RNA–Protein interactions for RNA: ENST00000416417.5

USP4-204, Transcript of ubiquitin specific peptidase 4, humanhuman

TSL 2 BASIC

Gene USP4, Length 1,536 nt, Biotype protein coding, Subcellular localisation Endoplasmic reticulum, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
USP4-204ENST00000416417 CNIH1O95406 144 aa8.87□□□□□ -0.99
USP4-204ENST00000416417 TFAP2AP05549 437 aa8.87□□□□□ -0.99
USP4-204ENST00000416417 OR8U9P0C7N5 309 aa8.87□□□□□ -0.99
USP4-204ENST00000416417 CALRP27797 417 aaKnown RBP8.87□□□□□ -0.99
USP4-204ENST00000416417 AQP4P55087 323 aa8.87□□□□□ -0.99
USP4-204ENST00000416417 FABP5Q01469 135 aa8.87□□□□□ -0.99
USP4-204ENST00000416417 C2orf76Q3KRA6 126 aa8.87□□□□□ -0.99
USP4-204ENST00000416417 IGSF11Q5DX21 431 aa8.87□□□□□ -0.99
USP4-204ENST00000416417 ZFAND6Q6FIF0 208 aa8.87□□□□□ -0.99
USP4-204ENST00000416417 NRG4Q8WWG1 115 aa8.87□□□□□ -0.99
USP4-204ENST00000416417 EDARADDQ8WWZ3 215 aa8.87□□□□□ -0.99
USP4-204ENST00000416417 FAM3DQ96BQ1 224 aa8.87□□□□□ -0.99
USP4-204ENST00000416417 FLYWCH2Q96CP2 140 aaKnown RBP8.87□□□□□ -0.99
USP4-204ENST00000416417 TSNAXQ99598 290 aaKnown RBP8.87□□□□□ -0.99
USP4-204ENST00000416417 CCDC90BQ9GZT6 254 aa8.87□□□□□ -0.99
USP4-204ENST00000416417 RIMS4Q9H426 269 aaPredicted RBP8.87□□□□□ -0.99
USP4-204ENST00000416417 KCNK7Q9Y2U2 307 aa8.87□□□□□ -0.99
USP4-204ENST00000416417 RYR2Q92736 4967 aa8.87□□□□□ -0.99
USP4-204ENST00000416417 A0A075B6Q4 140 aa8.86□□□□□ -0.99
USP4-204ENST00000416417 A0A0B4J203 849 aa8.86□□□□□ -0.99
USP4-204ENST00000416417 TMEM272A0A1B0GTI8 110 aa8.86□□□□□ -0.99
USP4-204ENST00000416417 TRDCB7Z8K6 153 aa8.86□□□□□ -0.99
USP4-204ENST00000416417 IGLV2-23P01705 113 aa8.86□□□□□ -0.99
USP4-204ENST00000416417 TRBV12-3P01733 135 aa8.86□□□□□ -0.99
USP4-204ENST00000416417 APOA2P02652 100 aa8.86□□□□□ -0.99
USP4-204ENST00000416417 GSTT2P0CG29 244 aa8.86□□□□□ -0.99
USP4-204ENST00000416417 GSTT2BP0CG30 244 aa8.86□□□□□ -0.99
USP4-204ENST00000416417 IGHV4-30-4P0DP06 118 aa8.86□□□□□ -0.99
USP4-204ENST00000416417 PYHIN1Q6K0P9 492 aa8.86□□□□□ -0.99
USP4-204ENST00000416417 Q8N1Y9 231 aa8.86□□□□□ -0.99
USP4-204ENST00000416417 POC5Q8NA72 575 aa8.86□□□□□ -0.99
USP4-204ENST00000416417 PTX4Q96A99 478 aa8.86□□□□□ -0.99
USP4-204ENST00000416417 RNF5Q99942 180 aa8.86□□□□□ -0.99
USP4-204ENST00000416417 OR2D2Q9H210 308 aa8.86□□□□□ -0.99
USP4-204ENST00000416417 ZNF230Q9UIE0 474 aaPredicted RBP8.86□□□□□ -0.99
USP4-204ENST00000416417 HSF4Q9ULV5 492 aa8.86□□□□□ -0.99
USP4-204ENST00000416417 TENM2Q9NT68 2774 aa8.85□□□□□ -0.99
USP4-204ENST00000416417 C13orf42A0A1B0GVH6 325 aa8.85□□□□□ -0.99
USP4-204ENST00000416417 SRRM4A7MD48 611 aaKnown RBP8.85□□□□□ -0.99
USP4-204ENST00000416417 J3QRK9 145 aa8.85□□□□□ -0.99
USP4-204ENST00000416417 DENRO43583 198 aaKnown RBP8.85□□□□□ -0.99
USP4-204ENST00000416417 RBMXL2O75526 392 aaKnown RBP8.85□□□□□ -0.99
USP4-204ENST00000416417 CD40LGP29965 261 aa8.85□□□□□ -0.99
USP4-204ENST00000416417 OR10A3P58181 314 aa8.85□□□□□ -0.99
USP4-204ENST00000416417 TPBGQ13641 420 aa8.85□□□□□ -0.99
USP4-204ENST00000416417 PDPNQ86YL7 162 aa8.85□□□□□ -0.99
USP4-204ENST00000416417 BVESQ8NE79 360 aa8.85□□□□□ -0.99
USP4-204ENST00000416417 VCXQ9H320 206 aa8.85□□□□□ -0.99
USP4-204ENST00000416417 SDHAF2Q9NX18 166 aa8.85□□□□□ -0.99
USP4-204ENST00000416417 DYNC2H1Q8NCM8 4307 aaKnown RBP8.85□□□□□ -0.99
USP4-204ENST00000416417 DNAH7Q8WXX0 4024 aa8.85□□□□□ -0.99
USP4-204ENST00000416417 SHISA3A0PJX4 238 aa8.85□□□□□ -0.99
USP4-204ENST00000416417 LDLRAD4O15165 306 aa8.85□□□□□ -0.99
USP4-204ENST00000416417 FABP7O15540 132 aa8.85□□□□□ -0.99
USP4-204ENST00000416417 RGS10O43665 173 aa8.85□□□□□ -0.99
USP4-204ENST00000416417 SPDEFO95238 335 aa8.85□□□□□ -0.99
USP4-204ENST00000416417 IGLV1-51P01701 117 aa8.85□□□□□ -0.99
USP4-204ENST00000416417 CRYGBP07316 175 aa8.85□□□□□ -0.99
USP4-204ENST00000416417 FCGR3AP08637 254 aa8.85□□□□□ -0.99
USP4-204ENST00000416417 LYL1P12980 280 aa8.85□□□□□ -0.99
USP4-204ENST00000416417 GNB3P16520 340 aa8.85□□□□□ -0.99
USP4-204ENST00000416417 SYNJ2BPP57105 145 aa8.85□□□□□ -0.99
USP4-204ENST00000416417 MRGPRG-AS1Q2M3A8 158 aa8.85□□□□□ -0.99
USP4-204ENST00000416417 IDO2Q6ZQW0 420 aa8.85□□□□□ -0.99
USP4-204ENST00000416417 ANKRD13BQ86YJ7 626 aa8.85□□□□□ -0.99
USP4-204ENST00000416417 OR56B1Q8NGI3 324 aa8.85□□□□□ -0.99
USP4-204ENST00000416417 HARBI1Q96MB7 349 aa8.85□□□□□ -0.99
USP4-204ENST00000416417 ELOVL1Q9BW60 279 aa8.85□□□□□ -0.99
USP4-204ENST00000416417 SLA2Q9H6Q3 261 aa8.85□□□□□ -0.99
USP4-204ENST00000416417 ZMAT4Q9H898 229 aa8.85□□□□□ -0.99
USP4-204ENST00000416417 ELF5Q9UKW6 265 aaPredicted RBP8.85□□□□□ -0.99
USP4-204ENST00000416417 MGAT4AQ9UM21 535 aa8.85□□□□□ -0.99
USP4-204ENST00000416417 STUB1Q9UNE7 303 aa8.85□□□□□ -0.99
USP4-204ENST00000416417 V9GY05 133 aa8.85□□□□□ -0.99
USP4-204ENST00000416417 IGKV1D-8A0A087WSZ0 117 aa8.84□□□□□ -0.99
USP4-204ENST00000416417 SMIM30A4D0T7 59 aa8.84□□□□□ -0.99
USP4-204ENST00000416417 ARL6IP5O75915 188 aa8.84□□□□□ -0.99
USP4-204ENST00000416417 PRH1P02810 166 aa8.84□□□□□ -0.99
USP4-204ENST00000416417 TAGLNQ01995 201 aaKnown RBP8.84□□□□□ -0.99
USP4-204ENST00000416417 IL34Q6ZMJ4 242 aa8.84□□□□□ -0.99
USP4-204ENST00000416417 OR4A4PQ8NGN8 299 aa8.84□□□□□ -0.99
USP4-204ENST00000416417 RAB3CQ96E17 227 aa8.84□□□□□ -0.99
USP4-204ENST00000416417 MGLLQ99685 303 aa8.84□□□□□ -0.99
USP4-204ENST00000416417 DUSP21Q9H596 190 aa8.84□□□□□ -0.99
USP4-204ENST00000416417 RANGRFQ9HD47 186 aaPredicted RBP8.84□□□□□ -0.99
USP4-204ENST00000416417 COA4Q9NYJ1 87 aa8.84□□□□□ -0.99
USP4-204ENST00000416417 TPRKBQ9Y3C4 175 aa8.84□□□□□ -0.99
USP4-204ENST00000416417 SORL1Q92673 2214 aa8.83□□□□□ -1
USP4-204ENST00000416417 IZUMO1RA6ND01 250 aa8.83□□□□□ -1
USP4-204ENST00000416417 MSGN1A6NI15 193 aa8.83□□□□□ -1
USP4-204ENST00000416417 SHOXO15266 292 aa8.83□□□□□ -1
USP4-204ENST00000416417 MRPS15P82914 257 aaKnown RBP8.83□□□□□ -1
USP4-204ENST00000416417 MLLT11Q13015 90 aaPredicted RBP8.83□□□□□ -1
USP4-204ENST00000416417 DYRK1AQ13627 763 aa8.83□□□□□ -1
USP4-204ENST00000416417 KLF5Q13887 457 aaPredicted RBP8.83□□□□□ -1
USP4-204ENST00000416417 SSX1Q16384 188 aa8.83□□□□□ -1
USP4-204ENST00000416417 OR10J5Q8NHC4 309 aa8.83□□□□□ -1
USP4-204ENST00000416417 PHB2Q99623 299 aa8.83□□□□□ -1
USP4-204ENST00000416417 TM2D3Q9BRN9 247 aa8.83□□□□□ -1
USP4-204ENST00000416417 PALMDQ9NP74 551 aa8.83□□□□□ -1
Retrieved 100 of 20,778 RNA–protein pairs in 40.8 ms