RNA–Protein interactions for RNA: ENST00000409326.6

PTCD3-202, Transcript of pentatricopeptide repeat domain 3, humanhuman

TSL 4

Gene PTCD3, Length 522 nt, Biotype nonsense mediated decay, Subcellular localisation Endoplasmic reticulum, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
PTCD3-202ENST00000409326 APOA2P02652 100 aa16.13■□□□□ 0.17
PTCD3-202ENST00000409326 DUTP33316 252 aaKnown RBP16.13■□□□□ 0.17
PTCD3-202ENST00000409326 S100A5P33763 92 aa16.13■□□□□ 0.17
PTCD3-202ENST00000409326 THBS3P49746 956 aa16.13■□□□□ 0.17
PTCD3-202ENST00000409326 F2RL1P55085 397 aa16.13■□□□□ 0.17
PTCD3-202ENST00000409326 SSBP1Q04837 148 aaKnown RBP16.13■□□□□ 0.17
PTCD3-202ENST00000409326 MMDQ15546 238 aa16.13■□□□□ 0.17
PTCD3-202ENST00000409326 ACTBL2Q562R1 376 aa16.13■□□□□ 0.17
PTCD3-202ENST00000409326 PDPNQ86YL7 162 aa16.13■□□□□ 0.17
PTCD3-202ENST00000409326 ADTRPQ96IZ2 230 aa16.13■□□□□ 0.17
PTCD3-202ENST00000409326 SOSTQ9BQB4 213 aa16.13■□□□□ 0.17
PTCD3-202ENST00000409326 SERTAD4Q9NUC0 356 aa16.13■□□□□ 0.17
PTCD3-202ENST00000409326 LIN7CQ9NUP9 197 aaKnown RBP16.13■□□□□ 0.17
PTCD3-202ENST00000409326 RBMX2Q9Y388 322 aaKnown RBP16.13■□□□□ 0.17
PTCD3-202ENST00000409326 FABP12A6NFH5 140 aa16.12■□□□□ 0.17
PTCD3-202ENST00000409326 FXYD4P59646 89 aa16.12■□□□□ 0.17
PTCD3-202ENST00000409326 HERV-K104P61576 105 aa16.12■□□□□ 0.17
PTCD3-202ENST00000409326 TAGLNQ01995 201 aaKnown RBP16.12■□□□□ 0.17
PTCD3-202ENST00000409326 MSMO1Q15800 293 aa16.12■□□□□ 0.17
PTCD3-202ENST00000409326 ARSJQ5FYB0 599 aaPredicted RBP16.12■□□□□ 0.17
PTCD3-202ENST00000409326 VAX1Q5SQQ9 334 aa16.12■□□□□ 0.17
PTCD3-202ENST00000409326 FAM71E2Q8N5Q1 922 aa16.12■□□□□ 0.17
PTCD3-202ENST00000409326 SECTM1Q8WVN6 248 aa16.12■□□□□ 0.17
PTCD3-202ENST00000409326 RITA1Q96K30 269 aa16.12■□□□□ 0.17
PTCD3-202ENST00000409326 ZNF2Q9BSG1 426 aaPredicted RBP16.12■□□□□ 0.17
PTCD3-202ENST00000409326 SLC35D1Q9NTN3 355 aa16.12■□□□□ 0.17
PTCD3-202ENST00000409326 HAX1O00165 279 aa16.11■□□□□ 0.17
PTCD3-202ENST00000409326 NBR2O15453 112 aa16.11■□□□□ 0.17
PTCD3-202ENST00000409326 IGKV1-16P04430 117 aa16.11■□□□□ 0.17
PTCD3-202ENST00000409326 TBPP20226 339 aa16.11■□□□□ 0.17
PTCD3-202ENST00000409326 VDAC2P45880 294 aaPredicted RBP16.11■□□□□ 0.17
PTCD3-202ENST00000409326 TMEM95Q3KNT9 176 aa16.11■□□□□ 0.17
PTCD3-202ENST00000409326 C9orf152Q5JTZ5 239 aa16.11■□□□□ 0.17
PTCD3-202ENST00000409326 NPBQ8NG41 125 aa16.11■□□□□ 0.17
PTCD3-202ENST00000409326 DDB2Q92466 427 aa16.11■□□□□ 0.17
PTCD3-202ENST00000409326 MOB3AQ96BX8 217 aa16.11■□□□□ 0.17
PTCD3-202ENST00000409326 RNF5Q99942 180 aa16.11■□□□□ 0.17
PTCD3-202ENST00000409326 RASL11BQ9BPW5 248 aa16.11■□□□□ 0.17
PTCD3-202ENST00000409326 ZNF107Q9UII5 783 aaPredicted RBP16.11■□□□□ 0.17
PTCD3-202ENST00000409326 LINC00473A8K010 186 aa16.1■□□□□ 0.17
PTCD3-202ENST00000409326 NDUFA3O95167 84 aa16.1■□□□□ 0.17
PTCD3-202ENST00000409326 CNTFRP26992 372 aa16.1■□□□□ 0.17
PTCD3-202ENST00000409326 EIF4EBP1Q13541 118 aaPredicted RBP16.1■□□□□ 0.17
PTCD3-202ENST00000409326 TMEM17Q86X19 198 aa16.1■□□□□ 0.17
PTCD3-202ENST00000409326 ZBTB34Q8NCN2 500 aa16.1■□□□□ 0.17
PTCD3-202ENST00000409326 OR6F1Q8NGZ6 308 aa16.1■□□□□ 0.17
PTCD3-202ENST00000409326 HSD17B10Q99714 261 aaKnown RBP16.1■□□□□ 0.17
PTCD3-202ENST00000409326 SLC5A7Q9GZV3 580 aa16.1■□□□□ 0.17
PTCD3-202ENST00000409326 CCL28Q9NRJ3 127 aa16.1■□□□□ 0.17
PTCD3-202ENST00000409326 GSTZ1O43708 216 aaPredicted RBP16.09■□□□□ 0.17
PTCD3-202ENST00000409326 CD3DP04234 171 aa16.09■□□□□ 0.17
PTCD3-202ENST00000409326 RRASP10301 218 aa16.09■□□□□ 0.17
PTCD3-202ENST00000409326 TAS2R19P59542 299 aa16.09■□□□□ 0.17
PTCD3-202ENST00000409326 TSPAN5P62079 268 aa16.09■□□□□ 0.17
PTCD3-202ENST00000409326 RTL8BQ17RB0 113 aa16.09■□□□□ 0.17
PTCD3-202ENST00000409326 RNASE10Q5GAN6 216 aaKnown RBP16.09■□□□□ 0.17
PTCD3-202ENST00000409326 SHISA2Q6UWI4 295 aa16.09■□□□□ 0.17
PTCD3-202ENST00000409326 KCTD9Q7L273 389 aa16.09■□□□□ 0.17
PTCD3-202ENST00000409326 CCDC190Q86UF4 302 aa16.09■□□□□ 0.17
PTCD3-202ENST00000409326 KLHDC1Q8N7A1 406 aa16.09■□□□□ 0.17
PTCD3-202ENST00000409326 TMEM229BQ8NBD8 167 aa16.09■□□□□ 0.17
PTCD3-202ENST00000409326 FLYWCH2Q96CP2 140 aaKnown RBP16.09■□□□□ 0.17
PTCD3-202ENST00000409326 WNT10AQ9GZT5 417 aa16.09■□□□□ 0.17
PTCD3-202ENST00000409326 FXYD6Q9H0Q3 95 aa16.09■□□□□ 0.17
PTCD3-202ENST00000409326 KIAA1456Q9P272 454 aa16.09■□□□□ 0.17
PTCD3-202ENST00000409326 V9GYH0 126 aa16.09■□□□□ 0.17
PTCD3-202ENST00000409326 A6NHS1 94 aa16.08■□□□□ 0.16
PTCD3-202ENST00000409326 M0QYG6 137 aa16.08■□□□□ 0.16
PTCD3-202ENST00000409326 PLXNB1O43157 2135 aa16.08■□□□□ 0.16
PTCD3-202ENST00000409326 IGHG2P01859 326 aa16.08■□□□□ 0.16
PTCD3-202ENST00000409326 CD74P04233 296 aa16.08■□□□□ 0.16
PTCD3-202ENST00000409326 KRTAP10-3P60369 221 aa16.08■□□□□ 0.16
PTCD3-202ENST00000409326 CBX3Q13185 183 aa16.08■□□□□ 0.16
PTCD3-202ENST00000409326 ZNF66Q6ZN08 573 aa16.08■□□□□ 0.16
PTCD3-202ENST00000409326 BVESQ8NE79 360 aa16.08■□□□□ 0.16
PTCD3-202ENST00000409326 OR6Q1Q8NGQ2 317 aa16.08■□□□□ 0.16
PTCD3-202ENST00000409326 BORCS5Q969J3 196 aa16.08■□□□□ 0.16
PTCD3-202ENST00000409326 TINAGL1Q9GZM7 467 aaPredicted RBP16.08■□□□□ 0.16
PTCD3-202ENST00000409326 PEX14O75381 377 aa16.07■□□□□ 0.16
PTCD3-202ENST00000409326 SPDEFO95238 335 aa16.07■□□□□ 0.16
PTCD3-202ENST00000409326 CSF1P09603 554 aa16.07■□□□□ 0.16
PTCD3-202ENST00000409326 VSIG10L2P0DP72 767 aa16.07■□□□□ 0.16
PTCD3-202ENST00000409326 PTBP1P26599 531 aaKnown RBP eCLIP16.07■□□□□ 0.16
PTCD3-202ENST00000409326 RPS16P62249 146 aaKnown RBP16.07■□□□□ 0.16
PTCD3-202ENST00000409326 RPL30P62888 115 aaKnown RBP16.07■□□□□ 0.16
PTCD3-202ENST00000409326 C5orf64Q2M2E5 130 aa16.07■□□□□ 0.16
PTCD3-202ENST00000409326 ZNF818PQ6ZRF7 136 aa16.07■□□□□ 0.16
PTCD3-202ENST00000409326 SLC35E3Q7Z769 313 aa16.07■□□□□ 0.16
PTCD3-202ENST00000409326 ARRDC1Q8N5I2 433 aa16.07■□□□□ 0.16
PTCD3-202ENST00000409326 TSNAXQ99598 290 aaKnown RBP16.07■□□□□ 0.16
PTCD3-202ENST00000409326 CITED1Q99966 193 aa16.07■□□□□ 0.16
PTCD3-202ENST00000409326 TAS2R8Q9NYW2 309 aa16.07■□□□□ 0.16
PTCD3-202ENST00000409326 PRELID3BQ9Y3B1 194 aa16.07■□□□□ 0.16
PTCD3-202ENST00000409326 RRHO14718 337 aa16.06■□□□□ 0.16
PTCD3-202ENST00000409326 IFNA6P05013 189 aa16.06■□□□□ 0.16
PTCD3-202ENST00000409326 GNRHRP30968 328 aa16.06■□□□□ 0.16
PTCD3-202ENST00000409326 ETV6P41212 452 aa16.06■□□□□ 0.16
PTCD3-202ENST00000409326 SRSF4Q08170 494 aaKnown RBP16.06■□□□□ 0.16
PTCD3-202ENST00000409326 TMEM177Q53S58 311 aa16.06■□□□□ 0.16
PTCD3-202ENST00000409326 SPANXN2Q5MJ10 180 aa16.06■□□□□ 0.16
Retrieved 100 of 20,778 RNA–protein pairs in 30.1 ms