RNA–Protein interactions for RNA: ENST00000429895.5

PTPRF-206, Transcript of protein tyrosine phosphatase, receptor type F, humanhuman

TSL 1 (best)

Gene PTPRF, Length 6,312 nt, Biotype protein coding, Subcellular localisation Endoplasmic reticulum, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
PTPRF-206ENST00000429895 CTSBP07858 339 aa13.23□□□□□ -0.29
PTPRF-206ENST00000429895 LGALS3P17931 250 aaKnown RBP13.23□□□□□ -0.29
PTPRF-206ENST00000429895 SIGIRRQ6IA17 410 aa13.23□□□□□ -0.29
PTPRF-206ENST00000429895 A0A1W2PRX2 142 aa13.23□□□□□ -0.29
PTPRF-206ENST00000429895 PSG9Q00887 426 aa13.23□□□□□ -0.29
PTPRF-206ENST00000429895 DLL3Q9NYJ7 618 aa13.23□□□□□ -0.29
PTPRF-206ENST00000429895 S4R3C0 116 aa13.23□□□□□ -0.29
PTPRF-206ENST00000429895 IGHV3-49A0A0A0MS15 119 aa13.22□□□□□ -0.29
PTPRF-206ENST00000429895 PLA2G10O15496 165 aa13.22□□□□□ -0.29
PTPRF-206ENST00000429895 LCN2P80188 198 aa13.22□□□□□ -0.29
PTPRF-206ENST00000429895 KLRB1Q12918 225 aa13.22□□□□□ -0.29
PTPRF-206ENST00000429895 TMEM177Q53S58 311 aa13.22□□□□□ -0.29
PTPRF-206ENST00000429895 SLC25A47Q6Q0C1 308 aa13.22□□□□□ -0.29
PTPRF-206ENST00000429895 PSMB11A5LHX3 300 aa13.22□□□□□ -0.29
PTPRF-206ENST00000429895 ISG15P05161 165 aa13.22□□□□□ -0.29
PTPRF-206ENST00000429895 H1FOOQ8IZA3 346 aaPredicted RBP13.22□□□□□ -0.29
PTPRF-206ENST00000429895 MRAP2Q96G30 205 aa13.22□□□□□ -0.29
PTPRF-206ENST00000429895 TMEM74BQ9NUR3 256 aa13.22□□□□□ -0.29
PTPRF-206ENST00000429895 RSPO4Q2I0M5 234 aaPredicted RBP13.22□□□□□ -0.29
PTPRF-206ENST00000429895 EEF1AKMT3Q96AZ1 226 aa13.22□□□□□ -0.29
PTPRF-206ENST00000429895 VSIG10L2P0DP72 767 aa13.22□□□□□ -0.29
PTPRF-206ENST00000429895 GLIPR1P48060 266 aa13.22□□□□□ -0.29
PTPRF-206ENST00000429895 HIST1H1AQ02539 215 aaPredicted RBP13.22□□□□□ -0.29
PTPRF-206ENST00000429895 FGFRL1Q8N441 504 aa13.22□□□□□ -0.29
PTPRF-206ENST00000429895 LSM10Q969L4 123 aaKnown RBP13.22□□□□□ -0.29
PTPRF-206ENST00000429895 PILRAQ9UKJ1 303 aa13.22□□□□□ -0.29
PTPRF-206ENST00000429895 TRPM6Q9BX84 2022 aa13.22□□□□□ -0.29
PTPRF-206ENST00000429895 LRP5O75197 1615 aa13.22□□□□□ -0.29
PTPRF-206ENST00000429895 NDUFA2O43678 99 aa13.22□□□□□ -0.29
PTPRF-206ENST00000429895 SRSF12Q8WXF0 261 aaKnown RBP13.22□□□□□ -0.29
PTPRF-206ENST00000429895 GPR146Q96CH1 333 aa13.22□□□□□ -0.29
PTPRF-206ENST00000429895 TNFSF18Q9UNG2 199 aa13.22□□□□□ -0.29
PTPRF-206ENST00000429895 TRBV5-3A0A0A0MS03 114 aa13.21□□□□□ -0.29
PTPRF-206ENST00000429895 COX6CP09669 75 aa13.21□□□□□ -0.29
PTPRF-206ENST00000429895 C9JCJ5 164 aa13.21□□□□□ -0.29
PTPRF-206ENST00000429895 GDF9O60383 454 aa13.21□□□□□ -0.29
PTPRF-206ENST00000429895 ACSF3Q4G176 576 aaPredicted RBP13.21□□□□□ -0.29
PTPRF-206ENST00000429895 CLEC7AQ9BXN2 247 aa13.21□□□□□ -0.29
PTPRF-206ENST00000429895 TMEM222Q9H0R3 208 aa13.21□□□□□ -0.29
PTPRF-206ENST00000429895 SPAG17Q6Q759 2223 aa13.21□□□□□ -0.29
PTPRF-206ENST00000429895 USP54Q70EL1 1684 aa13.21□□□□□ -0.29
PTPRF-206ENST00000429895 ZG16O60844 167 aa13.21□□□□□ -0.29
PTPRF-206ENST00000429895 ZNF250P15622 560 aa13.21□□□□□ -0.29
PTPRF-206ENST00000429895 IFNL4K9M1U5 179 aa13.21□□□□□ -0.3
PTPRF-206ENST00000429895 NPFFO15130 113 aa13.21□□□□□ -0.3
PTPRF-206ENST00000429895 MBNL2Q5VZF2 373 aaKnown RBP13.21□□□□□ -0.3
PTPRF-206ENST00000429895 OR13C6PQ8NH95 151 aa13.21□□□□□ -0.3
PTPRF-206ENST00000429895 S1PR2O95136 353 aa13.21□□□□□ -0.3
PTPRF-206ENST00000429895 HSPB1P04792 205 aaKnown RBP13.21□□□□□ -0.3
PTPRF-206ENST00000429895 NGFRP08138 427 aa13.21□□□□□ -0.3
PTPRF-206ENST00000429895 NPPCP23582 126 aa13.21□□□□□ -0.3
PTPRF-206ENST00000429895 KCNK17Q96T54 332 aa13.21□□□□□ -0.3
PTPRF-206ENST00000429895 HSPB9Q9BQS6 159 aa13.21□□□□□ -0.3
PTPRF-206ENST00000429895 MAP1LC3AQ9H492 121 aa13.21□□□□□ -0.3
PTPRF-206ENST00000429895 LIPFP07098 398 aa13.2□□□□□ -0.3
PTPRF-206ENST00000429895 IRF3Q14653 427 aa13.2□□□□□ -0.3
PTPRF-206ENST00000429895 TMEM252Q8N6L7 170 aa13.2□□□□□ -0.3
PTPRF-206ENST00000429895 QTRT1Q9BXR0 403 aaKnown RBP13.2□□□□□ -0.3
PTPRF-206ENST00000429895 TRIP11Q15643 1979 aa13.2□□□□□ -0.3
PTPRF-206ENST00000429895 STARD6P59095 220 aa13.2□□□□□ -0.3
PTPRF-206ENST00000429895 SNRPD3P62318 126 aaKnown RBP13.2□□□□□ -0.3
PTPRF-206ENST00000429895 SELENOTP62341 195 aa13.2□□□□□ -0.3
PTPRF-206ENST00000429895 C1QL1O75973 258 aa13.2□□□□□ -0.3
PTPRF-206ENST00000429895 KLK2P20151 261 aa13.2□□□□□ -0.3
PTPRF-206ENST00000429895 RELQ04864 619 aaPredicted RBP13.2□□□□□ -0.3
PTPRF-206ENST00000429895 PCOLCEQ15113 449 aa13.2□□□□□ -0.3
PTPRF-206ENST00000429895 SELENOHQ8IZQ5 122 aaKnown RBP13.2□□□□□ -0.3
PTPRF-206ENST00000429895 HIST1H4GQ99525 98 aa13.2□□□□□ -0.3
PTPRF-206ENST00000429895 SFXN3Q9BWM7 321 aa13.2□□□□□ -0.3
PTPRF-206ENST00000429895 ARL14EPLP0DKL9 152 aa13.2□□□□□ -0.3
PTPRF-206ENST00000429895 UBE2V2Q15819 145 aa13.2□□□□□ -0.3
PTPRF-206ENST00000429895 ZNF79Q15937 498 aa13.2□□□□□ -0.3
PTPRF-206ENST00000429895 F11RQ9Y624 299 aaKnown RBP13.2□□□□□ -0.3
PTPRF-206ENST00000429895 ZNF638Q14966 1978 aaKnown RBP13.2□□□□□ -0.3
PTPRF-206ENST00000429895 FOXI3A8MTJ6 420 aaPredicted RBP13.2□□□□□ -0.3
PTPRF-206ENST00000429895 SYNGR3O43761 229 aa13.2□□□□□ -0.3
PTPRF-206ENST00000429895 HTN3P15516 51 aa13.2□□□□□ -0.3
PTPRF-206ENST00000429895 GALNT14Q96FL9 552 aa13.2□□□□□ -0.3
PTPRF-206ENST00000429895 RALYQ9UKM9 306 aaKnown RBP13.2□□□□□ -0.3
PTPRF-206ENST00000429895 TRGV3P03979 118 aa13.19□□□□□ -0.3
PTPRF-206ENST00000429895 SERF2P84101 59 aa13.19□□□□□ -0.3
PTPRF-206ENST00000429895 PET117Q6UWS5 81 aa13.19□□□□□ -0.3
PTPRF-206ENST00000429895 FDCSPQ8NFU4 85 aa13.19□□□□□ -0.3
PTPRF-206ENST00000429895 OR9G1Q8NH87 305 aa13.19□□□□□ -0.3
PTPRF-206ENST00000429895 TRAV30A0A087WSZ9 112 aa13.19□□□□□ -0.3
PTPRF-206ENST00000429895 NPIPB11E5RHQ5 1161 aa13.19□□□□□ -0.3
PTPRF-206ENST00000429895 MOSP00540 346 aa13.19□□□□□ -0.3
PTPRF-206ENST00000429895 MEGF10Q96KG7 1140 aa13.19□□□□□ -0.3
PTPRF-206ENST00000429895 DNAJC4Q9NNZ3 241 aa13.19□□□□□ -0.3
PTPRF-206ENST00000429895 LHFPL6Q9Y693 200 aa13.19□□□□□ -0.3
PTPRF-206ENST00000429895 TMEM238LA0A1B0GVL6 79 aa13.19□□□□□ -0.3
PTPRF-206ENST00000429895 C7orf71A4D174 169 aa13.19□□□□□ -0.3
PTPRF-206ENST00000429895 A6NJY4 79 aa13.19□□□□□ -0.3
PTPRF-206ENST00000429895 ITLN2Q8WWU7 325 aaPredicted RBP13.19□□□□□ -0.3
PTPRF-206ENST00000429895 OR51M1Q9H341 326 aa13.19□□□□□ -0.3
PTPRF-206ENST00000429895 NHSL1Q5SYE7 1610 aa13.19□□□□□ -0.3
PTPRF-206ENST00000429895 F5P12259 2224 aa13.19□□□□□ -0.3
PTPRF-206ENST00000429895 TSPOP30536 169 aa13.19□□□□□ -0.3
PTPRF-206ENST00000429895 A0A1W2PQM1 296 aa13.19□□□□□ -0.3
PTPRF-206ENST00000429895 RBFOX2O43251 390 aaKnown RBP eCLIP13.19□□□□□ -0.38e-7■□□□□ 9.9
Retrieved 100 of 20,778 RNA–protein pairs in 76.7 ms