RNA–Protein interactions for RNA: ENST00000466591.1

COL7A1-206, Transcript of collagen type VII alpha 1 chain, humanhuman

TSL 2

Gene COL7A1, Length 778 nt, Biotype retained intron, Subcellular localisation Endoplasmic reticulum .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
COL7A1-206ENST00000466591 ZNF562Q6V9R5 426 aa13.59□□□□□ -0.23
COL7A1-206ENST00000466591 ZNF367Q7RTV3 350 aa13.59□□□□□ -0.23
COL7A1-206ENST00000466591 NRG4Q8WWG1 115 aa13.59□□□□□ -0.23
COL7A1-206ENST00000466591 PTX4Q96A99 478 aa13.59□□□□□ -0.23
COL7A1-206ENST00000466591 PHB2Q99623 299 aa13.59□□□□□ -0.23
COL7A1-206ENST00000466591 RSRP1Q9BUV0 290 aa13.59□□□□□ -0.23
COL7A1-206ENST00000466591 ELOVL1Q9BW60 279 aa13.59□□□□□ -0.23
COL7A1-206ENST00000466591 TOLLIPQ9H0E2 274 aa13.59□□□□□ -0.23
COL7A1-206ENST00000466591 OR2D2Q9H210 308 aa13.59□□□□□ -0.23
COL7A1-206ENST00000466591 IGHV4OR15-8A0A075B7B6 117 aa13.58□□□□□ -0.24
COL7A1-206ENST00000466591 A0A087WW49 117 aa13.58□□□□□ -0.24
COL7A1-206ENST00000466591 TMEM272A0A1B0GTI8 110 aa13.58□□□□□ -0.24
COL7A1-206ENST00000466591 HSPB1P04792 205 aaKnown RBP13.58□□□□□ -0.24
COL7A1-206ENST00000466591 OR8U9P0C7N5 309 aa13.58□□□□□ -0.24
COL7A1-206ENST00000466591 CRHBPP24387 322 aa13.58□□□□□ -0.24
COL7A1-206ENST00000466591 TMEM50BP56557 158 aa13.58□□□□□ -0.24
COL7A1-206ENST00000466591 CD200R1LQ6Q8B3 271 aa13.58□□□□□ -0.24
COL7A1-206ENST00000466591 ZNF436-AS1Q8NC38 126 aaPredicted RBP13.58□□□□□ -0.24
COL7A1-206ENST00000466591 DLX4Q92988 240 aaPredicted RBP13.58□□□□□ -0.24
COL7A1-206ENST00000466591 HARBI1Q96MB7 349 aa13.58□□□□□ -0.24
COL7A1-206ENST00000466591 GFI1Q99684 422 aa13.58□□□□□ -0.24
COL7A1-206ENST00000466591 AGMATQ9BSE5 352 aa13.58□□□□□ -0.24
COL7A1-206ENST00000466591 GAB2Q9UQC2 676 aa13.58□□□□□ -0.24
COL7A1-206ENST00000466591 LSM4Q9Y4Z0 139 aaKnown RBP13.58□□□□□ -0.24
COL7A1-206ENST00000466591 SHOXO15266 292 aa13.57□□□□□ -0.24
COL7A1-206ENST00000466591 SOX15O60248 233 aa13.57□□□□□ -0.24
COL7A1-206ENST00000466591 IGKV1-16P04430 117 aa13.57□□□□□ -0.24
COL7A1-206ENST00000466591 GNB3P16520 340 aa13.57□□□□□ -0.24
COL7A1-206ENST00000466591 KIAA0141Q14154 515 aaPredicted RBP13.57□□□□□ -0.24
COL7A1-206ENST00000466591 PLAC9Q5JTB6 97 aa13.57□□□□□ -0.24
COL7A1-206ENST00000466591 ASPHD1Q5U4P2 390 aa13.57□□□□□ -0.24
COL7A1-206ENST00000466591 ZNF383Q8NA42 475 aa13.57□□□□□ -0.24
COL7A1-206ENST00000466591 OR10R2Q8NGX6 335 aa13.57□□□□□ -0.24
COL7A1-206ENST00000466591 CENPOQ9BU64 300 aa13.57□□□□□ -0.24
COL7A1-206ENST00000466591 NUBP2Q9Y5Y2 271 aa13.57□□□□□ -0.24
COL7A1-206ENST00000466591 ARPC1BO15143 372 aaKnown RBP13.56□□□□□ -0.24
COL7A1-206ENST00000466591 MPPED1O15442 326 aa13.56□□□□□ -0.24
COL7A1-206ENST00000466591 FCGR3AP08637 254 aa13.56□□□□□ -0.24
COL7A1-206ENST00000466591 CD37P11049 281 aa13.56□□□□□ -0.24
COL7A1-206ENST00000466591 LGALS7P47929 136 aa13.56□□□□□ -0.24
COL7A1-206ENST00000466591 CRIP2P52943 208 aaPredicted RBP13.56□□□□□ -0.24
COL7A1-206ENST00000466591 TAGLNQ01995 201 aaKnown RBP13.56□□□□□ -0.24
COL7A1-206ENST00000466591 TBCEQ15813 527 aaPredicted RBP13.56□□□□□ -0.24
COL7A1-206ENST00000466591 ANKRD13BQ86YJ7 626 aa13.56□□□□□ -0.24
COL7A1-206ENST00000466591 OR5T1Q8NG75 326 aa13.56□□□□□ -0.24
COL7A1-206ENST00000466591 MAFIPQ8WZ33 124 aa13.56□□□□□ -0.24
COL7A1-206ENST00000466591 ATG5Q9H1Y0 275 aa13.56□□□□□ -0.24
COL7A1-206ENST00000466591 A0A0G2JLM5 398 aa13.55□□□□□ -0.24
COL7A1-206ENST00000466591 FOXI3A8MTJ6 420 aaPredicted RBP13.55□□□□□ -0.24
COL7A1-206ENST00000466591 RAB3BP20337 219 aa13.55□□□□□ -0.24
COL7A1-206ENST00000466591 OR10A3P58181 314 aa13.55□□□□□ -0.24
COL7A1-206ENST00000466591 LINC00205P59089 165 aa13.55□□□□□ -0.24
COL7A1-206ENST00000466591 IGSF11Q5DX21 431 aa13.55□□□□□ -0.24
COL7A1-206ENST00000466591 POC5Q8NA72 575 aa13.55□□□□□ -0.24
COL7A1-206ENST00000466591 RANGRFQ9HD47 186 aaPredicted RBP13.55□□□□□ -0.24
COL7A1-206ENST00000466591 COA4Q9NYJ1 87 aa13.55□□□□□ -0.24
COL7A1-206ENST00000466591 TRAV1-2A0A0B4J238 106 aa13.54□□□□□ -0.24
COL7A1-206ENST00000466591 IGKV1-6A0A0C4DH72 117 aa13.54□□□□□ -0.24
COL7A1-206ENST00000466591 IFITM5A6NNB3 132 aa13.54□□□□□ -0.24
COL7A1-206ENST00000466591 GSTT2P0CG29 244 aa13.54□□□□□ -0.24
COL7A1-206ENST00000466591 GSTT2BP0CG30 244 aa13.54□□□□□ -0.24
COL7A1-206ENST00000466591 RRASP10301 218 aa13.54□□□□□ -0.24
COL7A1-206ENST00000466591 GP9P14770 177 aa13.54□□□□□ -0.24
COL7A1-206ENST00000466591 SPNP16150 400 aa13.54□□□□□ -0.24
COL7A1-206ENST00000466591 ZP3P21754 424 aa13.54□□□□□ -0.24
COL7A1-206ENST00000466591 ARL6IP1Q15041 203 aa13.54□□□□□ -0.24
COL7A1-206ENST00000466591 SRSF7Q16629 238 aaKnown RBP eCLIP13.54□□□□□ -0.24
COL7A1-206ENST00000466591 VMA21Q3ZAQ7 101 aa13.54□□□□□ -0.24
COL7A1-206ENST00000466591 C19orf54Q5BKX5 351 aa13.54□□□□□ -0.24
COL7A1-206ENST00000466591 BVESQ8NE79 360 aa13.54□□□□□ -0.24
COL7A1-206ENST00000466591 DCUN1D5Q9BTE7 237 aa13.54□□□□□ -0.24
COL7A1-206ENST00000466591 TPSG1Q9NRR2 321 aa13.54□□□□□ -0.24
COL7A1-206ENST00000466591 SDHAF2Q9NX18 166 aa13.54□□□□□ -0.24
COL7A1-206ENST00000466591 ZNF230Q9UIE0 474 aaPredicted RBP13.54□□□□□ -0.24
COL7A1-206ENST00000466591 ANKRD34BA5PLL1 514 aa13.53□□□□□ -0.24
COL7A1-206ENST00000466591 ACTL6BO94805 426 aa13.53□□□□□ -0.24
COL7A1-206ENST00000466591 EGR2P11161 476 aaPredicted RBP13.53□□□□□ -0.24
COL7A1-206ENST00000466591 HIST1H1DP16402 221 aaKnown RBP13.53□□□□□ -0.24
COL7A1-206ENST00000466591 RAB6AP20340 208 aa13.53□□□□□ -0.24
COL7A1-206ENST00000466591 MOGAT2Q3SYC2 334 aa13.53□□□□□ -0.24
COL7A1-206ENST00000466591 ACSM6Q6P461 480 aa13.53□□□□□ -0.24
COL7A1-206ENST00000466591 ACOT12Q8WYK0 555 aa13.53□□□□□ -0.24
COL7A1-206ENST00000466591 ADTRPQ96IZ2 230 aa13.53□□□□□ -0.24
COL7A1-206ENST00000466591 TMEM68Q96MH6 324 aa13.53□□□□□ -0.24
COL7A1-206ENST00000466591 ZMAT4Q9H898 229 aa13.53□□□□□ -0.24
COL7A1-206ENST00000466591 NDUFB11Q9NX14 153 aa13.53□□□□□ -0.24
COL7A1-206ENST00000466591 STUB1Q9UNE7 303 aa13.53□□□□□ -0.24
COL7A1-206ENST00000466591 TRBV6-7A0A0A0MS04 114 aa13.52□□□□□ -0.25
COL7A1-206ENST00000466591 H3BUA1 57 aa13.52□□□□□ -0.25
COL7A1-206ENST00000466591 J3QRK9 145 aa13.52□□□□□ -0.25
COL7A1-206ENST00000466591 CREBL2O60519 120 aaPredicted RBP13.52□□□□□ -0.25
COL7A1-206ENST00000466591 PSMB9P28065 219 aa13.52□□□□□ -0.25
COL7A1-206ENST00000466591 PLA2G7Q13093 441 aa13.52□□□□□ -0.25
COL7A1-206ENST00000466591 TNXAQ16473 311 aa13.52□□□□□ -0.25
COL7A1-206ENST00000466591 TATDN3Q17R31 274 aa13.52□□□□□ -0.25
COL7A1-206ENST00000466591 C22orf42Q6IC83 251 aa13.52□□□□□ -0.25
COL7A1-206ENST00000466591 OVCH2Q7RTZ1 564 aa13.52□□□□□ -0.25
COL7A1-206ENST00000466591 CABLES2Q9BTV7 478 aa13.52□□□□□ -0.25
COL7A1-206ENST00000466591 TRDV1A0A1B0GX56 115 aa13.51□□□□□ -0.25
COL7A1-206ENST00000466591 SMIM30A4D0T7 59 aa13.51□□□□□ -0.25
Retrieved 100 of 20,778 RNA–protein pairs in 34 ms