RNA–Protein interactions for RNA: ENST00000460162.1

PTPN4-207, Transcript of protein tyrosine phosphatase, non-receptor type 4, humanhuman

TSL 4

Gene PTPN4, Length 623 nt, Biotype processed transcript, Subcellular localisation Cytoplasm, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
PTPN4-207ENST00000460162 SLURP1P55000 103 aa17.6■□□□□ 0.41
PTPN4-207ENST00000460162 HES5Q5TA89 166 aa17.6■□□□□ 0.41
PTPN4-207ENST00000460162 LFNGQ8NES3 379 aa17.6■□□□□ 0.41
PTPN4-207ENST00000460162 DLX4Q92988 240 aaPredicted RBP17.6■□□□□ 0.41
PTPN4-207ENST00000460162 RAB3CQ96E17 227 aa17.6■□□□□ 0.41
PTPN4-207ENST00000460162 CLCC1Q96S66 551 aa17.6■□□□□ 0.41
PTPN4-207ENST00000460162 IGHV4OR15-8A0A075B7B6 117 aa17.59■□□□□ 0.41
PTPN4-207ENST00000460162 A0A087WW49 117 aa17.59■□□□□ 0.41
PTPN4-207ENST00000460162 M0R1X1 148 aa17.59■□□□□ 0.41
PTPN4-207ENST00000460162 PDCD5O14737 125 aa17.59■□□□□ 0.41
PTPN4-207ENST00000460162 SAP30O75446 220 aa17.59■□□□□ 0.41
PTPN4-207ENST00000460162 FCGR3AP08637 254 aa17.59■□□□□ 0.41
PTPN4-207ENST00000460162 TPPP2P59282 170 aa17.59■□□□□ 0.41
PTPN4-207ENST00000460162 RPS16P62249 146 aaKnown RBP17.59■□□□□ 0.41
PTPN4-207ENST00000460162 FLYWCH2Q96CP2 140 aaKnown RBP17.59■□□□□ 0.41
PTPN4-207ENST00000460162 KCNK7Q9Y2U2 307 aa17.59■□□□□ 0.41
PTPN4-207ENST00000460162 SMAD5-AS1Q9Y6J3 95 aa17.59■□□□□ 0.41
PTPN4-207ENST00000460162 TRAV1-2A0A0B4J238 106 aa17.58■□□□□ 0.4
PTPN4-207ENST00000460162 SLC25A17O43808 307 aa17.58■□□□□ 0.4
PTPN4-207ENST00000460162 GADD45AP24522 165 aa17.58■□□□□ 0.4
PTPN4-207ENST00000460162 PLA2G7Q13093 441 aa17.58■□□□□ 0.4
PTPN4-207ENST00000460162 SSX1Q16384 188 aa17.58■□□□□ 0.4
PTPN4-207ENST00000460162 IZUMO2Q6UXV1 221 aa17.58■□□□□ 0.4
PTPN4-207ENST00000460162 OR2D2Q9H210 308 aa17.58■□□□□ 0.4
PTPN4-207ENST00000460162 SLC35D1Q9NTN3 355 aa17.58■□□□□ 0.4
PTPN4-207ENST00000460162 NDUFB11Q9NX14 153 aa17.58■□□□□ 0.4
PTPN4-207ENST00000460162 H3BUA1 57 aa17.57■□□□□ 0.4
PTPN4-207ENST00000460162 MFNGO00587 321 aa17.57■□□□□ 0.4
PTPN4-207ENST00000460162 ARPC1BO15143 372 aaKnown RBP17.57■□□□□ 0.4
PTPN4-207ENST00000460162 IGHV3-11P01762 117 aa17.57■□□□□ 0.4
PTPN4-207ENST00000460162 OR8U9P0C7N5 309 aa17.57■□□□□ 0.4
PTPN4-207ENST00000460162 RAB6AP20340 208 aa17.57■□□□□ 0.4
PTPN4-207ENST00000460162 MYL9P24844 172 aa17.57■□□□□ 0.4
PTPN4-207ENST00000460162 LINC00205P59089 165 aa17.57■□□□□ 0.4
PTPN4-207ENST00000460162 MOGAT2Q3SYC2 334 aa17.57■□□□□ 0.4
PTPN4-207ENST00000460162 ACSM6Q6P461 480 aa17.57■□□□□ 0.4
PTPN4-207ENST00000460162 OR10R2Q8NGX6 335 aa17.57■□□□□ 0.4
PTPN4-207ENST00000460162 OR10J5Q8NHC4 309 aa17.57■□□□□ 0.4
PTPN4-207ENST00000460162 GRPEL2Q8TAA5 225 aa17.57■□□□□ 0.4
PTPN4-207ENST00000460162 TRBV6-7A0A0A0MS04 114 aa17.56■□□□□ 0.4
PTPN4-207ENST00000460162 IFITM5A6NNB3 132 aa17.56■□□□□ 0.4
PTPN4-207ENST00000460162 BET1O15155 118 aa17.56■□□□□ 0.4
PTPN4-207ENST00000460162 HSPB1P04792 205 aaKnown RBP17.56■□□□□ 0.4
PTPN4-207ENST00000460162 HIST1H1DP16402 221 aaKnown RBP17.56■□□□□ 0.4
PTPN4-207ENST00000460162 OR10A3P58181 314 aa17.56■□□□□ 0.4
PTPN4-207ENST00000460162 PITPNAQ00169 270 aa17.56■□□□□ 0.4
PTPN4-207ENST00000460162 FXYD3Q14802 87 aa17.56■□□□□ 0.4
PTPN4-207ENST00000460162 IGSF11Q5DX21 431 aa17.56■□□□□ 0.4
PTPN4-207ENST00000460162 OR6Q1Q8NGQ2 317 aa17.56■□□□□ 0.4
PTPN4-207ENST00000460162 RHOVQ96L33 236 aa17.56■□□□□ 0.4
PTPN4-207ENST00000460162 CNBD2Q96M20 576 aa17.56■□□□□ 0.4
PTPN4-207ENST00000460162 MS4A10Q96PG2 267 aa17.56■□□□□ 0.4
PTPN4-207ENST00000460162 SHISA3A0PJX4 238 aa17.55■□□□□ 0.4
PTPN4-207ENST00000460162 RAB27BO00194 218 aa17.55■□□□□ 0.4
PTPN4-207ENST00000460162 TRGV3P03979 118 aa17.55■□□□□ 0.4
PTPN4-207ENST00000460162 LGALS7P47929 136 aa17.55■□□□□ 0.4
PTPN4-207ENST00000460162 TAGLNQ01995 201 aaKnown RBP17.55■□□□□ 0.4
PTPN4-207ENST00000460162 CBX3Q13185 183 aa17.55■□□□□ 0.4
PTPN4-207ENST00000460162 POC5Q8NA72 575 aa17.55■□□□□ 0.4
PTPN4-207ENST00000460162 HARBI1Q96MB7 349 aa17.55■□□□□ 0.4
PTPN4-207ENST00000460162 SDHAF2Q9NX18 166 aa17.55■□□□□ 0.4
PTPN4-207ENST00000460162 IGLV2-23P01705 113 aa17.54■□□□□ 0.4
PTPN4-207ENST00000460162 GSTT2P0CG29 244 aa17.54■□□□□ 0.4
PTPN4-207ENST00000460162 GSTT2BP0CG30 244 aa17.54■□□□□ 0.4
PTPN4-207ENST00000460162 SNRPBP14678 240 aaKnown RBP17.54■□□□□ 0.4
PTPN4-207ENST00000460162 GALP22466 123 aa17.54■□□□□ 0.4
PTPN4-207ENST00000460162 SSBP2P81877 361 aaPredicted RBP17.54■□□□□ 0.4
PTPN4-207ENST00000460162 ASCL2Q99929 193 aa17.54■□□□□ 0.4
PTPN4-207ENST00000460162 CENPOQ9BU64 300 aa17.54■□□□□ 0.4
PTPN4-207ENST00000460162 RYR3Q15413 4870 aa17.53■□□□□ 0.4
PTPN4-207ENST00000460162 TRDV1A0A1B0GX56 115 aa17.53■□□□□ 0.4
PTPN4-207ENST00000460162 METTL21EPA6NDL7 271 aa17.53■□□□□ 0.4
PTPN4-207ENST00000460162 GP9P14770 177 aa17.53■□□□□ 0.4
PTPN4-207ENST00000460162 SPNP16150 400 aa17.53■□□□□ 0.4
PTPN4-207ENST00000460162 GNB3P16520 340 aa17.53■□□□□ 0.4
PTPN4-207ENST00000460162 RAB3BP20337 219 aa17.53■□□□□ 0.4
PTPN4-207ENST00000460162 SRSF7Q16629 238 aaKnown RBP eCLIP17.53■□□□□ 0.42e-8■■■■■ 27
PTPN4-207ENST00000460162 RTL8BQ17RB0 113 aa17.53■□□□□ 0.4
PTPN4-207ENST00000460162 Q6ZS49 121 aa17.53■□□□□ 0.4
PTPN4-207ENST00000460162 TMEM68Q96MH6 324 aa17.53■□□□□ 0.4
PTPN4-207ENST00000460162 A0A075B6Q4 140 aa17.52■□□□□ 0.4
PTPN4-207ENST00000460162 CNIH1O95406 144 aa17.52■□□□□ 0.4
PTPN4-207ENST00000460162 CRYGBP07316 175 aa17.52■□□□□ 0.4
PTPN4-207ENST00000460162 GABARAPL2P60520 117 aa17.52■□□□□ 0.4
PTPN4-207ENST00000460162 ARL6IP1Q15041 203 aa17.52■□□□□ 0.4
PTPN4-207ENST00000460162 TMEM177Q53S58 311 aa17.52■□□□□ 0.4
PTPN4-207ENST00000460162 MAFIPQ8WZ33 124 aa17.52■□□□□ 0.4
PTPN4-207ENST00000460162 C5orf30Q96GV9 206 aa17.52■□□□□ 0.4
PTPN4-207ENST00000460162 OR4C12Q96R67 309 aa17.52■□□□□ 0.4
PTPN4-207ENST00000460162 GINS4Q9BRT9 223 aa17.52■□□□□ 0.4
PTPN4-207ENST00000460162 ZNF355PQ9NSJ1 428 aa17.52■□□□□ 0.4
PTPN4-207ENST00000460162 A0A0G2JLM5 398 aa17.51■□□□□ 0.39
PTPN4-207ENST00000460162 BRI3O95415 125 aa17.51■□□□□ 0.39
PTPN4-207ENST00000460162 RRASP10301 218 aa17.51■□□□□ 0.39
PTPN4-207ENST00000460162 ARFRP1Q13795 201 aa17.51■□□□□ 0.39
PTPN4-207ENST00000460162 ADTRPQ96IZ2 230 aa17.51■□□□□ 0.39
PTPN4-207ENST00000460162 RANGRFQ9HD47 186 aaPredicted RBP17.51■□□□□ 0.39
PTPN4-207ENST00000460162 ZNF230Q9UIE0 474 aaPredicted RBP17.51■□□□□ 0.39
PTPN4-207ENST00000460162 RAB26Q9ULW5 256 aa17.51■□□□□ 0.39
PTPN4-207ENST00000460162 RBM7Q9Y580 266 aaKnown RBP17.51■□□□□ 0.39
Retrieved 100 of 20,778 RNA–protein pairs in 71.9 ms