0.3
COL9A3-211ENST00000477612 METTL1Q9UBP6 276 aaKnown RBP16.94■□□□□ 0.3
COL9A3-211ENST00000477612 A0A0A6YYH2 397 aa16.93■□□□□ 0.3
COL9A3-211ENST00000477612 TMEM235A6NFC5 223 aa16.93■□□□□ 0.3
COL9A3-211ENST00000477612 A6NJ64 397 aa16.93■□□□□ 0.3
COL9A3-211ENST00000477612 I3L521 148 aa16.93■□□□□ 0.3
COL9A3-211ENST00000477612 SOX15O60248 233 aa16.93■□□□□ 0.3
COL9A3-211ENST00000477612 CRYGBP07316 175 aa16.93■□□□□ 0.3
COL9A3-211ENST00000477612 KRTAP10-11P60412 298 aa16.93■□□□□ 0.3
COL9A3-211ENST00000477612 TMEM267Q0VDI3 215 aaPredicted RBP16.93■□□□□ 0.3
COL9A3-211ENST00000477612 DEFB136Q30KP8 78 aa16.93■□□□□ 0.3
COL9A3-211ENST00000477612 TIMM50Q3ZCQ8 353 aa16.93■□□□□ 0.3
COL9A3-211ENST00000477612 TMEM177Q53S58 311 aa16.93■□□□□ 0.3
COL9A3-211ENST00000477612 OR5H6Q8NGV6 325 aa16.93■□□□□ 0.3
COL9A3-211ENST00000477612 SLC25A38Q96DW6 304 aa16.93■□□□□ 0.3
COL9A3-211ENST00000477612 A0A087WXM4 84 aa16.92■□□□□ 0.3
COL9A3-211ENST00000477612 SSX5O60225 188 aa16.92■□□□□ 0.3
COL9A3-211ENST00000477612 TNFAIP8O95379 198 aa16.92■□□□□ 0.3
COL9A3-211ENST00000477612 IGLV2-23P01705 113 aa16.92■□□□□ 0.3
COL9A3-211ENST00000477612 RRASP10301 218 aa16.92■□□□□ 0.3
COL9A3-211ENST00000477612 IDNKQ5T6J7 187 aa16.92■□□□□ 0.3
COL9A3-211ENST00000477612 CNIH2Q6PI25 160 aa16.92■□□□□ 0.3
COL9A3-211ENST00000477612 NUDCD2Q8WVJ2 157 aa16.92■□□□□ 0.3
COL9A3-211ENST00000477612 DDB2Q92466 427 aa16.92■□□□□ 0.3
COL9A3-211ENST00000477612 YIPF6Q96EC8 236 aa16.92■□□□□ 0.3
COL9A3-211ENST00000477612 ST6GALNAC5Q9BVH7 336 aa16.92■□□□□ 0.3
COL9A3-211ENST00000477612 SPATA2Q9UM82 520 aa16.92■□□□□ 0.3
COL9A3-211ENST00000477612 FOXA2Q9Y261 457 aaPredicted RBP16.92■□□□□ 0.3
COL9A3-211ENST00000477612 VSIG4Q9Y279 399 aa16.92■□□□□ 0.3
COL9A3-211ENST00000477612 TNCP24821 2201 aa16.91■□□□□ 0.3
COL9A3-211ENST00000477612 A0A1W2PN81 502 aa16.91■□□□□ 0.3
COL9A3-211ENST00000477612 CA2P00918 260 aa16.91■□□□□ 0.3
COL9A3-211ENST00000477612 HLA-DQB1P01920 261 aa16.91■□□□□ 0.3
COL9A3-211ENST00000477612 DUTP33316 252 aaKnown RBP16.91■□□□□ 0.3
COL9A3-211ENST00000477612 CHRNA7P36544 502 aa16.91■□□□□ 0.3
COL9A3-211ENST00000477612 LUMP51884 338 aaPredicted RBP16.91■□□□□ 0.3
COL9A3-211ENST00000477612 GNG2P59768 71 aa16.91■□□□□ 0.3
COL9A3-211ENST00000477612 ECSCRQ19T08 205 aa16.91■□□□□ 0.3
COL9A3-211ENST00000477612 PPP1R27Q86WC6 154 aa16.91■□□□□ 0.3
COL9A3-211ENST00000477612 TSPAN14Q8NG11 270 aa16.91■□□□□ 0.3
COL9A3-211ENST00000477612 OR11H1Q8NG94 326 aa16.91■□□□□ 0.3
COL9A3-211ENST00000477612 ADTRPQ96IZ2 230 aa16.91■□□□□ 0.3
COL9A3-211ENST00000477612 GNB4Q9HAV0 340 aa16.91■□□□□ 0.3
COL9A3-211ENST00000477612 OR2W1Q9Y3N9 320 aa16.91■□□□□ 0.3
COL9A3-211ENST00000477612 RBM7Q9Y580 266 aaKnown RBP16.91■□□□□ 0.3
COL9A3-211ENST00000477612 TRIM64CA6NLI5 447 aa16.9■□□□□ 0.3
COL9A3-211ENST00000477612 SLC25A17O43808 307 aa16.9■□□□□ 0.3
COL9A3-211ENST00000477612 SSBP2P81877 361 aaPredicted RBP16.9■□□□□ 0.3
COL9A3-211ENST00000477612 PYHIN1Q6K0P9 492 aa16.9■□□□□ 0.3
COL9A3-211ENST00000477612 CROCCP3Q8IVE0 287 aa16.9■□□□□ 0.3
COL9A3-211ENST00000477612 OR5M8Q8NGP6 311 aa16.9■□□□□ 0.3
COL9A3-211ENST00000477612 DPF1Q92782 380 aa16.9■□□□□ 0.3
COL9A3-211ENST00000477612 ANXA10Q9UJ72 324 aa16.9■□□□□ 0.3
COL9A3-211ENST00000477612 K7EIL1 84 aa16.89■□□□□ 0.29
COL9A3-211ENST00000477612 HOXD3P31249 432 aaPredicted RBP16.89■□□□□ 0.29
COL9A3-211ENST00000477612 ZNF645Q8N7E2 425 aa16.89■□□□□ 0.29
COL9A3-211ENST00000477612 BVESQ8NE79 360 aa16.89■□□□□ 0.29
COL9A3-211ENST00000477612 CLCC1Q96S66 551 aa16.89■□□□□ 0.29
COL9A3-211ENST00000477612 VCX3AQ9NNX9 186 aa16.89■□□□□ 0.29
COL9A3-211ENST00000477612 TPSG1Q9NRR2 321 aa16.89■□□□□ 0.29
COL9A3-211ENST00000477612 SRRM4A7MD48 611 aaKnown RBP16.88■□□□□ 0.29
COL9A3-211ENST00000477612 LINC00473A8K010 186 aa16.88■□□□□ 0.29
COL9A3-211ENST00000477612 ARPC1BO15143 372 aaKnown RBP16.88■□□□□ 0.29
COL9A3-211ENST00000477612 AIREO43918 545 aa16.88■□□□□ 0.29
COL9A3-211ENST00000477612 SLC22A5O76082 557 aa16.88■□□□□ 0.29
COL9A3-211ENST00000477612 RTL8BQ17RB0 113 aa16.88■□□□□ 0.29
COL9A3-211ENST00000477612 ACTBL2Q562R1 376 aa16.88■□□□□ 0.29
COL9A3-211ENST00000477612 ASPHD1Q5U4P2 390 aa16.88■□□□□ 0.29
COL9A3-211ENST00000477612 UNQ5815/PRO19632Q6UWF5 114 aa16.88■□□□□ 0.29
COL9A3-211ENST00000477612 LFNGQ8NES3 379 aa16.88■□□□□ 0.29
Retrieved 100 of 20,778 RNA–protein pairs in 55.2 ms