RNA–Protein interactions for RNA: ENST00000415083.6

SS18-203, Transcript of SS18, nBAF chromatin remodeling complex subunit, humanhuman

APPRIS P3 TSL 1 (best) BASIC

Gene SS18, Length 3,414 nt, Biotype protein coding, Subcellular localisation Cytoplasm, Cytosol, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SS18-203ENST00000415083 LILRB2Q8N423 598 aa8.23□□□□□ -1.09
SS18-203ENST00000415083 ZNF114Q8NC26 417 aa8.23□□□□□ -1.09
SS18-203ENST00000415083 SCGB1C1Q8TD33 95 aa8.23□□□□□ -1.09
SS18-203ENST00000415083 MISP3Q96FF7 219 aa8.23□□□□□ -1.09
SS18-203ENST00000415083 DSCAML1Q8TD84 2053 aa8.23□□□□□ -1.09
SS18-203ENST00000415083 IGHV3-43A0A0B4J1X8 118 aa8.22□□□□□ -1.09
SS18-203ENST00000415083 SMCO3A2RU48 225 aa8.22□□□□□ -1.09
SS18-203ENST00000415083 LYZL6O75951 148 aa8.22□□□□□ -1.09
SS18-203ENST00000415083 KBTBD11O94819 623 aa8.22□□□□□ -1.09
SS18-203ENST00000415083 HBZP02008 142 aa8.22□□□□□ -1.09
SS18-203ENST00000415083 AMBPP02760 352 aa8.22□□□□□ -1.09
SS18-203ENST00000415083 IGHV3-43DP0DP04 118 aa8.22□□□□□ -1.09
SS18-203ENST00000415083 BMP5P22003 454 aa8.22□□□□□ -1.09
SS18-203ENST00000415083 PNRC1Q12796 327 aaPredicted RBP8.22□□□□□ -1.09
SS18-203ENST00000415083 SRSF6Q13247 344 aaKnown RBP8.22□□□□□ -1.09
SS18-203ENST00000415083 GUSBP1Q15486 140 aa8.22□□□□□ -1.09
SS18-203ENST00000415083 ADIRFQ15847 76 aa8.22□□□□□ -1.09
SS18-203ENST00000415083 OR13A1Q8NGR1 328 aa8.22□□□□□ -1.09
SS18-203ENST00000415083 IER2Q9BTL4 223 aa8.22□□□□□ -1.09
SS18-203ENST00000415083 LIN7CQ9NUP9 197 aaKnown RBP8.22□□□□□ -1.09
SS18-203ENST00000415083 C15orf62A8K5M9 175 aa8.22□□□□□ -1.09
SS18-203ENST00000415083 IQCF6A8MYZ5 107 aa8.22□□□□□ -1.09
SS18-203ENST00000415083 LAMTOR5O43504 91 aa8.22□□□□□ -1.09
SS18-203ENST00000415083 AGFG2O95081 481 aa8.22□□□□□ -1.09
SS18-203ENST00000415083 OR9G9P0C7N8 305 aa8.22□□□□□ -1.09
SS18-203ENST00000415083 CD59P13987 128 aa8.22□□□□□ -1.09
SS18-203ENST00000415083 IDH3GP51553 393 aaPredicted RBP8.22□□□□□ -1.09
SS18-203ENST00000415083 PLP2Q04941 152 aa8.22□□□□□ -1.09
SS18-203ENST00000415083 SNIP1Q8TAD8 396 aaKnown RBP8.22□□□□□ -1.09
SS18-203ENST00000415083 DERL1Q9BUN8 251 aa8.22□□□□□ -1.09
SS18-203ENST00000415083 NPCDR1Q9BY65 106 aa8.22□□□□□ -1.09
SS18-203ENST00000415083 TIMM9Q9Y5J7 89 aa8.22□□□□□ -1.09
SS18-203ENST00000415083 C15orf65H3BRN8 121 aa8.22□□□□□ -1.09
SS18-203ENST00000415083 CLDN1O95832 211 aa8.22□□□□□ -1.09
SS18-203ENST00000415083 GZMBP10144 247 aa8.22□□□□□ -1.09
SS18-203ENST00000415083 GNB2P62879 340 aa8.22□□□□□ -1.09
SS18-203ENST00000415083 PRAMEF6Q5VXH4 476 aa8.22□□□□□ -1.09
SS18-203ENST00000415083 MOB1BQ7L9L4 216 aa8.22□□□□□ -1.09
SS18-203ENST00000415083 GCNT2Q8N0V5 402 aa8.22□□□□□ -1.09
SS18-203ENST00000415083 KLF14Q8TD94 323 aaPredicted RBP8.22□□□□□ -1.09
SS18-203ENST00000415083 LHX4Q969G2 390 aa8.22□□□□□ -1.09
SS18-203ENST00000415083 RPUSD4Q96CM3 377 aaKnown RBP8.22□□□□□ -1.09
SS18-203ENST00000415083 RTL8AQ9BWD3 113 aa8.22□□□□□ -1.09
SS18-203ENST00000415083 FZR1Q9UM11 496 aa8.22□□□□□ -1.09
SS18-203ENST00000415083 A0A1B0GUS0 222 aa8.21□□□□□ -1.09
SS18-203ENST00000415083 PRSS46E5RG02 174 aa8.21□□□□□ -1.09
SS18-203ENST00000415083 CDX4O14627 284 aaPredicted RBP8.21□□□□□ -1.09
SS18-203ENST00000415083 NXPH2O95156 264 aa8.21□□□□□ -1.09
SS18-203ENST00000415083 PLGLB1Q02325 96 aa8.21□□□□□ -1.09
SS18-203ENST00000415083 WDR31Q8NA23 367 aa8.21□□□□□ -1.09
SS18-203ENST00000415083 MRGPRDQ8TDS7 321 aa8.21□□□□□ -1.09
SS18-203ENST00000415083 PCGF1Q9BSM1 259 aa8.21□□□□□ -1.09
SS18-203ENST00000415083 MRPL37Q9BZE1 423 aaKnown RBP8.21□□□□□ -1.09
SS18-203ENST00000415083 ARRDC1-AS1Q9H2J1 176 aa8.21□□□□□ -1.09
SS18-203ENST00000415083 B4GALT7Q9UBV7 327 aa8.21□□□□□ -1.09
SS18-203ENST00000415083 TRBV20OR9-2A0A075B6H5 130 aa8.21□□□□□ -1.1
SS18-203ENST00000415083 PGPEP1LA6NFU8 196 aa8.21□□□□□ -1.1
SS18-203ENST00000415083 DEFB108AA8MXU0 73 aa8.21□□□□□ -1.1
SS18-203ENST00000415083 FAM90A26D6RGX4 464 aa8.21□□□□□ -1.1
SS18-203ENST00000415083 TSTD3H0UI37 97 aa8.21□□□□□ -1.1
SS18-203ENST00000415083 LRP11Q86VZ4 500 aa8.21□□□□□ -1.1
SS18-203ENST00000415083 CD177Q8N6Q3 437 aa8.21□□□□□ -1.1
SS18-203ENST00000415083 RAB24Q969Q5 203 aa8.21□□□□□ -1.1
SS18-203ENST00000415083 SMIM7Q9BQ49 75 aa8.21□□□□□ -1.1
SS18-203ENST00000415083 ATG101Q9BSB4 218 aa8.21□□□□□ -1.1
SS18-203ENST00000415083 QTRT1Q9BXR0 403 aaKnown RBP8.21□□□□□ -1.1
SS18-203ENST00000415083 SRD5A3Q9H8P0 318 aa8.21□□□□□ -1.1
SS18-203ENST00000415083 RYDENQ9NUL5 291 aaKnown RBP8.21□□□□□ -1.1
SS18-203ENST00000415083 AURKAIP1Q9NWT8 199 aaPredicted RBP8.21□□□□□ -1.1
SS18-203ENST00000415083 NAT8Q9UHE5 227 aa8.21□□□□□ -1.1
SS18-203ENST00000415083 LAMP3Q9UQV4 416 aa8.21□□□□□ -1.1
SS18-203ENST00000415083 DSCAMO60469 2012 aa8.21□□□□□ -1.1
SS18-203ENST00000415083 ZZEF1O43149 2961 aa8.21□□□□□ -1.1
SS18-203ENST00000415083 ELOA3CA0A087WX78 387 aaPredicted RBP8.2□□□□□ -1.1
SS18-203ENST00000415083 PKIAP61925 76 aa8.2□□□□□ -1.1
SS18-203ENST00000415083 HBG1P69891 147 aa8.2□□□□□ -1.1
SS18-203ENST00000415083 HBG2P69892 147 aa8.2□□□□□ -1.1
SS18-203ENST00000415083 FOXF2Q12947 444 aa8.2□□□□□ -1.1
SS18-203ENST00000415083 GABRA6Q16445 453 aa8.2□□□□□ -1.1
SS18-203ENST00000415083 NCR3LG1Q68D85 454 aa8.2□□□□□ -1.1
SS18-203ENST00000415083 WDR82Q6UXN9 313 aa8.2□□□□□ -1.1
SS18-203ENST00000415083 REC114Q7Z4M0 266 aa8.2□□□□□ -1.1
SS18-203ENST00000415083 ZDHHC11Q9H8X9 412 aa8.2□□□□□ -1.1
SS18-203ENST00000415083 DCHS2Q6V1P9 2916 aa8.2□□□□□ -1.1
SS18-203ENST00000415083 TRAV3A0A0B4J244 114 aa8.2□□□□□ -1.1
SS18-203ENST00000415083 ST8SIA5O15466 376 aa8.2□□□□□ -1.1
SS18-203ENST00000415083 NUPR1O60356 82 aa8.2□□□□□ -1.1
SS18-203ENST00000415083 FGF7P21781 194 aa8.2□□□□□ -1.1
SS18-203ENST00000415083 ZNF134P52741 427 aa8.2□□□□□ -1.1
SS18-203ENST00000415083 GNB1P62873 340 aa8.2□□□□□ -1.1
SS18-203ENST00000415083 CYB5R2Q6BCY4 276 aa8.2□□□□□ -1.1
SS18-203ENST00000415083 ACP7Q6ZNF0 438 aa8.2□□□□□ -1.1
SS18-203ENST00000415083 OR10A7Q8NGE5 316 aa8.2□□□□□ -1.1
SS18-203ENST00000415083 OR10G9Q8NGN4 311 aa8.2□□□□□ -1.1
SS18-203ENST00000415083 OR10G7Q8NGN6 311 aa8.2□□□□□ -1.1
SS18-203ENST00000415083 TMEM37Q8WXS4 190 aa8.2□□□□□ -1.1
SS18-203ENST00000415083 ZPBPQ9BS86 351 aa8.2□□□□□ -1.1
SS18-203ENST00000415083 RAI1Q7Z5J4 1906 aaPredicted RBP8.2□□□□□ -1.1
SS18-203ENST00000415083 RRHO14718 337 aa8.2□□□□□ -1.1
SS18-203ENST00000415083 SH2D1BO14796 132 aa8.2□□□□□ -1.1
Retrieved 100 of 20,778 RNA–protein pairs in 9.2 ms