RNA–Protein interactions for RNA: ENST00000423058.6

SCN1A-204, Transcript of sodium voltage-gated channel alpha subunit 1, humanhuman

APPRIS ALT1 TSL 1 (best) BASIC

Gene SCN1A, Length 8,191 nt, Biotype protein coding, Subcellular localisation Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SCN1A-204ENST00000423058 LILRA1O75019 489 aa5.96□□□□□ -1.46
SCN1A-204ENST00000423058 EGR1P18146 543 aa5.96□□□□□ -1.46
SCN1A-204ENST00000423058 IER3P46695 156 aa5.96□□□□□ -1.46
SCN1A-204ENST00000423058 JKAMPQ9P055 326 aa5.96□□□□□ -1.46
SCN1A-204ENST00000423058 TRIOBPQ9H2D6 2365 aa5.96□□□□□ -1.46
SCN1A-204ENST00000423058 TMEM250H0YL14 139 aa5.96□□□□□ -1.46
SCN1A-204ENST00000423058 HOXA3O43365 443 aaPredicted RBP5.96□□□□□ -1.46
SCN1A-204ENST00000423058 SLC16A13Q7RTY0 426 aa5.96□□□□□ -1.46
SCN1A-204ENST00000423058 PRSS41Q7RTY9 318 aa5.96□□□□□ -1.46
SCN1A-204ENST00000423058 WDFY2Q96P53 400 aa5.96□□□□□ -1.46
SCN1A-204ENST00000423058 PRSS27Q9BQR3 290 aa5.96□□□□□ -1.46
SCN1A-204ENST00000423058 TSC2P49815 1807 aa5.95□□□□□ -1.46
SCN1A-204ENST00000423058 IGHV4-34P06331 123 aa5.95□□□□□ -1.46
SCN1A-204ENST00000423058 APOBEC3AP31941 199 aaPredicted RBP5.95□□□□□ -1.46
SCN1A-204ENST00000423058 PIGYQ3MUY2 71 aa5.95□□□□□ -1.46
SCN1A-204ENST00000423058 C2orf83Q53S99 150 aa5.95□□□□□ -1.46
SCN1A-204ENST00000423058 NSUN5P2Q63ZY6 315 aa5.95□□□□□ -1.46
SCN1A-204ENST00000423058 DNASE2BQ8WZ79 361 aa5.95□□□□□ -1.46
SCN1A-204ENST00000423058 GUCD1Q96NT3 240 aa5.95□□□□□ -1.46
SCN1A-204ENST00000423058 TSPAN13O95857 204 aa5.95□□□□□ -1.46
SCN1A-204ENST00000423058 MT-ND6P03923 174 aa5.95□□□□□ -1.46
SCN1A-204ENST00000423058 PSG2P11465 335 aa5.95□□□□□ -1.46
SCN1A-204ENST00000423058 MPV17P39210 176 aa5.95□□□□□ -1.46
SCN1A-204ENST00000423058 ASIPP42127 132 aa5.95□□□□□ -1.46
SCN1A-204ENST00000423058 DTX1Q86Y01 620 aa5.95□□□□□ -1.46
SCN1A-204ENST00000423058 CADM3Q8N126 398 aa5.95□□□□□ -1.46
SCN1A-204ENST00000423058 DUX3Q96PT4 197 aa5.95□□□□□ -1.46
SCN1A-204ENST00000423058 ZNF430Q9H8G1 570 aaPredicted RBP5.95□□□□□ -1.46
SCN1A-204ENST00000423058 IGHV1-69-2A0A0G2JMI3 117 aa5.95□□□□□ -1.46
SCN1A-204ENST00000423058 PGPA6NDG6 321 aa5.95□□□□□ -1.46
SCN1A-204ENST00000423058 GDF9O60383 454 aa5.95□□□□□ -1.46
SCN1A-204ENST00000423058 CRPP02741 224 aa5.95□□□□□ -1.46
SCN1A-204ENST00000423058 FCGR3AP08637 254 aa5.95□□□□□ -1.46
SCN1A-204ENST00000423058 TDGF1P13385 188 aa5.95□□□□□ -1.46
SCN1A-204ENST00000423058 FAM3BP58499 235 aaPredicted RBP5.95□□□□□ -1.46
SCN1A-204ENST00000423058 MESTQ5EB52 335 aa5.95□□□□□ -1.46
SCN1A-204ENST00000423058 LOC102724200A0A096LPH7 203 aaPredicted RBP5.95□□□□□ -1.46
SCN1A-204ENST00000423058 IGHV1-45A0A0A0MS14 117 aa5.95□□□□□ -1.46
SCN1A-204ENST00000423058 NPIPB11E5RHQ5 1161 aa5.95□□□□□ -1.46
SCN1A-204ENST00000423058 MPZL1O95297 269 aa5.95□□□□□ -1.46
SCN1A-204ENST00000423058 CRHP06850 196 aa5.95□□□□□ -1.46
SCN1A-204ENST00000423058 CNTFRP26992 372 aa5.95□□□□□ -1.46
SCN1A-204ENST00000423058 ATG4DQ86TL0 474 aaPredicted RBP5.95□□□□□ -1.46
SCN1A-204ENST00000423058 LINC01555Q8NAE3 123 aa5.95□□□□□ -1.46
SCN1A-204ENST00000423058 RPP25Q9BUL9 199 aaKnown RBP5.95□□□□□ -1.46
SCN1A-204ENST00000423058 RTN4RQ9BZR6 473 aa5.95□□□□□ -1.46
SCN1A-204ENST00000423058 OPN3Q9H1Y3 402 aaPredicted RBP5.95□□□□□ -1.46
SCN1A-204ENST00000423058 TCRBV5S1A1TA0A578 114 aa5.95□□□□□ -1.46
SCN1A-204ENST00000423058 MYOD1P15172 320 aa5.95□□□□□ -1.46
SCN1A-204ENST00000423058 LEMD1Q68G75 181 aa5.95□□□□□ -1.46
SCN1A-204ENST00000423058 C16orf47Q6ZP98 133 aaPredicted RBP5.95□□□□□ -1.46
SCN1A-204ENST00000423058 FAM24BQ8N5W8 94 aa5.95□□□□□ -1.46
SCN1A-204ENST00000423058 CXCL16Q9H2A7 254 aa5.95□□□□□ -1.46
SCN1A-204ENST00000423058 PXMP4Q9Y6I8 212 aa5.95□□□□□ -1.46
SCN1A-204ENST00000423058 PTP4A3O75365 173 aa5.95□□□□□ -1.46
SCN1A-204ENST00000423058 COL9A1P20849 921 aa5.95□□□□□ -1.46
SCN1A-204ENST00000423058 MFAP2P55001 183 aa5.95□□□□□ -1.46
SCN1A-204ENST00000423058 C12orf54Q6X4T0 127 aa5.95□□□□□ -1.46
SCN1A-204ENST00000423058 H1FOOQ8IZA3 346 aaPredicted RBP5.95□□□□□ -1.46
SCN1A-204ENST00000423058 ITLN2Q8WWU7 325 aaPredicted RBP5.95□□□□□ -1.46
SCN1A-204ENST00000423058 TMEM186Q96B77 213 aa5.95□□□□□ -1.46
SCN1A-204ENST00000423058 SSBP3Q9BWW4 388 aaPredicted RBP5.95□□□□□ -1.46
SCN1A-204ENST00000423058 ABCA4P78363 2273 aa5.95□□□□□ -1.46
SCN1A-204ENST00000423058 SLC25A17O43808 307 aa5.95□□□□□ -1.46
SCN1A-204ENST00000423058 LINC00869P0C866 280 aa5.95□□□□□ -1.46
SCN1A-204ENST00000423058 RBM11P57052 281 aaKnown RBP5.95□□□□□ -1.46
SCN1A-204ENST00000423058 FGF12P61328 243 aa5.95□□□□□ -1.46
SCN1A-204ENST00000423058 RSPO4Q2I0M5 234 aaPredicted RBP5.95□□□□□ -1.46
SCN1A-204ENST00000423058 PLPPR5Q32ZL2 321 aa5.95□□□□□ -1.46
SCN1A-204ENST00000423058 GCSAMLQ5JQS6 135 aa5.95□□□□□ -1.46
SCN1A-204ENST00000423058 FAM74A4Q5TZK3 123 aa5.95□□□□□ -1.46
SCN1A-204ENST00000423058 LILRA6Q6PI73 481 aa5.95□□□□□ -1.46
SCN1A-204ENST00000423058 SPNS2Q8IVW8 549 aa5.95□□□□□ -1.46
SCN1A-204ENST00000423058 STHQ8IWL8 128 aa5.95□□□□□ -1.46
SCN1A-204ENST00000423058 KIR3DL3Q8N743 410 aa5.95□□□□□ -1.46
SCN1A-204ENST00000423058 PMCHL2Q9BQD1 86 aa5.95□□□□□ -1.46
SCN1A-204ENST00000423058 KCNE5Q9UJ90 142 aa5.95□□□□□ -1.46
SCN1A-204ENST00000423058 ZGRF1Q86YA3 2104 aa5.94□□□□□ -1.46
SCN1A-204ENST00000423058 ANKRD20A5PA0PJZ0 165 aa5.94□□□□□ -1.46
SCN1A-204ENST00000423058 H0Y980 276 aa5.94□□□□□ -1.46
SCN1A-204ENST00000423058 PAGE4O60829 102 aa5.94□□□□□ -1.46
SCN1A-204ENST00000423058 CELA2BP08218 269 aaPredicted RBP5.94□□□□□ -1.46
SCN1A-204ENST00000423058 PAX1P15863 534 aa5.94□□□□□ -1.46
SCN1A-204ENST00000423058 VDAC2P45880 294 aaPredicted RBP5.94□□□□□ -1.46
SCN1A-204ENST00000423058 CMC4P56277 68 aaPredicted RBP5.94□□□□□ -1.46
SCN1A-204ENST00000423058 ATP5IP56385 69 aaPredicted RBP5.94□□□□□ -1.46
SCN1A-204ENST00000423058 IBA57Q5T440 356 aaKnown RBP5.94□□□□□ -1.46
SCN1A-204ENST00000423058 ADAD2Q8NCV1 583 aaKnown RBP5.94□□□□□ -1.46
SCN1A-204ENST00000423058 OR10AG1Q8NH19 301 aa5.94□□□□□ -1.46
SCN1A-204ENST00000423058 CCL28Q9NRJ3 127 aa5.94□□□□□ -1.46
SCN1A-204ENST00000423058 NEU3Q9UQ49 428 aa5.94□□□□□ -1.46
SCN1A-204ENST00000423058 DSPPQ9NZW4 1301 aa5.94□□□□□ -1.46
SCN1A-204ENST00000423058 DRD3P35462 400 aa5.94□□□□□ -1.46
SCN1A-204ENST00000423058 NPFFR1Q9GZQ6 430 aa5.94□□□□□ -1.46
SCN1A-204ENST00000423058 DNAJC4Q9NNZ3 241 aa5.94□□□□□ -1.46
SCN1A-204ENST00000423058 YAE1D1Q9NRH1 226 aa5.94□□□□□ -1.46
SCN1A-204ENST00000423058 CEP250Q9BV73 2442 aa5.94□□□□□ -1.46
SCN1A-204ENST00000423058 TCRBV16S1A1N1A0A5B0 115 aa5.94□□□□□ -1.46
SCN1A-204ENST00000423058 TRGV3P03979 118 aa5.94□□□□□ -1.46
SCN1A-204ENST00000423058 TSPO2Q5TGU0 170 aa5.94□□□□□ -1.46
Retrieved 100 of 20,778 RNA–protein pairs in 34 ms