RNA–Protein interactions for RNA: ENST00000399494.5

HMGB1-205, Transcript of high mobility group box 1, humanhuman

APPRIS P1 TSL 2 BASIC

Gene HMGB1, Length 1,282 nt, Biotype protein coding, Subcellular localisation Cytosol, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
HMGB1-205ENST00000399494 PLSCR3Q9NRY6 295 aa22.3■■□□□ 1.16
HMGB1-205ENST00000399494 SCOCQ9UIL1 159 aa22.3■■□□□ 1.16
HMGB1-205ENST00000399494 U3KQK5 164 aa22.3■■□□□ 1.16
HMGB1-205ENST00000399494 NOL3O60936 208 aaKnown RBP22.29■■□□□ 1.16
HMGB1-205ENST00000399494 CTXN2P0C2S0 81 aa22.29■■□□□ 1.16
HMGB1-205ENST00000399494 OR8U9P0C7N5 309 aa22.29■■□□□ 1.16
HMGB1-205ENST00000399494 CDX1P47902 265 aaPredicted RBP22.29■■□□□ 1.16
HMGB1-205ENST00000399494 LUMP51884 338 aaPredicted RBP22.29■■□□□ 1.16
HMGB1-205ENST00000399494 DEFB136Q30KP8 78 aa22.29■■□□□ 1.16
HMGB1-205ENST00000399494 MZT2AQ6P582 158 aa22.29■■□□□ 1.16
HMGB1-205ENST00000399494 RNF152Q8N8N0 203 aa22.29■■□□□ 1.16
HMGB1-205ENST00000399494 OR8U1Q8NH10 309 aa22.29■■□□□ 1.16
HMGB1-205ENST00000399494 ZNF251Q9BRH9 671 aa22.29■■□□□ 1.16
HMGB1-205ENST00000399494 GON7Q9BXV9 100 aa22.29■■□□□ 1.16
HMGB1-205ENST00000399494 RAB2BQ8WUD1 216 aa22.28■■□□□ 1.16
HMGB1-205ENST00000399494 OR2D2Q9H210 308 aa22.28■■□□□ 1.16
HMGB1-205ENST00000399494 ANXA10Q9UJ72 324 aa22.28■■□□□ 1.16
HMGB1-205ENST00000399494 SMIM31A0A1B0GVY4 71 aa22.27■■□□□ 1.16
HMGB1-205ENST00000399494 APOA1P02647 267 aa22.27■■□□□ 1.16
HMGB1-205ENST00000399494 EIF4EP06730 217 aaKnown RBP22.27■■□□□ 1.16
HMGB1-205ENST00000399494 PTHLHP12272 177 aa22.27■■□□□ 1.16
HMGB1-205ENST00000399494 ZNF182P17025 639 aaPredicted RBP22.27■■□□□ 1.16
HMGB1-205ENST00000399494 TAS2R20P59543 309 aa22.27■■□□□ 1.16
HMGB1-205ENST00000399494 ARPC4P59998 168 aa22.27■■□□□ 1.16
HMGB1-205ENST00000399494 FOXE3Q13461 319 aa22.27■■□□□ 1.16
HMGB1-205ENST00000399494 CXorf66Q5JRM2 361 aaPredicted RBP22.27■■□□□ 1.16
HMGB1-205ENST00000399494 CNIH2Q6PI25 160 aa22.27■■□□□ 1.16
HMGB1-205ENST00000399494 BEST4Q8NFU0 473 aa22.27■■□□□ 1.16
HMGB1-205ENST00000399494 OR8H1Q8NGG4 311 aa22.27■■□□□ 1.16
HMGB1-205ENST00000399494 OR5M8Q8NGP6 311 aa22.27■■□□□ 1.16
HMGB1-205ENST00000399494 RBMXL1Q96E39 390 aaKnown RBP22.27■■□□□ 1.16
HMGB1-205ENST00000399494 CMTM3Q96MX0 182 aa22.27■■□□□ 1.16
HMGB1-205ENST00000399494 ELANEP08246 267 aa22.26■■□□□ 1.15
HMGB1-205ENST00000399494 SOX6P35712 828 aa22.26■■□□□ 1.15
HMGB1-205ENST00000399494 CBX5P45973 191 aa22.26■■□□□ 1.15
HMGB1-205ENST00000399494 C9orf66Q5T8R8 295 aa22.26■■□□□ 1.15
HMGB1-205ENST00000399494 FAM131AQ6UXB0 335 aa22.26■■□□□ 1.15
HMGB1-205ENST00000399494 GLDNQ6ZMI3 551 aaPredicted RBP22.26■■□□□ 1.15
HMGB1-205ENST00000399494 H1FOOQ8IZA3 346 aaPredicted RBP22.26■■□□□ 1.15
HMGB1-205ENST00000399494 GVQW1Q8N7I0 195 aa22.26■■□□□ 1.15
HMGB1-205ENST00000399494 ZNF436-AS1Q8NC38 126 aaPredicted RBP22.26■■□□□ 1.15
HMGB1-205ENST00000399494 PRR25Q96S07 402 aa22.26■■□□□ 1.15
HMGB1-205ENST00000399494 RASL11BQ9BPW5 248 aa22.26■■□□□ 1.15
HMGB1-205ENST00000399494 IFT46Q9NQC8 304 aa22.26■■□□□ 1.15
HMGB1-205ENST00000399494 OR5H14A6NHG9 310 aa22.25■■□□□ 1.15
HMGB1-205ENST00000399494 H7C2Y5 167 aa22.25■■□□□ 1.15
HMGB1-205ENST00000399494 HPGDSO60760 199 aa22.25■■□□□ 1.15
HMGB1-205ENST00000399494 CT45A6P0DMU7 189 aa22.25■■□□□ 1.15
HMGB1-205ENST00000399494 CT45A5P0DMU8 189 aa22.25■■□□□ 1.15
HMGB1-205ENST00000399494 CT45A7P0DMV0 189 aa22.25■■□□□ 1.15
HMGB1-205ENST00000399494 TMBIM6P55061 237 aa22.25■■□□□ 1.15
HMGB1-205ENST00000399494 MMDQ15546 238 aa22.25■■□□□ 1.15
HMGB1-205ENST00000399494 BCL7BQ9BQE9 202 aa22.25■■□□□ 1.15
HMGB1-205ENST00000399494 MEIS3P1A6NDR6 274 aa22.24■■□□□ 1.15
HMGB1-205ENST00000399494 M0R1X1 148 aa22.24■■□□□ 1.15
HMGB1-205ENST00000399494 MC5RP33032 325 aa22.24■■□□□ 1.15
HMGB1-205ENST00000399494 ACTBP60709 375 aa22.24■■□□□ 1.15
HMGB1-205ENST00000399494 CFHR3Q02985 330 aa22.24■■□□□ 1.15
HMGB1-205ENST00000399494 SPCS2Q15005 226 aa22.24■■□□□ 1.15
HMGB1-205ENST00000399494 HOGA1Q86XE5 327 aa22.24■■□□□ 1.15
HMGB1-205ENST00000399494 FAM25AB3EWG3 89 aa22.23■■□□□ 1.15
HMGB1-205ENST00000399494 FAM25CB3EWG5 89 aa22.23■■□□□ 1.15
HMGB1-205ENST00000399494 FAM25GB3EWG6 89 aa22.23■■□□□ 1.15
HMGB1-205ENST00000399494 FCER2P06734 321 aa22.23■■□□□ 1.15
HMGB1-205ENST00000399494 F2RL1P55085 397 aa22.23■■□□□ 1.15
HMGB1-205ENST00000399494 DRAXINQ8NBI3 349 aaPredicted RBP22.23■■□□□ 1.15
HMGB1-205ENST00000399494 MRPS7Q9Y2R9 242 aaKnown RBP22.23■■□□□ 1.15
HMGB1-205ENST00000399494 WASHC3Q9Y3C0 194 aa22.23■■□□□ 1.15
HMGB1-205ENST00000399494 IGHG4P01861 327 aa22.22■■□□□ 1.15
HMGB1-205ENST00000399494 ELK1P19419 428 aa22.22■■□□□ 1.15
HMGB1-205ENST00000399494 NFYAP23511 347 aaPredicted RBP22.22■■□□□ 1.15
HMGB1-205ENST00000399494 ECI1P42126 302 aa22.22■■□□□ 1.15
HMGB1-205ENST00000399494 HSPB9Q9BQS6 159 aa22.22■■□□□ 1.15
HMGB1-205ENST00000399494 SDHAF2Q9NX18 166 aa22.22■■□□□ 1.15
HMGB1-205ENST00000399494 SEC14L6B5MCN3 397 aa22.21■■□□□ 1.15
HMGB1-205ENST00000399494 H0YJW9 148 aa22.21■■□□□ 1.15
HMGB1-205ENST00000399494 J3QRK9 145 aa22.21■■□□□ 1.15
HMGB1-205ENST00000399494 APOA2P02652 100 aa22.21■■□□□ 1.15
HMGB1-205ENST00000399494 PRSS3P35030 304 aa22.21■■□□□ 1.15
HMGB1-205ENST00000399494 FAM71E2Q8N5Q1 922 aa22.21■■□□□ 1.15
HMGB1-205ENST00000399494 KIAA1456Q9P272 454 aa22.21■■□□□ 1.15
HMGB1-205ENST00000399494 GAB2Q9UQC2 676 aa22.21■■□□□ 1.15
HMGB1-205ENST00000399494 OR2W1Q9Y3N9 320 aa22.21■■□□□ 1.15
HMGB1-205ENST00000399494 NBR2O15453 112 aa22.2■■□□□ 1.14
HMGB1-205ENST00000399494 PROP1O75360 226 aa22.2■■□□□ 1.14
HMGB1-205ENST00000399494 OR5AN1Q8NGI8 311 aa22.2■■□□□ 1.14
HMGB1-205ENST00000399494 C4orf3Q8WVX3 66 aa22.2■■□□□ 1.14
HMGB1-205ENST00000399494 ASCL2Q99929 193 aa22.2■■□□□ 1.14
HMGB1-205ENST00000399494 PSMB8P28062 276 aa22.19■■□□□ 1.14
HMGB1-205ENST00000399494 FHL3Q13643 280 aa22.19■■□□□ 1.14
HMGB1-205ENST00000399494 ZNF383Q8NA42 475 aa22.19■■□□□ 1.14
HMGB1-205ENST00000399494 RITA1Q96K30 269 aa22.19■■□□□ 1.14
HMGB1-205ENST00000399494 RGS5O15539 181 aa22.18■■□□□ 1.14
HMGB1-205ENST00000399494 RBBP9O75884 186 aa22.18■■□□□ 1.14
HMGB1-205ENST00000399494 IGF1P05019 195 aa22.18■■□□□ 1.14
HMGB1-205ENST00000399494 CNTFRP26992 372 aa22.18■■□□□ 1.14
HMGB1-205ENST00000399494 SNX29P2Q8IUI4 249 aa22.18■■□□□ 1.14
HMGB1-205ENST00000399494 ISOC1Q96CN7 298 aa22.18■■□□□ 1.14
HMGB1-205ENST00000399494 CCDC160A6NGH7 325 aa22.17■■□□□ 1.14
HMGB1-205ENST00000399494 VDAC1P21796 283 aa22.17■■□□□ 1.14
Retrieved 100 of 20,778 RNA–protein pairs in 46.2 ms