RNA–Protein interactions for RNA: ENST00000473829.1

PTCD3-210, Transcript of pentatricopeptide repeat domain 3, humanhuman

TSL 3

Gene PTCD3, Length 587 nt, Biotype retained intron, Subcellular localisation Endoplasmic reticulum, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
PTCD3-210ENST00000473829 ELK1P19419 428 aa14.86□□□□□ -0.03
PTCD3-210ENST00000473829 DUTP33316 252 aaKnown RBP14.86□□□□□ -0.03
PTCD3-210ENST00000473829 LUMP51884 338 aaPredicted RBP14.86□□□□□ -0.03
PTCD3-210ENST00000473829 ARPC4P59998 168 aa14.86□□□□□ -0.03
PTCD3-210ENST00000473829 SPCS2Q15005 226 aa14.86□□□□□ -0.03
PTCD3-210ENST00000473829 PSG5Q15238 335 aa14.86□□□□□ -0.03
PTCD3-210ENST00000473829 LIN54Q6MZP7 749 aa14.86□□□□□ -0.03
PTCD3-210ENST00000473829 LCNL1Q6ZST4 164 aa14.86□□□□□ -0.03
PTCD3-210ENST00000473829 C18orf65Q6ZTR6 163 aa14.86□□□□□ -0.03
PTCD3-210ENST00000473829 ZNF645Q8N7E2 425 aa14.86□□□□□ -0.03
PTCD3-210ENST00000473829 OR4F17Q8NGA8 305 aa14.86□□□□□ -0.03
PTCD3-210ENST00000473829 ACOT12Q8WYK0 555 aa14.86□□□□□ -0.03
PTCD3-210ENST00000473829 DDB2Q92466 427 aa14.86□□□□□ -0.03
PTCD3-210ENST00000473829 OR4F4Q96R69 305 aa14.86□□□□□ -0.03
PTCD3-210ENST00000473829 OR51J1Q9H342 316 aa14.86□□□□□ -0.03
PTCD3-210ENST00000473829 PARP11Q9NR21 331 aa14.86□□□□□ -0.03
PTCD3-210ENST00000473829 ANAPC10Q9UM13 185 aa14.86□□□□□ -0.03
PTCD3-210ENST00000473829 FBXO7Q9Y3I1 522 aa14.86□□□□□ -0.03
PTCD3-210ENST00000473829 G3V318 75 aa14.85□□□□□ -0.03
PTCD3-210ENST00000473829 CBX5P45973 191 aa14.85□□□□□ -0.03
PTCD3-210ENST00000473829 THBS3P49746 956 aa14.85□□□□□ -0.03
PTCD3-210ENST00000473829 RPS16P62249 146 aaKnown RBP14.85□□□□□ -0.03
PTCD3-210ENST00000473829 SLC35B1P78383 322 aa14.85□□□□□ -0.03
PTCD3-210ENST00000473829 CLVS1Q8IUQ0 354 aaPredicted RBP14.85□□□□□ -0.03
PTCD3-210ENST00000473829 BVESQ8NE79 360 aa14.85□□□□□ -0.03
PTCD3-210ENST00000473829 RNF5Q99942 180 aa14.85□□□□□ -0.03
PTCD3-210ENST00000473829 METTL1Q9UBP6 276 aaKnown RBP14.85□□□□□ -0.03
PTCD3-210ENST00000473829 ZNF580Q9UK33 172 aa14.85□□□□□ -0.03
PTCD3-210ENST00000473829 NOTCH1P46531 2555 aa14.85□□□□□ -0.03
PTCD3-210ENST00000473829 IGLV2-23P01705 113 aa14.84□□□□□ -0.03
PTCD3-210ENST00000473829 AADACP22760 399 aa14.84□□□□□ -0.03
PTCD3-210ENST00000473829 RPL23AP62750 156 aaKnown RBP14.84□□□□□ -0.03
PTCD3-210ENST00000473829 PLGLAQ15195 96 aa14.84□□□□□ -0.03
PTCD3-210ENST00000473829 COMMD1Q8N668 190 aa14.84□□□□□ -0.03
PTCD3-210ENST00000473829 FLYWCH2Q96CP2 140 aaKnown RBP14.84□□□□□ -0.03
PTCD3-210ENST00000473829 CMTM3Q96MX0 182 aa14.84□□□□□ -0.03
PTCD3-210ENST00000473829 CLCC1Q96S66 551 aa14.84□□□□□ -0.03
PTCD3-210ENST00000473829 IFT46Q9NQC8 304 aa14.84□□□□□ -0.03
PTCD3-210ENST00000473829 NECAP2Q9NVZ3 263 aa14.84□□□□□ -0.03
PTCD3-210ENST00000473829 WSB1Q9Y6I7 421 aa14.84□□□□□ -0.03
PTCD3-210ENST00000473829 SLC25A17O43808 307 aa14.83□□□□□ -0.04
PTCD3-210ENST00000473829 SPDEFO95238 335 aa14.83□□□□□ -0.04
PTCD3-210ENST00000473829 IGHG4P01861 327 aa14.83□□□□□ -0.04
PTCD3-210ENST00000473829 RPLP1P05386 114 aaKnown RBP14.83□□□□□ -0.04
PTCD3-210ENST00000473829 OR5H8P0DN80 308 aa14.83□□□□□ -0.04
PTCD3-210ENST00000473829 ZNF182P17025 639 aaPredicted RBP14.83□□□□□ -0.04
PTCD3-210ENST00000473829 VDAC1P21796 283 aa14.83□□□□□ -0.04
PTCD3-210ENST00000473829 FCGR2CP31995 323 aa14.83□□□□□ -0.04
PTCD3-210ENST00000473829 RPL30P62888 115 aaKnown RBP14.83□□□□□ -0.04
PTCD3-210ENST00000473829 CX3CL1P78423 397 aa14.83□□□□□ -0.04
PTCD3-210ENST00000473829 EIF4EBP1Q13541 118 aaPredicted RBP14.83□□□□□ -0.04
PTCD3-210ENST00000473829 TEX38Q6PEX7 206 aa14.83□□□□□ -0.04
PTCD3-210ENST00000473829 OR5AP2Q8NGF4 316 aa14.83□□□□□ -0.04
PTCD3-210ENST00000473829 TSNAXQ99598 290 aaKnown RBP14.83□□□□□ -0.04
PTCD3-210ENST00000473829 MRPS7Q9Y2R9 242 aaKnown RBP14.83□□□□□ -0.04
PTCD3-210ENST00000473829 RBMX2Q9Y388 322 aaKnown RBP14.83□□□□□ -0.04
PTCD3-210ENST00000473829 SRRM4A7MD48 611 aaKnown RBP14.82□□□□□ -0.04
PTCD3-210ENST00000473829 CA2P00918 260 aa14.82□□□□□ -0.04
PTCD3-210ENST00000473829 PF4V1P10720 104 aa14.82□□□□□ -0.04
PTCD3-210ENST00000473829 EGR2P11161 476 aaPredicted RBP14.82□□□□□ -0.04
PTCD3-210ENST00000473829 PPIFP30405 207 aaKnown RBP14.82□□□□□ -0.04
PTCD3-210ENST00000473829 PRSS3P35030 304 aa14.82□□□□□ -0.04
PTCD3-210ENST00000473829 FOXE3Q13461 319 aa14.82□□□□□ -0.04
PTCD3-210ENST00000473829 TMEM177Q53S58 311 aa14.82□□□□□ -0.04
PTCD3-210ENST00000473829 C19orf54Q5BKX5 351 aa14.82□□□□□ -0.04
PTCD3-210ENST00000473829 ETV3LQ6ZN32 361 aa14.82□□□□□ -0.04
PTCD3-210ENST00000473829 C1QL4Q86Z23 238 aa14.82□□□□□ -0.04
PTCD3-210ENST00000473829 SNX29P2Q8IUI4 249 aa14.82□□□□□ -0.04
PTCD3-210ENST00000473829 RNF152Q8N8N0 203 aa14.82□□□□□ -0.04
PTCD3-210ENST00000473829 ADTRPQ96IZ2 230 aa14.82□□□□□ -0.04
PTCD3-210ENST00000473829 HARBI1Q96MB7 349 aa14.82□□□□□ -0.04
PTCD3-210ENST00000473829 GPHA2Q96T91 129 aa14.82□□□□□ -0.04
PTCD3-210ENST00000473829 GON7Q9BXV9 100 aa14.82□□□□□ -0.04
PTCD3-210ENST00000473829 TRAV41A0A0B4J266 112 aa14.81□□□□□ -0.04
PTCD3-210ENST00000473829 PPYP01298 95 aa14.81□□□□□ -0.04
PTCD3-210ENST00000473829 CRYGBP07316 175 aa14.81□□□□□ -0.04
PTCD3-210ENST00000473829 NAT1P18440 290 aa14.81□□□□□ -0.04
PTCD3-210ENST00000473829 PSMB8P28062 276 aa14.81□□□□□ -0.04
PTCD3-210ENST00000473829 RPL5P46777 297 aaKnown RBP14.81□□□□□ -0.04
PTCD3-210ENST00000473829 SSBP2P81877 361 aaPredicted RBP14.81□□□□□ -0.04
PTCD3-210ENST00000473829 CDK10Q15131 360 aa14.81□□□□□ -0.04
PTCD3-210ENST00000473829 RTL8BQ17RB0 113 aa14.81□□□□□ -0.04
PTCD3-210ENST00000473829 OR2B11Q5JQS5 317 aa14.81□□□□□ -0.04
PTCD3-210ENST00000473829 ZNF660Q6AZW8 331 aaPredicted RBP14.81□□□□□ -0.04
PTCD3-210ENST00000473829 MZT2AQ6P582 158 aa14.81□□□□□ -0.04
PTCD3-210ENST00000473829 KCTD9Q7L273 389 aa14.81□□□□□ -0.04
PTCD3-210ENST00000473829 GPX8Q8TED1 209 aa14.81□□□□□ -0.04
PTCD3-210ENST00000473829 AP3S1Q92572 193 aa14.81□□□□□ -0.04
PTCD3-210ENST00000473829 FAM103A1Q9BTL3 118 aaKnown RBP14.81□□□□□ -0.04
PTCD3-210ENST00000473829 G3V4G9 280 aa14.8□□□□□ -0.04
PTCD3-210ENST00000473829 ARPC1BO15143 372 aaKnown RBP14.8□□□□□ -0.04
PTCD3-210ENST00000473829 CRYZL1O95825 349 aa14.8□□□□□ -0.04
PTCD3-210ENST00000473829 ELANEP08246 267 aa14.8□□□□□ -0.04
PTCD3-210ENST00000473829 CRIP2P52943 208 aaPredicted RBP14.8□□□□□ -0.04
PTCD3-210ENST00000473829 TAGLNQ01995 201 aaKnown RBP14.8□□□□□ -0.04
PTCD3-210ENST00000473829 PJVKQ0ZLH3 352 aa14.8□□□□□ -0.04
PTCD3-210ENST00000473829 ECSCRQ19T08 205 aa14.8□□□□□ -0.04
PTCD3-210ENST00000473829 MRGPRG-AS1Q2M3A8 158 aa14.8□□□□□ -0.04
PTCD3-210ENST00000473829 C8orf86Q6ZUL3 223 aa14.8□□□□□ -0.04
PTCD3-210ENST00000473829 KLHL30-AS1Q8NEE0 82 aa14.8□□□□□ -0.04
Retrieved 100 of 20,778 RNA–protein pairs in 32.3 ms