RNA–Protein interactions for RNA: ENST00000456560.6

SEMA3B-209, Transcript of semaphorin 3B, humanhuman

TSL 1 (best) BASIC

Gene SEMA3B, Length 2,221 nt, Biotype protein coding, Subcellular localisation Cytoplasm, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SEMA3B-209ENST00000456560 FOXC1Q12948 553 aa15.35■□□□□ 0.05
SEMA3B-209ENST00000456560 CATR1Q13166 79 aa15.35■□□□□ 0.05
SEMA3B-209ENST00000456560 SPANXN5Q5MJ07 72 aa15.35■□□□□ 0.05
SEMA3B-209ENST00000456560 IGFL3Q6UXB1 125 aa15.35■□□□□ 0.05
SEMA3B-209ENST00000456560 TPRX1Q8N7U7 411 aa15.35■□□□□ 0.05
SEMA3B-209ENST00000456560 MBD3L1Q8WWY6 194 aa15.35■□□□□ 0.05
SEMA3B-209ENST00000456560 OR4C12Q96R67 309 aa15.35■□□□□ 0.05
SEMA3B-209ENST00000456560 VSIRQ9H7M9 311 aa15.35■□□□□ 0.05
SEMA3B-209ENST00000456560 SIRT7Q9NRC8 400 aa15.35■□□□□ 0.05
SEMA3B-209ENST00000456560 SPTBN4Q9H254 2564 aa15.34■□□□□ 0.05
SEMA3B-209ENST00000456560 C15orf65H3BRN8 121 aa15.34■□□□□ 0.05
SEMA3B-209ENST00000456560 CYB5BO43169 146 aa15.34■□□□□ 0.05
SEMA3B-209ENST00000456560 KRASP01116 189 aa15.34■□□□□ 0.05
SEMA3B-209ENST00000456560 ZNF816Q0VGE8 651 aaPredicted RBP15.34■□□□□ 0.05
SEMA3B-209ENST00000456560 SPNS3Q6ZMD2 512 aa15.34■□□□□ 0.05
SEMA3B-209ENST00000456560 TCTEX1D1Q8N7M0 179 aa15.34■□□□□ 0.05
SEMA3B-209ENST00000456560 WDR61Q9GZS3 305 aaKnown RBP15.34■□□□□ 0.05
SEMA3B-209ENST00000456560 LOC102723971A0A1B0GUV8 181 aa15.33■□□□□ 0.05
SEMA3B-209ENST00000456560 CXorf65A6NEN9 183 aa15.33■□□□□ 0.05
SEMA3B-209ENST00000456560 HIST1H2BKO60814 126 aa15.33■□□□□ 0.05
SEMA3B-209ENST00000456560 ZNF737O75373 536 aa15.33■□□□□ 0.05
SEMA3B-209ENST00000456560 S1PR2O95136 353 aa15.33■□□□□ 0.05
SEMA3B-209ENST00000456560 HIST1H2BJP06899 126 aa15.33■□□□□ 0.05
SEMA3B-209ENST00000456560 EGR1P18146 543 aa15.33■□□□□ 0.05
SEMA3B-209ENST00000456560 HIST1H2BOP23527 126 aa15.33■□□□□ 0.05
SEMA3B-209ENST00000456560 PRDX2P32119 198 aa15.33■□□□□ 0.05
SEMA3B-209ENST00000456560 HIST1H2BBP33778 126 aa15.33■□□□□ 0.05
SEMA3B-209ENST00000456560 HIST1H2BDP58876 126 aa15.33■□□□□ 0.05
SEMA3B-209ENST00000456560 HIST1H2BCP62807 126 aa15.33■□□□□ 0.05
SEMA3B-209ENST00000456560 HIST2H2BEQ16778 126 aa15.33■□□□□ 0.05
SEMA3B-209ENST00000456560 KHDC3LQ587J8 217 aa15.33■□□□□ 0.05
SEMA3B-209ENST00000456560 HIST2H2BFQ5QNW6 126 aaPredicted RBP15.33■□□□□ 0.05
SEMA3B-209ENST00000456560 CDPF1Q6NVV7 123 aa15.33■□□□□ 0.05
SEMA3B-209ENST00000456560 HIST1H2BHQ93079 126 aa15.33■□□□□ 0.05
SEMA3B-209ENST00000456560 HIST1H2BNQ99877 126 aa15.33■□□□□ 0.05
SEMA3B-209ENST00000456560 HIST1H2BMQ99879 126 aa15.33■□□□□ 0.05
SEMA3B-209ENST00000456560 LRRC30A6NM36 301 aa15.33■□□□□ 0.04
SEMA3B-209ENST00000456560 SEC14L6B5MCN3 397 aa15.33■□□□□ 0.04
SEMA3B-209ENST00000456560 NDUFS6O75380 124 aaKnown RBP15.33■□□□□ 0.04
SEMA3B-209ENST00000456560 SERF2P84101 59 aa15.33■□□□□ 0.04
SEMA3B-209ENST00000456560 HTD2P86397 168 aa15.33■□□□□ 0.04
SEMA3B-209ENST00000456560 ZNF726P1Q15940 193 aa15.33■□□□□ 0.04
SEMA3B-209ENST00000456560 BTNL3Q6UXE8 466 aa15.33■□□□□ 0.04
SEMA3B-209ENST00000456560 LILRB2Q8N423 598 aa15.33■□□□□ 0.04
SEMA3B-209ENST00000456560 OR2Z1Q8NG97 314 aa15.33■□□□□ 0.04
SEMA3B-209ENST00000456560 OR10D4PQ8NGN7 298 aa15.33■□□□□ 0.04
SEMA3B-209ENST00000456560 CTNNBIP1Q9NSA3 81 aaPredicted RBP15.33■□□□□ 0.04
SEMA3B-209ENST00000456560 CHD3Q12873 2000 aaKnown RBP15.33■□□□□ 0.04
SEMA3B-209ENST00000456560 ODAMA1E959 279 aa15.32■□□□□ 0.04
SEMA3B-209ENST00000456560 SRRM5B3KS81 715 aa15.32■□□□□ 0.04
SEMA3B-209ENST00000456560 CLDN1O95832 211 aa15.32■□□□□ 0.04
SEMA3B-209ENST00000456560 SLC38A11Q08AI6 406 aa15.32■□□□□ 0.04
SEMA3B-209ENST00000456560 TRAT1Q6PIZ9 186 aa15.32■□□□□ 0.04
SEMA3B-209ENST00000456560 ZNF66Q6ZN08 573 aa15.32■□□□□ 0.04
SEMA3B-209ENST00000456560 SLC35E3Q7Z769 313 aa15.32■□□□□ 0.04
SEMA3B-209ENST00000456560 LRP11Q86VZ4 500 aa15.32■□□□□ 0.04
SEMA3B-209ENST00000456560 OR10G4Q8NGN3 311 aa15.32■□□□□ 0.04
SEMA3B-209ENST00000456560 RFESDQ8TAC1 157 aa15.32■□□□□ 0.04
SEMA3B-209ENST00000456560 AGMATQ9BSE5 352 aa15.32■□□□□ 0.04
SEMA3B-209ENST00000456560 DCTN5Q9BTE1 182 aa15.32■□□□□ 0.04
SEMA3B-209ENST00000456560 IGHV3-43A0A0B4J1X8 118 aa15.32■□□□□ 0.04
SEMA3B-209ENST00000456560 RAB29O14966 203 aa15.32■□□□□ 0.04
SEMA3B-209ENST00000456560 ATXN7O15265 892 aaPredicted RBP15.32■□□□□ 0.04
SEMA3B-209ENST00000456560 CLDN14O95500 239 aa15.32■□□□□ 0.04
SEMA3B-209ENST00000456560 IGHV3-43DP0DP04 118 aa15.32■□□□□ 0.04
SEMA3B-209ENST00000456560 CFHR2P36980 270 aa15.32■□□□□ 0.04
SEMA3B-209ENST00000456560 NKX6-1P78426 367 aaPredicted RBP15.32■□□□□ 0.04
SEMA3B-209ENST00000456560 DEFA6Q01524 100 aa15.32■□□□□ 0.04
SEMA3B-209ENST00000456560 ZNF474Q6S9Z5 364 aaPredicted RBP15.32■□□□□ 0.04
SEMA3B-209ENST00000456560 IGKV1D-17A0A075B6S4 117 aa15.31■□□□□ 0.04
SEMA3B-209ENST00000456560 LINC00473A8K010 186 aa15.31■□□□□ 0.04
SEMA3B-209ENST00000456560 TRGC2P03986 189 aa15.31■□□□□ 0.04
SEMA3B-209ENST00000456560 ZNF83P51522 516 aa15.31■□□□□ 0.04
SEMA3B-209ENST00000456560 FAM90A1Q86YD7 464 aa15.31■□□□□ 0.04
SEMA3B-209ENST00000456560 FAM215AQ9Y5M1 114 aa15.31■□□□□ 0.04
SEMA3B-209ENST00000456560 PPP1R2P9O14990 202 aa15.31■□□□□ 0.04
SEMA3B-209ENST00000456560 SPINT2O43291 252 aa15.31■□□□□ 0.04
SEMA3B-209ENST00000456560 ADH4P08319 380 aa15.31■□□□□ 0.04
SEMA3B-209ENST00000456560 PDZD11Q5EBL8 140 aa15.31■□□□□ 0.04
SEMA3B-209ENST00000456560 SSX7Q7RTT5 188 aa15.31■□□□□ 0.04
SEMA3B-209ENST00000456560 TAF15Q92804 592 aaKnown RBP eCLIP15.31■□□□□ 0.04
SEMA3B-209ENST00000456560 HSD17B10Q99714 261 aaKnown RBP15.31■□□□□ 0.04
SEMA3B-209ENST00000456560 PSG11Q9UQ72 335 aa15.31■□□□□ 0.04
SEMA3B-209ENST00000456560 TIMM9Q9Y5J7 89 aa15.31■□□□□ 0.04
SEMA3B-209ENST00000456560 CEP295Q9C0D2 2601 aa15.31■□□□□ 0.04
SEMA3B-209ENST00000456560 DEFB108AA8MXU0 73 aa15.3■□□□□ 0.04
SEMA3B-209ENST00000456560 ST8SIA5O15466 376 aa15.3■□□□□ 0.04
SEMA3B-209ENST00000456560 IGHV3-13P01766 116 aa15.3■□□□□ 0.04
SEMA3B-209ENST00000456560 TIMM23BQ5SRD1 257 aa15.3■□□□□ 0.04
SEMA3B-209ENST00000456560 GFI1BQ5VTD9 330 aa15.3■□□□□ 0.04
SEMA3B-209ENST00000456560 CENPVQ7Z7K6 275 aaPredicted RBP15.3■□□□□ 0.04
SEMA3B-209ENST00000456560 RCC1LQ96I51 464 aaKnown RBP15.3■□□□□ 0.04
SEMA3B-209ENST00000456560 MRPL37Q9BZE1 423 aaKnown RBP15.3■□□□□ 0.04
SEMA3B-209ENST00000456560 CISD1Q9NZ45 108 aaKnown RBP15.3■□□□□ 0.04
SEMA3B-209ENST00000456560 WASF3Q9UPY6 502 aa15.3■□□□□ 0.04
SEMA3B-209ENST00000456560 CACNA1DQ01668 2161 aa15.3■□□□□ 0.04
SEMA3B-209ENST00000456560 HEATR1Q9H583 2144 aaKnown RBP15.3■□□□□ 0.04
SEMA3B-209ENST00000456560 USF3Q68DE3 2245 aa15.3■□□□□ 0.04
SEMA3B-209ENST00000456560 PMS2P5A8MQ11 134 aa15.29■□□□□ 0.04
SEMA3B-209ENST00000456560 TMEM41BQ5BJD5 291 aa15.29■□□□□ 0.04
Retrieved 100 of 20,778 RNA–protein pairs in 56.1 ms