RNA–Protein interactions for RNA: ENST00000423463.6

VPS13A-208, Transcript of vacuolar protein sorting 13 homolog A, humanhuman

TSL 2

Gene VPS13A, Length 2,702 nt, Biotype processed transcript, Subcellular localisation Cytoplasm, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
VPS13A-208ENST00000423463 HCP5Q6MZN7 132 aa1.98□□□□□ -2.09
VPS13A-208ENST00000423463 BRD3OSQ6XYD6 125 aa1.98□□□□□ -2.09
VPS13A-208ENST00000423463 GDPGP1Q6ZNW5 385 aa1.98□□□□□ -2.09
VPS13A-208ENST00000423463 OR2W3Q7Z3T1 314 aa1.98□□□□□ -2.09
VPS13A-208ENST00000423463 TRAPPC6BQ86SZ2 158 aa1.98□□□□□ -2.09
VPS13A-208ENST00000423463 RTN4RL2Q86UN3 420 aa1.98□□□□□ -2.09
VPS13A-208ENST00000423463 FAM219AQ8IW50 185 aa1.98□□□□□ -2.09
VPS13A-208ENST00000423463 MAPKAPK5-AS1Q8N8E1 139 aa1.98□□□□□ -2.09
VPS13A-208ENST00000423463 ZDHHC22Q8N966 263 aa1.98□□□□□ -2.09
VPS13A-208ENST00000423463 SUMF2Q8NBJ7 301 aa1.98□□□□□ -2.09
VPS13A-208ENST00000423463 OR11H4Q8NGC9 324 aa1.98□□□□□ -2.09
VPS13A-208ENST00000423463 OR10A7Q8NGE5 316 aa1.98□□□□□ -2.09
VPS13A-208ENST00000423463 OR4D6Q8NGJ1 314 aa1.98□□□□□ -2.09
VPS13A-208ENST00000423463 OR13D1Q8NGV5 346 aa1.98□□□□□ -2.09
VPS13A-208ENST00000423463 C22orf15Q8WYQ4 148 aa1.98□□□□□ -2.09
VPS13A-208ENST00000423463 COQ2Q96H96 371 aa1.98□□□□□ -2.09
VPS13A-208ENST00000423463 PRAC1Q96KF2 57 aa1.98□□□□□ -2.09
VPS13A-208ENST00000423463 ZNF714Q96N38 554 aa1.98□□□□□ -2.09
VPS13A-208ENST00000423463 URM1Q9BTM9 101 aaKnown RBP1.98□□□□□ -2.09
VPS13A-208ENST00000423463 SELENOIQ9C0D9 397 aa1.98□□□□□ -2.09
VPS13A-208ENST00000423463 CHST6Q9GZX3 395 aa1.98□□□□□ -2.09
VPS13A-208ENST00000423463 PPA2Q9H2U2 334 aa1.98□□□□□ -2.09
VPS13A-208ENST00000423463 LINC00574Q9H8X3 128 aa1.98□□□□□ -2.09
VPS13A-208ENST00000423463 RAB9BQ9NP90 201 aa1.98□□□□□ -2.09
VPS13A-208ENST00000423463 SIRT7Q9NRC8 400 aa1.98□□□□□ -2.09
VPS13A-208ENST00000423463 GSN-AS1Q9NRJ2 163 aa1.98□□□□□ -2.09
VPS13A-208ENST00000423463 STUB1Q9UNE7 303 aa1.98□□□□□ -2.09
VPS13A-208ENST00000423463 WDR83OSQ9Y284 106 aa1.98□□□□□ -2.09
VPS13A-208ENST00000423463 AK6Q9Y3D8 172 aaKnown RBP1.98□□□□□ -2.09
VPS13A-208ENST00000423463 ARHGAP32A7KAX9 2087 aa1.98□□□□□ -2.09
VPS13A-208ENST00000423463 SONP18583 2426 aaKnown RBP1.98□□□□□ -2.09
VPS13A-208ENST00000423463 NEBP20929 6669 aa1.98□□□□□ -2.09
VPS13A-208ENST00000423463 ABCA2Q9BZC7 2435 aa1.98□□□□□ -2.09
VPS13A-208ENST00000423463 WNK2Q9Y3S1 2297 aa1.98□□□□□ -2.09
VPS13A-208ENST00000423463 NBPF19A0A087WUL8 3843 aa1.98□□□□□ -2.09
VPS13A-208ENST00000423463 MEIKINA0A087WXM9 373 aa1.98□□□□□ -2.09
VPS13A-208ENST00000423463 KBTBD11-OT1A0A1B0GTJ5 212 aa1.98□□□□□ -2.09
VPS13A-208ENST00000423463 TMEM30CPA0ZSE6 113 aa1.98□□□□□ -2.09
VPS13A-208ENST00000423463 TRIM64CA6NLI5 447 aa1.98□□□□□ -2.09
VPS13A-208ENST00000423463 TMEM14DPA8MWL7 114 aa1.98□□□□□ -2.09
VPS13A-208ENST00000423463 GEMIN2O14893 280 aaKnown RBP1.98□□□□□ -2.09
VPS13A-208ENST00000423463 ORC5O43913 435 aa1.98□□□□□ -2.09
VPS13A-208ENST00000423463 PDCD6O75340 191 aa1.98□□□□□ -2.09
VPS13A-208ENST00000423463 CRTAPO75718 401 aaPredicted RBP1.98□□□□□ -2.09
VPS13A-208ENST00000423463 PAHP00439 452 aa1.98□□□□□ -2.09
VPS13A-208ENST00000423463 MT-ND4P03905 459 aa1.98□□□□□ -2.09
VPS13A-208ENST00000423463 FBP1P09467 338 aa1.98□□□□□ -2.09
VPS13A-208ENST00000423463 SPP1P10451 314 aa1.98□□□□□ -2.09
VPS13A-208ENST00000423463 RAB3BP20337 219 aa1.98□□□□□ -2.09
VPS13A-208ENST00000423463 CALRP27797 417 aaKnown RBP1.98□□□□□ -2.09
VPS13A-208ENST00000423463 CD34P28906 385 aa1.98□□□□□ -2.09
VPS13A-208ENST00000423463 PRRX1P54821 245 aa1.98□□□□□ -2.09
VPS13A-208ENST00000423463 RPS27AP62979 156 aaKnown RBP1.98□□□□□ -2.09
VPS13A-208ENST00000423463 UBA52P62987 128 aaKnown RBP1.98□□□□□ -2.09
VPS13A-208ENST00000423463 QRFPP83859 136 aa1.98□□□□□ -2.09
VPS13A-208ENST00000423463 TIMM50Q3ZCQ8 353 aa1.98□□□□□ -2.09
VPS13A-208ENST00000423463 FFAR4Q5NUL3 377 aa1.98□□□□□ -2.09
VPS13A-208ENST00000423463 RSBN1Q5VWQ0 802 aaPredicted RBP1.98□□□□□ -2.09
VPS13A-208ENST00000423463 RAB12Q6IQ22 244 aa1.98□□□□□ -2.09
VPS13A-208ENST00000423463 C16orf87Q6PH81 154 aa1.98□□□□□ -2.09
VPS13A-208ENST00000423463 HEPN1Q6WQI6 88 aa1.98□□□□□ -2.09
VPS13A-208ENST00000423463 TMEM182Q6ZP80 229 aaPredicted RBP1.98□□□□□ -2.09
VPS13A-208ENST00000423463 TCF23Q7RTU1 214 aa1.98□□□□□ -2.09
VPS13A-208ENST00000423463 NOTCH2NLQ7Z3S9 236 aa1.98□□□□□ -2.09
VPS13A-208ENST00000423463 MMD2Q8IY49 270 aa1.98□□□□□ -2.09
VPS13A-208ENST00000423463 PNKDQ8N490 385 aa1.98□□□□□ -2.09
VPS13A-208ENST00000423463 FAM89BQ8N5H3 189 aa1.98□□□□□ -2.09
VPS13A-208ENST00000423463 TPRX1Q8N7U7 411 aa1.98□□□□□ -2.09
VPS13A-208ENST00000423463 TMEM104Q8NE00 496 aa1.98□□□□□ -2.09
VPS13A-208ENST00000423463 OR11H6Q8NGC7 330 aa1.98□□□□□ -2.09
VPS13A-208ENST00000423463 OR52M1Q8NGK5 317 aa1.98□□□□□ -2.09
VPS13A-208ENST00000423463 PLPPR1Q8TBJ4 325 aa1.98□□□□□ -2.09
VPS13A-208ENST00000423463 NEK7Q8TDX7 302 aa1.98□□□□□ -2.09
VPS13A-208ENST00000423463 PHLDA1Q8WV24 401 aaPredicted RBP1.98□□□□□ -2.09
VPS13A-208ENST00000423463 CREB3L1Q96BA8 519 aa1.98□□□□□ -2.09
VPS13A-208ENST00000423463 FAM3DQ96BQ1 224 aa1.98□□□□□ -2.09
VPS13A-208ENST00000423463 MALSU1Q96EH3 234 aa1.98□□□□□ -2.09
VPS13A-208ENST00000423463 NEDD4LQ96PU5 975 aa1.98□□□□□ -2.09
VPS13A-208ENST00000423463 NKX3-1Q99801 234 aaPredicted RBP1.98□□□□□ -2.09
VPS13A-208ENST00000423463 TM2D1Q9BX74 207 aa1.98□□□□□ -2.09
VPS13A-208ENST00000423463 TMEM59Q9BXS4 323 aa1.98□□□□□ -2.09
VPS13A-208ENST00000423463 TMEM133Q9H2Q1 129 aa1.98□□□□□ -2.09
VPS13A-208ENST00000423463 RIMS4Q9H426 269 aaPredicted RBP1.98□□□□□ -2.09
VPS13A-208ENST00000423463 BANF2Q9H503 90 aa1.98□□□□□ -2.09
VPS13A-208ENST00000423463 PLGRKTQ9HBL7 147 aa1.98□□□□□ -2.09
VPS13A-208ENST00000423463 TXNL4BQ9NX01 149 aaKnown RBP1.98□□□□□ -2.09
VPS13A-208ENST00000423463 KIF25Q9UIL4 384 aa1.98□□□□□ -2.09
VPS13A-208ENST00000423463 RAB22AQ9UL26 194 aa1.98□□□□□ -2.09
VPS13A-208ENST00000423463 TMED3Q9Y3Q3 217 aa1.98□□□□□ -2.09
VPS13A-208ENST00000423463 TBL2Q9Y4P3 447 aaKnown RBP1.98□□□□□ -2.09
VPS13A-208ENST00000423463 DOCK11Q5JSL3 2073 aa1.98□□□□□ -2.09
VPS13A-208ENST00000423463 A0A0U1RQK1 487 aa1.97□□□□□ -2.09
VPS13A-208ENST00000423463 A0A1W2PRD5 423 aa1.97□□□□□ -2.09
VPS13A-208ENST00000423463 A0A1W2PRF3 423 aa1.97□□□□□ -2.09
VPS13A-208ENST00000423463 A0A1W2PRM7 423 aa1.97□□□□□ -2.09
VPS13A-208ENST00000423463 MEIOCA2RUB1 952 aa1.97□□□□□ -2.09
VPS13A-208ENST00000423463 TMEM89A2RUT3 159 aa1.97□□□□□ -2.09
VPS13A-208ENST00000423463 BTBD17A6NE02 478 aa1.97□□□□□ -2.09
VPS13A-208ENST00000423463 IFITM5A6NNB3 132 aa1.97□□□□□ -2.09
VPS13A-208ENST00000423463 ATP6V0E1O15342 81 aa1.97□□□□□ -2.09
Retrieved 100 of 20,778 RNA–protein pairs in 66.5 ms