RNA–Protein interactions for RNA: ENST00000469550.6

HDAC3-205, Transcript of histone deacetylase 3, humanhuman

TSL 1 (best)

Gene HDAC3, Length 1,952 nt, Biotype retained intron, Subcellular localisation Cytosol, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
HDAC3-205ENST00000469550 PSMB3P49720 205 aa8.1□□□□□ -1.11
HDAC3-205ENST00000469550 IDH3GP51553 393 aaPredicted RBP8.1□□□□□ -1.11
HDAC3-205ENST00000469550 ADORA2A-AS1P86434 159 aa8.1□□□□□ -1.11
HDAC3-205ENST00000469550 PMP22Q01453 160 aa8.1□□□□□ -1.11
HDAC3-205ENST00000469550 GBGT1Q8N5D6 347 aa8.1□□□□□ -1.11
HDAC3-205ENST00000469550 PIGCQ92535 297 aa8.1□□□□□ -1.11
HDAC3-205ENST00000469550 LHX4Q969G2 390 aa8.1□□□□□ -1.11
HDAC3-205ENST00000469550 ZNF837Q96EG3 531 aaPredicted RBP8.1□□□□□ -1.11
HDAC3-205ENST00000469550 PCGF1Q9BSM1 259 aa8.1□□□□□ -1.11
HDAC3-205ENST00000469550 MANBALQ9NQG1 85 aa8.1□□□□□ -1.11
HDAC3-205ENST00000469550 SLC39A9Q9NUM3 307 aa8.1□□□□□ -1.11
HDAC3-205ENST00000469550 PDZD2O15018 2839 aa8.09□□□□□ -1.11
HDAC3-205ENST00000469550 H3BP45 60 aa8.09□□□□□ -1.11
HDAC3-205ENST00000469550 MBP02144 154 aa8.09□□□□□ -1.11
HDAC3-205ENST00000469550 CD99P14209 185 aa8.09□□□□□ -1.11
HDAC3-205ENST00000469550 COX6B1P14854 86 aa8.09□□□□□ -1.11
HDAC3-205ENST00000469550 ZNF32P17041 273 aa8.09□□□□□ -1.11
HDAC3-205ENST00000469550 DSCR4P56555 118 aaPredicted RBP8.09□□□□□ -1.11
HDAC3-205ENST00000469550 PCBD1P61457 104 aa8.09□□□□□ -1.11
HDAC3-205ENST00000469550 ERVS71-1P61550 626 aa8.09□□□□□ -1.11
HDAC3-205ENST00000469550 ARL16Q0P5N6 197 aa8.09□□□□□ -1.11
HDAC3-205ENST00000469550 GAGE1Q13065 139 aa8.09□□□□□ -1.11
HDAC3-205ENST00000469550 C3AR1Q16581 482 aa8.09□□□□□ -1.11
HDAC3-205ENST00000469550 KCNIP4Q6PIL6 250 aa8.09□□□□□ -1.11
HDAC3-205ENST00000469550 BTNL3Q6UXE8 466 aa8.09□□□□□ -1.11
HDAC3-205ENST00000469550 HAPLN4Q86UW8 402 aa8.09□□□□□ -1.11
HDAC3-205ENST00000469550 TMEM178AQ8NBL3 297 aa8.09□□□□□ -1.11
HDAC3-205ENST00000469550 TAF15Q92804 592 aaKnown RBP eCLIP8.09□□□□□ -1.11
HDAC3-205ENST00000469550 UCN2Q96RP3 112 aa8.09□□□□□ -1.11
HDAC3-205ENST00000469550 DEFB126Q9BYW3 111 aa8.09□□□□□ -1.11
HDAC3-205ENST00000469550 FKBP11Q9NYL4 201 aa8.09□□□□□ -1.11
HDAC3-205ENST00000469550 OR2W1Q9Y3N9 320 aa8.09□□□□□ -1.11
HDAC3-205ENST00000469550 OTOGQ6ZRI0 2925 aa8.08□□□□□ -1.12
HDAC3-205ENST00000469550 FAM90A26D6RGX4 464 aa8.08□□□□□ -1.12
HDAC3-205ENST00000469550 NPIPB11E5RHQ5 1161 aa8.08□□□□□ -1.12
HDAC3-205ENST00000469550 TNFSF11O14788 317 aa8.08□□□□□ -1.12
HDAC3-205ENST00000469550 NXPH3O95157 252 aa8.08□□□□□ -1.12
HDAC3-205ENST00000469550 OR4A8P0C604 315 aa8.08□□□□□ -1.12
HDAC3-205ENST00000469550 CD46P15529 392 aa8.08□□□□□ -1.12
HDAC3-205ENST00000469550 CNN1P51911 297 aaKnown RBP8.08□□□□□ -1.12
HDAC3-205ENST00000469550 RIPPLY3P57055 190 aa8.08□□□□□ -1.12
HDAC3-205ENST00000469550 RAC1P63000 192 aa8.08□□□□□ -1.12
HDAC3-205ENST00000469550 PSG4Q00888 419 aa8.08□□□□□ -1.12
HDAC3-205ENST00000469550 OR1C1Q15619 314 aa8.08□□□□□ -1.12
HDAC3-205ENST00000469550 Q6ZRM9 215 aa8.08□□□□□ -1.12
HDAC3-205ENST00000469550 LINC00596Q86U02 117 aa8.08□□□□□ -1.12
HDAC3-205ENST00000469550 MRPL41Q8IXM3 137 aaKnown RBP8.08□□□□□ -1.12
HDAC3-205ENST00000469550 C17orf78Q8N4C9 275 aa8.08□□□□□ -1.12
HDAC3-205ENST00000469550 RPP25LQ8N5L8 163 aaKnown RBP8.08□□□□□ -1.12
HDAC3-205ENST00000469550 MRPL30Q8TCC3 161 aaKnown RBP8.08□□□□□ -1.12
HDAC3-205ENST00000469550 TMEM37Q8WXS4 190 aa8.08□□□□□ -1.12
HDAC3-205ENST00000469550 OR4C12Q96R67 309 aa8.08□□□□□ -1.12
HDAC3-205ENST00000469550 OR2H1Q9GZK4 316 aa8.08□□□□□ -1.12
HDAC3-205ENST00000469550 PRDM14Q9GZV8 571 aa8.08□□□□□ -1.12
HDAC3-205ENST00000469550 WNT5BQ9H1J7 359 aa8.08□□□□□ -1.12
HDAC3-205ENST00000469550 PARLQ9H300 379 aa8.08□□□□□ -1.12
HDAC3-205ENST00000469550 PLK3Q9H4B4 646 aa8.08□□□□□ -1.12
HDAC3-205ENST00000469550 FUT9Q9Y231 359 aa8.08□□□□□ -1.12
HDAC3-205ENST00000469550 FBN2P35556 2912 aa8.08□□□□□ -1.12
HDAC3-205ENST00000469550 IGHV3-15A0A0B4J1V0 119 aa8.08□□□□□ -1.12
HDAC3-205ENST00000469550 CTXND1A0A1B0GTU2 59 aa8.08□□□□□ -1.12
HDAC3-205ENST00000469550 LRRC3CA6NJW4 275 aa8.08□□□□□ -1.12
HDAC3-205ENST00000469550 GJE1A6NN92 205 aa8.08□□□□□ -1.12
HDAC3-205ENST00000469550 CD300LBA8K4G0 201 aa8.08□□□□□ -1.12
HDAC3-205ENST00000469550 SLC33A1O00400 549 aaPredicted RBP8.08□□□□□ -1.12
HDAC3-205ENST00000469550 ZIC3O60481 467 aa8.08□□□□□ -1.12
HDAC3-205ENST00000469550 NEURL1O76050 574 aa8.08□□□□□ -1.12
HDAC3-205ENST00000469550 WISP2O76076 250 aa8.08□□□□□ -1.12
HDAC3-205ENST00000469550 TUBG1P23258 451 aa8.08□□□□□ -1.12
HDAC3-205ENST00000469550 OR10J1P30954 320 aa8.08□□□□□ -1.12
HDAC3-205ENST00000469550 ATP6V1FQ16864 119 aa8.08□□□□□ -1.12
HDAC3-205ENST00000469550 RIPPLY2Q5TAB7 128 aa8.08□□□□□ -1.12
HDAC3-205ENST00000469550 TEX38Q6PEX7 206 aa8.08□□□□□ -1.12
HDAC3-205ENST00000469550 COLCA1Q6ZS62 124 aa8.08□□□□□ -1.12
HDAC3-205ENST00000469550 GPHA2Q96T91 129 aa8.08□□□□□ -1.12
HDAC3-205ENST00000469550 SPOCK3Q9BQ16 436 aa8.08□□□□□ -1.12
HDAC3-205ENST00000469550 C1QTNF5Q9BXJ0 243 aa8.08□□□□□ -1.12
HDAC3-205ENST00000469550 CACNG5Q9UF02 275 aa8.08□□□□□ -1.12
HDAC3-205ENST00000469550 A0A1W2PPQ1 181 aa8.07□□□□□ -1.12
HDAC3-205ENST00000469550 CLDN14O95500 239 aa8.07□□□□□ -1.12
HDAC3-205ENST00000469550 GYPAP02724 150 aa8.07□□□□□ -1.12
HDAC3-205ENST00000469550 SP1P08047 785 aa8.07□□□□□ -1.12
HDAC3-205ENST00000469550 PSG2P11465 335 aa8.07□□□□□ -1.12
HDAC3-205ENST00000469550 BCL3P20749 454 aa8.07□□□□□ -1.12
HDAC3-205ENST00000469550 RAC3P60763 192 aa8.07□□□□□ -1.12
HDAC3-205ENST00000469550 PRAMEF20Q5VT98 475 aa8.07□□□□□ -1.12
HDAC3-205ENST00000469550 TMEM14EPQ6UXP3 125 aa8.07□□□□□ -1.12
HDAC3-205ENST00000469550 NECAP1Q8NC96 275 aa8.07□□□□□ -1.12
HDAC3-205ENST00000469550 RPUSD4Q96CM3 377 aaKnown RBP8.07□□□□□ -1.12
HDAC3-205ENST00000469550 ATG101Q9BSB4 218 aa8.07□□□□□ -1.12
HDAC3-205ENST00000469550 HES7Q9BYE0 225 aa8.07□□□□□ -1.12
HDAC3-205ENST00000469550 A0A0J9YW62 118 aa8.06□□□□□ -1.12
HDAC3-205ENST00000469550 ANKHD1-EIF4EBP3H7C0V5 636 aaPredicted RBP8.06□□□□□ -1.12
HDAC3-205ENST00000469550 TNFSF12O43508 249 aa8.06□□□□□ -1.12
HDAC3-205ENST00000469550 IGKV1D-33P01593 117 aa8.06□□□□□ -1.12
HDAC3-205ENST00000469550 IGKV1-33P01594 117 aa8.06□□□□□ -1.12
HDAC3-205ENST00000469550 IGKV1-39P01597 117 aa8.06□□□□□ -1.12
HDAC3-205ENST00000469550 IGKV1D-39P04432 117 aa8.06□□□□□ -1.12
HDAC3-205ENST00000469550 RPL15P61313 204 aaKnown RBP8.06□□□□□ -1.12
HDAC3-205ENST00000469550 NRN1LQ496H8 165 aa8.06□□□□□ -1.12
Retrieved 100 of 20,778 RNA–protein pairs in 30.8 ms