RNA–Protein interactions for RNA: ENST00000472880.1

COL9A3-210, Transcript of collagen type IX alpha 3 chain, humanhuman

TSL 3

Gene COL9A3, Length 959 nt, Biotype retained intron, Subcellular localisation Cytosol .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
COL9A3-210ENST00000472880 RANBP1P43487 201 aa15.24■□□□□ 0.03
COL9A3-210ENST00000472880 ZNF383Q8NA42 475 aa15.24■□□□□ 0.03
COL9A3-210ENST00000472880 OR56B1Q8NGI3 324 aa15.24■□□□□ 0.03
COL9A3-210ENST00000472880 GRPEL2Q8TAA5 225 aa15.24■□□□□ 0.03
COL9A3-210ENST00000472880 OR4C12Q96R67 309 aa15.24■□□□□ 0.03
COL9A3-210ENST00000472880 PECRQ9BY49 303 aa15.24■□□□□ 0.03
COL9A3-210ENST00000472880 RYR3Q15413 4870 aa15.24■□□□□ 0.03
COL9A3-210ENST00000472880 SLC25A17O43808 307 aa15.23■□□□□ 0.03
COL9A3-210ENST00000472880 TRGV3P03979 118 aa15.23■□□□□ 0.03
COL9A3-210ENST00000472880 CALRP27797 417 aaKnown RBP15.23■□□□□ 0.03
COL9A3-210ENST00000472880 TMEM50BP56557 158 aa15.23■□□□□ 0.03
COL9A3-210ENST00000472880 CLDN12P56749 244 aa15.23■□□□□ 0.03
COL9A3-210ENST00000472880 MRPS15P82914 257 aaKnown RBP15.23■□□□□ 0.03
COL9A3-210ENST00000472880 FABP5Q01469 135 aa15.23■□□□□ 0.03
COL9A3-210ENST00000472880 SSX1Q16384 188 aa15.23■□□□□ 0.03
COL9A3-210ENST00000472880 ZNF355PQ9NSJ1 428 aa15.23■□□□□ 0.03
COL9A3-210ENST00000472880 RDH8Q9NYR8 311 aa15.23■□□□□ 0.03
COL9A3-210ENST00000472880 IGKV1-6A0A0C4DH72 117 aa15.22■□□□□ 0.03
COL9A3-210ENST00000472880 TRDCB7Z8K6 153 aa15.22■□□□□ 0.03
COL9A3-210ENST00000472880 M0R1X1 148 aa15.22■□□□□ 0.03
COL9A3-210ENST00000472880 ARPC1BO15143 372 aaKnown RBP15.22■□□□□ 0.03
COL9A3-210ENST00000472880 PROP1O75360 226 aa15.22■□□□□ 0.03
COL9A3-210ENST00000472880 SERPINB10P48595 397 aa15.22■□□□□ 0.03
COL9A3-210ENST00000472880 FXYD3Q14802 87 aa15.22■□□□□ 0.03
COL9A3-210ENST00000472880 OVCH2Q7RTZ1 564 aa15.22■□□□□ 0.03
COL9A3-210ENST00000472880 SBSPONQ8IVN8 264 aa15.22■□□□□ 0.03
COL9A3-210ENST00000472880 ZNF436-AS1Q8NC38 126 aaPredicted RBP15.22■□□□□ 0.03
COL9A3-210ENST00000472880 FAM3DQ96BQ1 224 aa15.22■□□□□ 0.03
COL9A3-210ENST00000472880 RCHY1Q96PM5 261 aa15.22■□□□□ 0.03
COL9A3-210ENST00000472880 YTHDF1Q9BYJ9 559 aaKnown RBP15.22■□□□□ 0.03
COL9A3-210ENST00000472880 SLC35D1Q9NTN3 355 aa15.22■□□□□ 0.03
COL9A3-210ENST00000472880 FRMD6-AS1P0C7T7 363 aa15.21■□□□□ 0.03
COL9A3-210ENST00000472880 SNRPBP14678 240 aaKnown RBP15.21■□□□□ 0.03
COL9A3-210ENST00000472880 LINC00205P59089 165 aa15.21■□□□□ 0.03
COL9A3-210ENST00000472880 PLAC9Q5JTB6 97 aa15.21■□□□□ 0.03
COL9A3-210ENST00000472880 SPARTQ8N0X7 666 aa15.21■□□□□ 0.03
COL9A3-210ENST00000472880 OR4A4PQ8NGN8 299 aa15.21■□□□□ 0.03
COL9A3-210ENST00000472880 RHOVQ96L33 236 aa15.21■□□□□ 0.03
COL9A3-210ENST00000472880 ELOVL1Q9BW60 279 aa15.21■□□□□ 0.03
COL9A3-210ENST00000472880 NDUFB11Q9NX14 153 aa15.21■□□□□ 0.03
COL9A3-210ENST00000472880 SORL1Q92673 2214 aa15.2■□□□□ 0.02
COL9A3-210ENST00000472880 FABP7O15540 132 aa15.2■□□□□ 0.02
COL9A3-210ENST00000472880 CNIH1O95406 144 aa15.2■□□□□ 0.02
COL9A3-210ENST00000472880 CD3GP09693 182 aa15.2■□□□□ 0.02
COL9A3-210ENST00000472880 SRSF7Q16629 238 aaKnown RBP eCLIP15.2■□□□□ 0.02
COL9A3-210ENST00000472880 C2orf76Q3KRA6 126 aa15.2■□□□□ 0.02
COL9A3-210ENST00000472880 UBE2UQ5VVX9 321 aa15.2■□□□□ 0.02
COL9A3-210ENST00000472880 POC5Q8NA72 575 aa15.2■□□□□ 0.02
COL9A3-210ENST00000472880 OR2D2Q9H210 308 aa15.2■□□□□ 0.02
COL9A3-210ENST00000472880 STUB1Q9UNE7 303 aa15.2■□□□□ 0.02
COL9A3-210ENST00000472880 V9GY05 133 aa15.2■□□□□ 0.02
COL9A3-210ENST00000472880 C13orf42A0A1B0GVH6 325 aa15.19■□□□□ 0.02
COL9A3-210ENST00000472880 TRIM64CA6NLI5 447 aa15.19■□□□□ 0.02
COL9A3-210ENST00000472880 H3BUA1 57 aa15.19■□□□□ 0.02
COL9A3-210ENST00000472880 BET1O15155 118 aa15.19■□□□□ 0.02
COL9A3-210ENST00000472880 PSMD7P51665 324 aa15.19■□□□□ 0.02
COL9A3-210ENST00000472880 CBX3Q13185 183 aa15.19■□□□□ 0.02
COL9A3-210ENST00000472880 HES5Q5TA89 166 aa15.19■□□□□ 0.02
COL9A3-210ENST00000472880 MUC7Q8TAX7 377 aa15.19■□□□□ 0.02
COL9A3-210ENST00000472880 RAB3CQ96E17 227 aa15.19■□□□□ 0.02
COL9A3-210ENST00000472880 RSRP1Q9BUV0 290 aa15.19■□□□□ 0.02
COL9A3-210ENST00000472880 RANGRFQ9HD47 186 aaPredicted RBP15.19■□□□□ 0.02
COL9A3-210ENST00000472880 RAB22AQ9UL26 194 aa15.19■□□□□ 0.02
COL9A3-210ENST00000472880 STAB2Q8WWQ8 2551 aa15.19■□□□□ 0.02
COL9A3-210ENST00000472880 TMEM272A0A1B0GTI8 110 aa15.18■□□□□ 0.02
COL9A3-210ENST00000472880 FCGR3AP08637 254 aa15.18■□□□□ 0.02
COL9A3-210ENST00000472880 ZP3P21754 424 aa15.18■□□□□ 0.02
COL9A3-210ENST00000472880 HAPLN4Q86UW8 402 aa15.18■□□□□ 0.02
COL9A3-210ENST00000472880 OR10J5Q8NHC4 309 aa15.18■□□□□ 0.02
COL9A3-210ENST00000472880 FCGR1BQ92637 280 aa15.18■□□□□ 0.02
COL9A3-210ENST00000472880 HARBI1Q96MB7 349 aa15.18■□□□□ 0.02
COL9A3-210ENST00000472880 CABLES2Q9BTV7 478 aa15.18■□□□□ 0.02
COL9A3-210ENST00000472880 ZMAT4Q9H898 229 aa15.18■□□□□ 0.02
COL9A3-210ENST00000472880 A0A0G2JLM5 398 aa15.17■□□□□ 0.02
COL9A3-210ENST00000472880 LDLRAD4O15165 306 aa15.17■□□□□ 0.02
COL9A3-210ENST00000472880 GADD45AP24522 165 aa15.17■□□□□ 0.02
COL9A3-210ENST00000472880 PSMB9P28065 219 aa15.17■□□□□ 0.02
COL9A3-210ENST00000472880 LGALS7P47929 136 aa15.17■□□□□ 0.02
COL9A3-210ENST00000472880 PLA2G7Q13093 441 aa15.17■□□□□ 0.02
COL9A3-210ENST00000472880 IGSF11Q5DX21 431 aa15.17■□□□□ 0.02
COL9A3-210ENST00000472880 ZNF773Q6PK81 442 aa15.17■□□□□ 0.02
COL9A3-210ENST00000472880 ANKRD13BQ86YJ7 626 aa15.17■□□□□ 0.02
COL9A3-210ENST00000472880 OR5T1Q8NG75 326 aa15.17■□□□□ 0.02
COL9A3-210ENST00000472880 SDHAF2Q9NX18 166 aa15.17■□□□□ 0.02
COL9A3-210ENST00000472880 HUWE1Q7Z6Z7 4374 aaKnown RBP15.17■□□□□ 0.02
COL9A3-210ENST00000472880 TRDV1A0A1B0GX56 115 aa15.16■□□□□ 0.02
COL9A3-210ENST00000472880 PDCD5O14737 125 aa15.16■□□□□ 0.02
COL9A3-210ENST00000472880 IGLV2-23P01705 113 aa15.16■□□□□ 0.02
COL9A3-210ENST00000472880 SSBP2P81877 361 aaPredicted RBP15.16■□□□□ 0.02
COL9A3-210ENST00000472880 TAGLNQ01995 201 aaKnown RBP15.16■□□□□ 0.02
COL9A3-210ENST00000472880 PJVKQ0ZLH3 352 aa15.16■□□□□ 0.02
COL9A3-210ENST00000472880 RTL8BQ17RB0 113 aa15.16■□□□□ 0.02
COL9A3-210ENST00000472880 MOGAT2Q3SYC2 334 aa15.16■□□□□ 0.02
COL9A3-210ENST00000472880 TMEM68Q96MH6 324 aa15.16■□□□□ 0.02
COL9A3-210ENST00000472880 KCNK7Q9Y2U2 307 aa15.16■□□□□ 0.02
COL9A3-210ENST00000472880 RBM7Q9Y580 266 aaKnown RBP15.16■□□□□ 0.02
COL9A3-210ENST00000472880 A0A075B6Q4 140 aa15.15■□□□□ 0.02
COL9A3-210ENST00000472880 TRBV6-7A0A0A0MS04 114 aa15.15■□□□□ 0.02
COL9A3-210ENST00000472880 ANKRD34BA5PLL1 514 aa15.15■□□□□ 0.02
COL9A3-210ENST00000472880 SHOXO15266 292 aa15.15■□□□□ 0.02
Retrieved 100 of 20,778 RNA–protein pairs in 45.4 ms