RNA–Protein interactions for RNA: ENST00000399489.5

HMGB1-204, Transcript of high mobility group box 1, humanhuman

TSL 1 (best) BASIC

Gene HMGB1, Length 1,727 nt, Biotype protein coding, Subcellular localisation Cytosol, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
HMGB1-204ENST00000399489 BCL9O00512 1426 aa3.04□□□□□ -1.92
HMGB1-204ENST00000399489 PIK3C2GO75747 1445 aa3.04□□□□□ -1.92
HMGB1-204ENST00000399489 OVOS2Q6IE36 1432 aa3.04□□□□□ -1.92
HMGB1-204ENST00000399489 NRXN1Q9ULB1 1477 aa3.03□□□□□ -1.92
HMGB1-204ENST00000399489 TMEM189A5PLL7 270 aa3.03□□□□□ -1.92
HMGB1-204ENST00000399489 NKX2-6A6NCS4 301 aa3.03□□□□□ -1.92
HMGB1-204ENST00000399489 F6UZH7 168 aa3.03□□□□□ -1.92
HMGB1-204ENST00000399489 K7EQS6 105 aa3.03□□□□□ -1.92
HMGB1-204ENST00000399489 UPK1AO00322 258 aa3.03□□□□□ -1.92
HMGB1-204ENST00000399489 PEX7O00628 323 aa3.03□□□□□ -1.92
HMGB1-204ENST00000399489 YIF1AO95070 293 aa3.03□□□□□ -1.92
HMGB1-204ENST00000399489 CDS2O95674 445 aa3.03□□□□□ -1.92
HMGB1-204ENST00000399489 CCNE2O96020 404 aa3.03□□□□□ -1.92
HMGB1-204ENST00000399489 DBIP07108 87 aaKnown RBP3.03□□□□□ -1.92
HMGB1-204ENST00000399489 C8GP07360 202 aa3.03□□□□□ -1.92
HMGB1-204ENST00000399489 CECR9P0C854 216 aa3.03□□□□□ -1.92
HMGB1-204ENST00000399489 FOLR2P14207 255 aa3.03□□□□□ -1.92
HMGB1-204ENST00000399489 APLNRP35414 380 aa3.03□□□□□ -1.92
HMGB1-204ENST00000399489 RPL34P49207 117 aaKnown RBP3.03□□□□□ -1.92
HMGB1-204ENST00000399489 TAF6P49848 677 aa3.03□□□□□ -1.92
HMGB1-204ENST00000399489 IFITM3Q01628 133 aa3.03□□□□□ -1.92
HMGB1-204ENST00000399489 ZNF876PQ49A33 203 aa3.03□□□□□ -1.92
HMGB1-204ENST00000399489 MESTQ5EB52 335 aa3.03□□□□□ -1.92
HMGB1-204ENST00000399489 CASC10Q5T4H9 136 aa3.03□□□□□ -1.92
HMGB1-204ENST00000399489 UMODL1-AS1Q8N2C9 162 aa3.03□□□□□ -1.92
HMGB1-204ENST00000399489 SLC25A45Q8N413 288 aa3.03□□□□□ -1.92
HMGB1-204ENST00000399489 ACY3Q96HD9 319 aa3.03□□□□□ -1.92
HMGB1-204ENST00000399489 LINC00477Q96M19 166 aa3.03□□□□□ -1.92
HMGB1-204ENST00000399489 CCDC115Q96NT0 180 aa3.03□□□□□ -1.92
HMGB1-204ENST00000399489 SMIM14Q96QK8 99 aa3.03□□□□□ -1.92
HMGB1-204ENST00000399489 OR52E6Q96RD3 313 aa3.03□□□□□ -1.92
HMGB1-204ENST00000399489 EBPLQ9BY08 206 aa3.03□□□□□ -1.92
HMGB1-204ENST00000399489 ZNF702PQ9H963 129 aa3.03□□□□□ -1.92
HMGB1-204ENST00000399489 LYRM2Q9NU23 88 aaPredicted RBP3.03□□□□□ -1.92
HMGB1-204ENST00000399489 MED29Q9NX70 200 aa3.03□□□□□ -1.92
HMGB1-204ENST00000399489 BAIAP2Q9UQB8 552 aa3.03□□□□□ -1.92
HMGB1-204ENST00000399489 ZNF609O15014 1411 aa3.03□□□□□ -1.92
HMGB1-204ENST00000399489 DLC1Q96QB1 1528 aa3.03□□□□□ -1.92
HMGB1-204ENST00000399489 ABCA3Q99758 1704 aa3.03□□□□□ -1.92
HMGB1-204ENST00000399489 IGLV8-61A0A075B6I0 122 aa3.02□□□□□ -1.93
HMGB1-204ENST00000399489 IGKV1-27A0A075B6S5 117 aa3.02□□□□□ -1.93
HMGB1-204ENST00000399489 MEIKINA0A087WXM9 373 aa3.02□□□□□ -1.93
HMGB1-204ENST00000399489 A0A0G2JN53 185 aa3.02□□□□□ -1.93
HMGB1-204ENST00000399489 A0A1B0GV50 99 aa3.02□□□□□ -1.93
HMGB1-204ENST00000399489 KRTAP4-16G5E9R7 235 aaPredicted RBP3.02□□□□□ -1.93
HMGB1-204ENST00000399489 H3BSA7 217 aa3.02□□□□□ -1.93
HMGB1-204ENST00000399489 IFNA17P01571 189 aa3.02□□□□□ -1.93
HMGB1-204ENST00000399489 FABP3P05413 133 aa3.02□□□□□ -1.93
HMGB1-204ENST00000399489 PFN1P07737 140 aaKnown RBP3.02□□□□□ -1.93
HMGB1-204ENST00000399489 OR4A8P0C604 315 aa3.02□□□□□ -1.93
HMGB1-204ENST00000399489 ZNF30P17039 623 aa3.02□□□□□ -1.93
HMGB1-204ENST00000399489 EVX1P49640 407 aa3.02□□□□□ -1.93
HMGB1-204ENST00000399489 UBE2NP61088 152 aaKnown RBP3.02□□□□□ -1.93
HMGB1-204ENST00000399489 DAD1P61803 113 aa3.02□□□□□ -1.93
HMGB1-204ENST00000399489 PPP3R1P63098 170 aa3.02□□□□□ -1.93
HMGB1-204ENST00000399489 PAX8Q06710 450 aa3.02□□□□□ -1.93
HMGB1-204ENST00000399489 PNOCQ13519 176 aa3.02□□□□□ -1.93
HMGB1-204ENST00000399489 JOSD1Q15040 202 aaPredicted RBP3.02□□□□□ -1.93
HMGB1-204ENST00000399489 ATP6AP1LQ52LC2 224 aa3.02□□□□□ -1.93
HMGB1-204ENST00000399489 OCIAD2Q56VL3 154 aa3.02□□□□□ -1.93
HMGB1-204ENST00000399489 C1orf194Q5T5A4 169 aa3.02□□□□□ -1.93
HMGB1-204ENST00000399489 ZNF550Q7Z398 422 aa3.02□□□□□ -1.93
HMGB1-204ENST00000399489 HSD17B13Q7Z5P4 300 aaPredicted RBP3.02□□□□□ -1.93
HMGB1-204ENST00000399489 ZIC4Q8N9L1 334 aa3.02□□□□□ -1.93
HMGB1-204ENST00000399489 SLC30A7Q8NEW0 376 aa3.02□□□□□ -1.93
HMGB1-204ENST00000399489 TSTD1Q8NFU3 115 aa3.02□□□□□ -1.93
HMGB1-204ENST00000399489 OR4M1Q8NGD0 313 aa3.02□□□□□ -1.93
HMGB1-204ENST00000399489 OR52L1Q8NGH7 329 aa3.02□□□□□ -1.93
HMGB1-204ENST00000399489 OR5H6Q8NGV6 325 aa3.02□□□□□ -1.93
HMGB1-204ENST00000399489 TERB2Q8NHR7 220 aa3.02□□□□□ -1.93
HMGB1-204ENST00000399489 SFT2D1Q8WV19 159 aa3.02□□□□□ -1.93
HMGB1-204ENST00000399489 MBD3L1Q8WWY6 194 aa3.02□□□□□ -1.93
HMGB1-204ENST00000399489 ACOT12Q8WYK0 555 aa3.02□□□□□ -1.93
HMGB1-204ENST00000399489 VSIG2Q96IQ7 327 aa3.02□□□□□ -1.93
HMGB1-204ENST00000399489 OR4K3Q96R72 315 aa3.02□□□□□ -1.93
HMGB1-204ENST00000399489 ZNF649Q9BS31 505 aa3.02□□□□□ -1.93
HMGB1-204ENST00000399489 TMEM243Q9BU79 118 aa3.02□□□□□ -1.93
HMGB1-204ENST00000399489 PBDC1Q9BVG4 233 aa3.02□□□□□ -1.93
HMGB1-204ENST00000399489 SLC25A2Q9BXI2 301 aa3.02□□□□□ -1.93
HMGB1-204ENST00000399489 FGF22Q9HCT0 170 aa3.02□□□□□ -1.93
HMGB1-204ENST00000399489 UBQLN4Q9NRR5 601 aa3.02□□□□□ -1.93
HMGB1-204ENST00000399489 DHCR7Q9UBM7 475 aaKnown RBP3.02□□□□□ -1.93
HMGB1-204ENST00000399489 PRNDQ9UKY0 176 aa3.02□□□□□ -1.93
HMGB1-204ENST00000399489 PKIGQ9Y2B9 76 aa3.02□□□□□ -1.93
HMGB1-204ENST00000399489 HDGFL3Q9Y3E1 203 aa3.02□□□□□ -1.93
HMGB1-204ENST00000399489 HEBP2Q9Y5Z4 205 aa3.02□□□□□ -1.93
HMGB1-204ENST00000399489 U3KQ87 197 aa3.02□□□□□ -1.93
HMGB1-204ENST00000399489 IGSF9BQ9UPX0 1349 aa3.02□□□□□ -1.93
HMGB1-204ENST00000399489 MYH15Q9Y2K3 1946 aa3.02□□□□□ -1.93
HMGB1-204ENST00000399489 A0A087WX48 190 aa3.02□□□□□ -1.93
HMGB1-204ENST00000399489 TRAV8-3A0A0A6YYJ7 113 aa3.02□□□□□ -1.93
HMGB1-204ENST00000399489 PLAC8L1A1L4L8 177 aa3.02□□□□□ -1.93
HMGB1-204ENST00000399489 MYBPHLA2RUH7 354 aa3.02□□□□□ -1.93
HMGB1-204ENST00000399489 TRAPPC13A5PLN9 417 aa3.02□□□□□ -1.93
HMGB1-204ENST00000399489 PGPA6NDG6 321 aa3.02□□□□□ -1.93
HMGB1-204ENST00000399489 D6RAR5 112 aa3.02□□□□□ -1.93
HMGB1-204ENST00000399489 SOCS3O14543 225 aa3.02□□□□□ -1.93
HMGB1-204ENST00000399489 OR2A4O95047 310 aa3.02□□□□□ -1.93
HMGB1-204ENST00000399489 KCNK2O95069 426 aa3.02□□□□□ -1.93
HMGB1-204ENST00000399489 CDRT1O95170 752 aa3.02□□□□□ -1.93
Retrieved 100 of 20,778 RNA–protein pairs in 30.2 ms