RNA–Protein interactions for RNA: ENST00000469054.1

VPS13D-204, Transcript of vacuolar protein sorting 13 homolog D, humanhuman

TSL 3

Gene VPS13D, Length 567 nt, Biotype processed transcript, Subcellular localisation Cytoplasm, Endoplasmic reticulum, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
VPS13D-204ENST00000469054 ZNF107Q9UII5 783 aaPredicted RBP9.52□□□□□ -0.89
VPS13D-204ENST00000469054 RBMX2Q9Y388 322 aaKnown RBP9.52□□□□□ -0.89
VPS13D-204ENST00000469054 WASHC3Q9Y3C0 194 aa9.52□□□□□ -0.89
VPS13D-204ENST00000469054 NCBP2LA6PVI3 153 aaKnown RBP9.51□□□□□ -0.89
VPS13D-204ENST00000469054 H7C2Y5 167 aa9.51□□□□□ -0.89
VPS13D-204ENST00000469054 FGF16O43320 207 aa9.51□□□□□ -0.89
VPS13D-204ENST00000469054 GSTZ1O43708 216 aaPredicted RBP9.51□□□□□ -0.89
VPS13D-204ENST00000469054 APOA2P02652 100 aa9.51□□□□□ -0.89
VPS13D-204ENST00000469054 CD3DP04234 171 aa9.51□□□□□ -0.89
VPS13D-204ENST00000469054 TBPP20226 339 aa9.51□□□□□ -0.89
VPS13D-204ENST00000469054 DUTP33316 252 aaKnown RBP9.51□□□□□ -0.89
VPS13D-204ENST00000469054 ETV6P41212 452 aa9.51□□□□□ -0.89
VPS13D-204ENST00000469054 F2RL1P55085 397 aa9.51□□□□□ -0.89
VPS13D-204ENST00000469054 TAS2R19P59542 299 aa9.51□□□□□ -0.89
VPS13D-204ENST00000469054 HERV-K104P61576 105 aa9.51□□□□□ -0.89
VPS13D-204ENST00000469054 TSPAN5P62079 268 aa9.51□□□□□ -0.89
VPS13D-204ENST00000469054 TAGLNQ01995 201 aaKnown RBP9.51□□□□□ -0.89
VPS13D-204ENST00000469054 ABCA11PQ4W5N1 156 aa9.51□□□□□ -0.89
VPS13D-204ENST00000469054 Q6ZS46 218 aa9.51□□□□□ -0.89
VPS13D-204ENST00000469054 C5orf56Q8N8D9 126 aa9.51□□□□□ -0.89
VPS13D-204ENST00000469054 TMEM229BQ8NBD8 167 aa9.51□□□□□ -0.89
VPS13D-204ENST00000469054 ZBTB34Q8NCN2 500 aa9.51□□□□□ -0.89
VPS13D-204ENST00000469054 OR2T6Q8NHC8 308 aa9.51□□□□□ -0.89
VPS13D-204ENST00000469054 MOB3AQ96BX8 217 aa9.51□□□□□ -0.89
VPS13D-204ENST00000469054 ADTRPQ96IZ2 230 aa9.51□□□□□ -0.89
VPS13D-204ENST00000469054 RITA1Q96K30 269 aa9.51□□□□□ -0.89
VPS13D-204ENST00000469054 RNF5Q99942 180 aa9.51□□□□□ -0.89
VPS13D-204ENST00000469054 SLC5A7Q9GZV3 580 aa9.51□□□□□ -0.89
VPS13D-204ENST00000469054 BATF3Q9NR55 127 aa9.51□□□□□ -0.89
VPS13D-204ENST00000469054 CCL28Q9NRJ3 127 aa9.51□□□□□ -0.89
VPS13D-204ENST00000469054 SIGLEC9Q9Y336 463 aa9.51□□□□□ -0.89
VPS13D-204ENST00000469054 RNF114Q9Y508 228 aa9.51□□□□□ -0.89
VPS13D-204ENST00000469054 V9GYH0 126 aa9.51□□□□□ -0.89
VPS13D-204ENST00000469054 SH2D7A6NKC9 451 aaPredicted RBP9.5□□□□□ -0.89
VPS13D-204ENST00000469054 M0QYG6 137 aa9.5□□□□□ -0.89
VPS13D-204ENST00000469054 CD74P04233 296 aa9.5□□□□□ -0.89
VPS13D-204ENST00000469054 PTBP1P26599 531 aaKnown RBP eCLIP9.5□□□□□ -0.89
VPS13D-204ENST00000469054 EIF4EBP1Q13541 118 aaPredicted RBP9.5□□□□□ -0.89
VPS13D-204ENST00000469054 MMDQ15546 238 aa9.5□□□□□ -0.89
VPS13D-204ENST00000469054 MSMO1Q15800 293 aa9.5□□□□□ -0.89
VPS13D-204ENST00000469054 PYDC2Q56P42 97 aa9.5□□□□□ -0.89
VPS13D-204ENST00000469054 RNASE10Q5GAN6 216 aaKnown RBP9.5□□□□□ -0.89
VPS13D-204ENST00000469054 SPANXN2Q5MJ10 180 aa9.5□□□□□ -0.89
VPS13D-204ENST00000469054 TMEM17Q86X19 198 aa9.5□□□□□ -0.89
VPS13D-204ENST00000469054 PDPNQ86YL7 162 aa9.5□□□□□ -0.89
VPS13D-204ENST00000469054 Q8N9W7 124 aa9.5□□□□□ -0.89
VPS13D-204ENST00000469054 DDB2Q92466 427 aa9.5□□□□□ -0.89
VPS13D-204ENST00000469054 FLYWCH2Q96CP2 140 aaKnown RBP9.5□□□□□ -0.89
VPS13D-204ENST00000469054 HSD17B10Q99714 261 aaKnown RBP9.5□□□□□ -0.89
VPS13D-204ENST00000469054 TINAGL1Q9GZM7 467 aaPredicted RBP9.5□□□□□ -0.89
VPS13D-204ENST00000469054 SLC35D1Q9NTN3 355 aa9.5□□□□□ -0.89
VPS13D-204ENST00000469054 TAS2R8Q9NYW2 309 aa9.5□□□□□ -0.89
VPS13D-204ENST00000469054 LINC00473A8K010 186 aa9.49□□□□□ -0.89
VPS13D-204ENST00000469054 NBR2O15453 112 aa9.49□□□□□ -0.89
VPS13D-204ENST00000469054 RAB3DO95716 219 aa9.49□□□□□ -0.89
VPS13D-204ENST00000469054 IGKV1-16P04430 117 aa9.49□□□□□ -0.89
VPS13D-204ENST00000469054 IFNA6P05013 189 aa9.49□□□□□ -0.89
VPS13D-204ENST00000469054 CSF1P09603 554 aa9.49□□□□□ -0.89
VPS13D-204ENST00000469054 RRASP10301 218 aa9.49□□□□□ -0.89
VPS13D-204ENST00000469054 PROK1P58294 105 aa9.49□□□□□ -0.89
VPS13D-204ENST00000469054 RPS16P62249 146 aaKnown RBP9.49□□□□□ -0.89
VPS13D-204ENST00000469054 ZNF79Q15937 498 aa9.49□□□□□ -0.89
VPS13D-204ENST00000469054 RTL8BQ17RB0 113 aa9.49□□□□□ -0.89
VPS13D-204ENST00000469054 CNPY1Q3B7I2 92 aa9.49□□□□□ -0.89
VPS13D-204ENST00000469054 C9orf152Q5JTZ5 239 aa9.49□□□□□ -0.89
VPS13D-204ENST00000469054 STEAP1BQ6NZ63 245 aa9.49□□□□□ -0.89
VPS13D-204ENST00000469054 ZNF66Q6ZN08 573 aa9.49□□□□□ -0.89
VPS13D-204ENST00000469054 ZNF818PQ6ZRF7 136 aa9.49□□□□□ -0.89
VPS13D-204ENST00000469054 MFSD4AQ8N468 514 aa9.49□□□□□ -0.89
VPS13D-204ENST00000469054 ARRDC1Q8N5I2 433 aa9.49□□□□□ -0.89
VPS13D-204ENST00000469054 NPBQ8NG41 125 aa9.49□□□□□ -0.89
VPS13D-204ENST00000469054 BORCS5Q969J3 196 aa9.49□□□□□ -0.89
VPS13D-204ENST00000469054 RASL11BQ9BPW5 248 aa9.49□□□□□ -0.89
VPS13D-204ENST00000469054 THAP7Q9BT49 309 aaPredicted RBP9.49□□□□□ -0.89
VPS13D-204ENST00000469054 SERTAD4Q9NUC0 356 aa9.49□□□□□ -0.89
VPS13D-204ENST00000469054 LIN7CQ9NUP9 197 aaKnown RBP9.49□□□□□ -0.89
VPS13D-204ENST00000469054 NDUFA3O95167 84 aa9.48□□□□□ -0.89
VPS13D-204ENST00000469054 CNTFRP26992 372 aa9.48□□□□□ -0.89
VPS13D-204ENST00000469054 GNRHRP30968 328 aa9.48□□□□□ -0.89
VPS13D-204ENST00000469054 UCP3P55916 312 aa9.48□□□□□ -0.89
VPS13D-204ENST00000469054 RPL30P62888 115 aaKnown RBP9.48□□□□□ -0.89
VPS13D-204ENST00000469054 CBX3Q13185 183 aa9.48□□□□□ -0.89
VPS13D-204ENST00000469054 MEF2DQ14814 521 aa9.48□□□□□ -0.89
VPS13D-204ENST00000469054 ARSJQ5FYB0 599 aaPredicted RBP9.48□□□□□ -0.89
VPS13D-204ENST00000469054 KCTD9Q7L273 389 aa9.48□□□□□ -0.89
VPS13D-204ENST00000469054 Q8N402 240 aa9.48□□□□□ -0.89
VPS13D-204ENST00000469054 FAM71E2Q8N5Q1 922 aa9.48□□□□□ -0.89
VPS13D-204ENST00000469054 C3orf56Q8N813 242 aa9.48□□□□□ -0.89
VPS13D-204ENST00000469054 BVESQ8NE79 360 aa9.48□□□□□ -0.89
VPS13D-204ENST00000469054 OR4D10Q8NGI6 311 aa9.48□□□□□ -0.89
VPS13D-204ENST00000469054 TSNAXQ99598 290 aaKnown RBP9.48□□□□□ -0.89
VPS13D-204ENST00000469054 FXYD6Q9H0Q3 95 aa9.48□□□□□ -0.89
VPS13D-204ENST00000469054 KIAA1456Q9P272 454 aa9.48□□□□□ -0.89
VPS13D-204ENST00000469054 PRELID3BQ9Y3B1 194 aa9.48□□□□□ -0.89
VPS13D-204ENST00000469054 COL6A5A8TX70 2615 aa9.47□□□□□ -0.89
VPS13D-204ENST00000469054 ANKRD20A5PA0PJZ0 165 aa9.47□□□□□ -0.89
VPS13D-204ENST00000469054 RRHO14718 337 aa9.47□□□□□ -0.89
VPS13D-204ENST00000469054 TNFSF12O43508 249 aa9.47□□□□□ -0.89
VPS13D-204ENST00000469054 FCGR3BO75015 233 aa9.47□□□□□ -0.89
VPS13D-204ENST00000469054 PEX14O75381 377 aa9.47□□□□□ -0.89
Retrieved 100 of 20,778 RNA–protein pairs in 38.5 ms