RNA–Protein interactions for RNA: ENST00000421922.6

CCDC28B-202, Transcript of coiled-coil domain containing 28B, humanhuman

TSL 1 (best) BASIC

Gene CCDC28B, Length 1,415 nt, Biotype protein coding, Subcellular localisation Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CCDC28B-202ENST00000421922 FCGR3BO75015 233 aa13.95□□□□□ -0.18
CCDC28B-202ENST00000421922 HOXB4P17483 251 aaPredicted RBP13.95□□□□□ -0.18
CCDC28B-202ENST00000421922 CXCL3P19876 107 aa13.95□□□□□ -0.18
CCDC28B-202ENST00000421922 GATA3P23771 443 aa13.95□□□□□ -0.18
CCDC28B-202ENST00000421922 AKR1C2P52895 323 aa13.95□□□□□ -0.18
CCDC28B-202ENST00000421922 RPL30P62888 115 aaKnown RBP13.95□□□□□ -0.18
CCDC28B-202ENST00000421922 EIF4EBP1Q13541 118 aaPredicted RBP13.95□□□□□ -0.18
CCDC28B-202ENST00000421922 RTL8BQ17RB0 113 aa13.95□□□□□ -0.18
CCDC28B-202ENST00000421922 LRTM2Q8N967 370 aa13.95□□□□□ -0.18
CCDC28B-202ENST00000421922 OR11H6Q8NGC7 330 aa13.95□□□□□ -0.18
CCDC28B-202ENST00000421922 IL22RA2Q969J5 263 aa13.95□□□□□ -0.18
CCDC28B-202ENST00000421922 RPEQ96AT9 228 aa13.95□□□□□ -0.18
CCDC28B-202ENST00000421922 MSI2Q96DH6 328 aaKnown RBP13.95□□□□□ -0.18
CCDC28B-202ENST00000421922 FOXC2Q99958 501 aa13.95□□□□□ -0.18
CCDC28B-202ENST00000421922 FAM212BQ9NTI7 297 aaPredicted RBP13.95□□□□□ -0.18
CCDC28B-202ENST00000421922 LINC00473A8K010 186 aa13.94□□□□□ -0.18
CCDC28B-202ENST00000421922 SIX6O95475 246 aa13.94□□□□□ -0.18
CCDC28B-202ENST00000421922 IGLV1-47P01700 117 aa13.94□□□□□ -0.18
CCDC28B-202ENST00000421922 HTR1DP28221 377 aa13.94□□□□□ -0.18
CCDC28B-202ENST00000421922 LPAR6P43657 344 aa13.94□□□□□ -0.18
CCDC28B-202ENST00000421922 GZMKP49863 264 aa13.94□□□□□ -0.18
CCDC28B-202ENST00000421922 ZNF137PP52743 207 aa13.94□□□□□ -0.18
CCDC28B-202ENST00000421922 TAGLNQ01995 201 aaKnown RBP13.94□□□□□ -0.18
CCDC28B-202ENST00000421922 ZNF816Q0VGE8 651 aaPredicted RBP13.94□□□□□ -0.18
CCDC28B-202ENST00000421922 PDZD9Q8IXQ8 264 aa13.94□□□□□ -0.18
CCDC28B-202ENST00000421922 OR4S2Q8NH73 311 aa13.94□□□□□ -0.18
CCDC28B-202ENST00000421922 ASB13Q8WXK3 278 aa13.94□□□□□ -0.18
CCDC28B-202ENST00000421922 LHX4Q969G2 390 aa13.94□□□□□ -0.18
CCDC28B-202ENST00000421922 TMEM56Q96MV1 263 aa13.94□□□□□ -0.18
CCDC28B-202ENST00000421922 SPIN2AQ99865 258 aa13.94□□□□□ -0.18
CCDC28B-202ENST00000421922 SPIN2BQ9BPZ2 258 aa13.94□□□□□ -0.18
CCDC28B-202ENST00000421922 NEURL2Q9BR09 285 aa13.94□□□□□ -0.18
CCDC28B-202ENST00000421922 HIF1ANQ9NWT6 349 aa13.94□□□□□ -0.18
CCDC28B-202ENST00000421922 TMED3Q9Y3Q3 217 aa13.94□□□□□ -0.18
CCDC28B-202ENST00000421922 TMEM56-RWDD3S4R434 201 aa13.94□□□□□ -0.18
CCDC28B-202ENST00000421922 A0A096LNT2 108 aa13.93□□□□□ -0.18
CCDC28B-202ENST00000421922 DBX1A6NMT0 343 aa13.93□□□□□ -0.18
CCDC28B-202ENST00000421922 LEUTXA8MZ59 168 aa13.93□□□□□ -0.18
CCDC28B-202ENST00000421922 BUB1B-PAK6H3BSN5 160 aa13.93□□□□□ -0.18
CCDC28B-202ENST00000421922 ADAP1O75689 374 aa13.93□□□□□ -0.18
CCDC28B-202ENST00000421922 CDS2O95674 445 aa13.93□□□□□ -0.18
CCDC28B-202ENST00000421922 GAPDHP04406 335 aaKnown RBP13.93□□□□□ -0.18
CCDC28B-202ENST00000421922 GIPP09681 153 aaPredicted RBP13.93□□□□□ -0.18
CCDC28B-202ENST00000421922 EPHA1P21709 976 aa13.93□□□□□ -0.18
CCDC28B-202ENST00000421922 REG1BP48304 166 aa13.93□□□□□ -0.18
CCDC28B-202ENST00000421922 PAX8Q06710 450 aa13.93□□□□□ -0.18
CCDC28B-202ENST00000421922 THOC7Q6I9Y2 204 aaKnown RBP13.93□□□□□ -0.18
CCDC28B-202ENST00000421922 SELENOHQ8IZQ5 122 aaKnown RBP13.93□□□□□ -0.18
CCDC28B-202ENST00000421922 SLC35G3Q8N808 338 aa13.93□□□□□ -0.18
CCDC28B-202ENST00000421922 MAPK1IP1LQ8NDC0 245 aa13.93□□□□□ -0.18
CCDC28B-202ENST00000421922 RRNAD1Q96FB5 475 aaKnown RBP13.93□□□□□ -0.18
CCDC28B-202ENST00000421922 C1orf159Q96HA4 380 aa13.93□□□□□ -0.18
CCDC28B-202ENST00000421922 ZNF251Q9BRH9 671 aa13.93□□□□□ -0.18
CCDC28B-202ENST00000421922 MRPL20Q9BYC9 149 aaKnown RBP13.93□□□□□ -0.18
CCDC28B-202ENST00000421922 RANGRFQ9HD47 186 aaPredicted RBP13.93□□□□□ -0.18
CCDC28B-202ENST00000421922 SLC35D1Q9NTN3 355 aa13.93□□□□□ -0.18
CCDC28B-202ENST00000421922 AUP1Q9Y679 476 aa13.93□□□□□ -0.18
CCDC28B-202ENST00000421922 A0A1W2PRD5 423 aa13.92□□□□□ -0.18
CCDC28B-202ENST00000421922 A0A1W2PRF3 423 aa13.92□□□□□ -0.18
CCDC28B-202ENST00000421922 A0A1W2PRM7 423 aa13.92□□□□□ -0.18
CCDC28B-202ENST00000421922 H7C2Y5 167 aa13.92□□□□□ -0.18
CCDC28B-202ENST00000421922 RRASP10301 218 aa13.92□□□□□ -0.18
CCDC28B-202ENST00000421922 MMP9P14780 707 aa13.92□□□□□ -0.18
CCDC28B-202ENST00000421922 RAP2BP61225 183 aa13.92□□□□□ -0.18
CCDC28B-202ENST00000421922 ERVK-16P61578 105 aa13.92□□□□□ -0.18
CCDC28B-202ENST00000421922 CYCSP99999 105 aaKnown RBP13.92□□□□□ -0.18
CCDC28B-202ENST00000421922 C2orf68Q2NKX9 166 aa13.92□□□□□ -0.18
CCDC28B-202ENST00000421922 GGNBP1Q5YKI7 109 aa13.92□□□□□ -0.18
CCDC28B-202ENST00000421922 OR4P4Q8NGL7 312 aa13.92□□□□□ -0.18
CCDC28B-202ENST00000421922 PPP1R14BQ96C90 147 aa13.92□□□□□ -0.18
CCDC28B-202ENST00000421922 C18orf12Q96KH6 178 aa13.92□□□□□ -0.18
CCDC28B-202ENST00000421922 TBX15Q96SF7 602 aa13.92□□□□□ -0.18
CCDC28B-202ENST00000421922 C7orf69Q9H7B7 122 aa13.92□□□□□ -0.18
CCDC28B-202ENST00000421922 COMMD9Q9P000 198 aa13.92□□□□□ -0.18
CCDC28B-202ENST00000421922 DPM3Q9P2X0 92 aa13.92□□□□□ -0.18
CCDC28B-202ENST00000421922 ODF3BA8MYP8 253 aa13.91□□□□□ -0.18
CCDC28B-202ENST00000421922 RNASEK-C17orf49H0YIS7 233 aa13.91□□□□□ -0.18
CCDC28B-202ENST00000421922 RBFOX2O43251 390 aaKnown RBP eCLIP13.91□□□□□ -0.18
CCDC28B-202ENST00000421922 HNRNPCP07910 306 aaKnown RBP eCLIP13.91□□□□□ -0.18
CCDC28B-202ENST00000421922 HLA-GP17693 338 aa13.91□□□□□ -0.18
CCDC28B-202ENST00000421922 RAB13P51153 203 aa13.91□□□□□ -0.18
CCDC28B-202ENST00000421922 UBE2E1P51965 193 aa13.91□□□□□ -0.18
CCDC28B-202ENST00000421922 TMEM249Q2WGJ8 235 aa13.91□□□□□ -0.18
CCDC28B-202ENST00000421922 DHRS7BQ6IAN0 325 aaPredicted RBP13.91□□□□□ -0.18
CCDC28B-202ENST00000421922 LYZL2Q7Z4W2 148 aa13.91□□□□□ -0.18
CCDC28B-202ENST00000421922 KRTAP1-3Q8IUG1 177 aa13.91□□□□□ -0.18
CCDC28B-202ENST00000421922 LHFPL5Q8TAF8 219 aa13.91□□□□□ -0.18
CCDC28B-202ENST00000421922 ST6GAL2Q96JF0 529 aa13.91□□□□□ -0.18
CCDC28B-202ENST00000421922 PRPF8Q6P2Q9 2335 aaKnown RBP eCLIP13.91□□□□□ -0.18
CCDC28B-202ENST00000421922 CR1P17927 2039 aa13.91□□□□□ -0.18
CCDC28B-202ENST00000421922 RAMP3O60896 148 aa13.9□□□□□ -0.18
CCDC28B-202ENST00000421922 PROP1O75360 226 aa13.9□□□□□ -0.18
CCDC28B-202ENST00000421922 S1PR2O95136 353 aa13.9□□□□□ -0.18
CCDC28B-202ENST00000421922 CRYZL1O95825 349 aa13.9□□□□□ -0.18
CCDC28B-202ENST00000421922 HPRT1P00492 218 aa13.9□□□□□ -0.18
CCDC28B-202ENST00000421922 TGFAP01135 160 aa13.9□□□□□ -0.18
CCDC28B-202ENST00000421922 CT45A6P0DMU7 189 aa13.9□□□□□ -0.18
CCDC28B-202ENST00000421922 CT45A5P0DMU8 189 aa13.9□□□□□ -0.18
CCDC28B-202ENST00000421922 CT45A7P0DMV0 189 aa13.9□□□□□ -0.18
CCDC28B-202ENST00000421922 VDAC1P21796 283 aa13.9□□□□□ -0.18
Retrieved 100 of 20,778 RNA–protein pairs in 81.7 ms