RNA–Protein interactions for RNA: ENST00000395684.5

SHMT1-205, Transcript of serine hydroxymethyltransferase 1, humanhuman

TSL 1 (best)

Gene SHMT1, Length 2,652 nt, Biotype retained intron, Subcellular localisation Cytosol, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SHMT1-205ENST00000395684 WNT9BO14905 357 aa10.64□□□□□ -0.71
SHMT1-205ENST00000395684 GALR2O43603 387 aaPredicted RBP10.64□□□□□ -0.71
SHMT1-205ENST00000395684 TFF1P04155 84 aa10.64□□□□□ -0.71
SHMT1-205ENST00000395684 PAX1P15863 534 aa10.64□□□□□ -0.71
SHMT1-205ENST00000395684 MEOX1P50221 254 aa10.64□□□□□ -0.71
SHMT1-205ENST00000395684 AESQ08117 197 aa10.64□□□□□ -0.71
SHMT1-205ENST00000395684 PRSS8Q16651 343 aa10.64□□□□□ -0.71
SHMT1-205ENST00000395684 COA6Q5JTJ3 125 aaKnown RBP10.64□□□□□ -0.71
SHMT1-205ENST00000395684 UBALD2Q8IYN6 164 aa10.64□□□□□ -0.71
SHMT1-205ENST00000395684 ZBTB34Q8NCN2 500 aa10.64□□□□□ -0.71
SHMT1-205ENST00000395684 NANOS1Q8WY41 292 aaKnown RBP10.64□□□□□ -0.71
SHMT1-205ENST00000395684 OR5B12Q96R08 314 aa10.64□□□□□ -0.71
SHMT1-205ENST00000395684 ZPBPQ9BS86 351 aa10.64□□□□□ -0.71
SHMT1-205ENST00000395684 ACTR3CQ9C0K3 210 aaPredicted RBP10.64□□□□□ -0.71
SHMT1-205ENST00000395684 CACNA1DQ01668 2161 aa10.64□□□□□ -0.71
SHMT1-205ENST00000395684 MED13Q9UHV7 2174 aa10.64□□□□□ -0.71
SHMT1-205ENST00000395684 A0A1B0GV90 55 aa10.64□□□□□ -0.71
SHMT1-205ENST00000395684 HRASP01112 189 aa10.64□□□□□ -0.71
SHMT1-205ENST00000395684 MBP02144 154 aa10.64□□□□□ -0.71
SHMT1-205ENST00000395684 PSG7Q13046 419 aa10.64□□□□□ -0.71
SHMT1-205ENST00000395684 Q6ZR03 302 aa10.64□□□□□ -0.71
SHMT1-205ENST00000395684 ZNF826PQ6ZT77 177 aa10.64□□□□□ -0.71
SHMT1-205ENST00000395684 CXorf67Q86X51 503 aaPredicted RBP10.64□□□□□ -0.71
SHMT1-205ENST00000395684 MRPL37Q9BZE1 423 aaKnown RBP10.64□□□□□ -0.71
SHMT1-205ENST00000395684 MANBALQ9NQG1 85 aa10.64□□□□□ -0.71
SHMT1-205ENST00000395684 TMEM30CPA0ZSE6 113 aa10.63□□□□□ -0.71
SHMT1-205ENST00000395684 C1QTNF9BB2RNN3 333 aa10.63□□□□□ -0.71
SHMT1-205ENST00000395684 HBZP02008 142 aa10.63□□□□□ -0.71
SHMT1-205ENST00000395684 GYPAP02724 150 aa10.63□□□□□ -0.71
SHMT1-205ENST00000395684 RAC2P15153 192 aa10.63□□□□□ -0.71
SHMT1-205ENST00000395684 COX5AP20674 150 aa10.63□□□□□ -0.71
SHMT1-205ENST00000395684 IDH3GP51553 393 aaPredicted RBP10.63□□□□□ -0.71
SHMT1-205ENST00000395684 NUBP1P53384 320 aa10.63□□□□□ -0.71
SHMT1-205ENST00000395684 SLC25A40Q8TBP6 338 aa10.63□□□□□ -0.71
SHMT1-205ENST00000395684 TMEM37Q8WXS4 190 aa10.63□□□□□ -0.71
SHMT1-205ENST00000395684 DEFB127Q9H1M4 99 aa10.63□□□□□ -0.71
SHMT1-205ENST00000395684 ABI3Q9P2A4 366 aa10.63□□□□□ -0.71
SHMT1-205ENST00000395684 LAMTOR5O43504 91 aa10.63□□□□□ -0.71
SHMT1-205ENST00000395684 SP1P08047 785 aa10.63□□□□□ -0.71
SHMT1-205ENST00000395684 FAM3BP58499 235 aaPredicted RBP10.63□□□□□ -0.71
SHMT1-205ENST00000395684 VWC2Q2TAL6 325 aa10.63□□□□□ -0.71
SHMT1-205ENST00000395684 SSX9Q7RTT3 188 aa10.63□□□□□ -0.71
SHMT1-205ENST00000395684 TMEM170AQ8WVE7 144 aa10.63□□□□□ -0.71
SHMT1-205ENST00000395684 HES4Q9HCC6 221 aa10.63□□□□□ -0.71
SHMT1-205ENST00000395684 URB1O60287 2271 aaKnown RBP10.63□□□□□ -0.71
SHMT1-205ENST00000395684 LINC00473A8K010 186 aa10.62□□□□□ -0.71
SHMT1-205ENST00000395684 SLC10A1Q14973 349 aa10.62□□□□□ -0.71
SHMT1-205ENST00000395684 C11orf53Q8IXP5 236 aa10.62□□□□□ -0.71
SHMT1-205ENST00000395684 ZNF664Q8N3J9 261 aa10.62□□□□□ -0.71
SHMT1-205ENST00000395684 Q8N7P7 452 aa10.62□□□□□ -0.71
SHMT1-205ENST00000395684 OR5T1Q8NG75 326 aa10.62□□□□□ -0.71
SHMT1-205ENST00000395684 MRGPRDQ8TDS7 321 aa10.62□□□□□ -0.71
SHMT1-205ENST00000395684 ANAPC16Q96DE5 110 aa10.62□□□□□ -0.71
SHMT1-205ENST00000395684 COQ2Q96H96 371 aa10.62□□□□□ -0.71
SHMT1-205ENST00000395684 DDA1Q9BW61 102 aa10.62□□□□□ -0.71
SHMT1-205ENST00000395684 FUT9Q9Y231 359 aa10.62□□□□□ -0.71
SHMT1-205ENST00000395684 GGCTO75223 188 aaKnown RBP10.62□□□□□ -0.71
SHMT1-205ENST00000395684 CLDN14O95500 239 aa10.62□□□□□ -0.71
SHMT1-205ENST00000395684 IFNA10P01566 189 aa10.62□□□□□ -0.71
SHMT1-205ENST00000395684 RNF224P0DH78 156 aa10.62□□□□□ -0.71
SHMT1-205ENST00000395684 EGR1P18146 543 aa10.62□□□□□ -0.71
SHMT1-205ENST00000395684 PDLIM4P50479 330 aa10.62□□□□□ -0.71
SHMT1-205ENST00000395684 CATR1Q13166 79 aa10.62□□□□□ -0.71
SHMT1-205ENST00000395684 GCSAMLQ5JQS6 135 aa10.62□□□□□ -0.71
SHMT1-205ENST00000395684 ACTL10Q5JWF8 245 aa10.62□□□□□ -0.71
SHMT1-205ENST00000395684 TPRX1Q8N7U7 411 aa10.62□□□□□ -0.71
SHMT1-205ENST00000395684 OR2T10Q8NGZ9 312 aa10.62□□□□□ -0.71
SHMT1-205ENST00000395684 NEIL1Q96FI4 390 aaPredicted RBP10.62□□□□□ -0.71
SHMT1-205ENST00000395684 OOEPA6NGQ2 149 aa10.61□□□□□ -0.71
SHMT1-205ENST00000395684 C11orf94C9JXX5 98 aa10.61□□□□□ -0.71
SHMT1-205ENST00000395684 RAB29O14966 203 aa10.61□□□□□ -0.71
SHMT1-205ENST00000395684 RBMXL2O75526 392 aaKnown RBP10.61□□□□□ -0.71
SHMT1-205ENST00000395684 FOSL1P15407 271 aa10.61□□□□□ -0.71
SHMT1-205ENST00000395684 BMP5P22003 454 aa10.61□□□□□ -0.71
SHMT1-205ENST00000395684 MPV17P39210 176 aa10.61□□□□□ -0.71
SHMT1-205ENST00000395684 GNB2P62879 340 aa10.61□□□□□ -0.71
SHMT1-205ENST00000395684 SLC35E4Q6ICL7 350 aa10.61□□□□□ -0.71
SHMT1-205ENST00000395684 H2BFWTQ7Z2G1 175 aa10.61□□□□□ -0.71
SHMT1-205ENST00000395684 ZNF709Q8N972 641 aa10.61□□□□□ -0.71
SHMT1-205ENST00000395684 AURKAIP1Q9NWT8 199 aaPredicted RBP10.61□□□□□ -0.71
SHMT1-205ENST00000395684 SPRR3Q9UBC9 169 aa10.61□□□□□ -0.71
SHMT1-205ENST00000395684 NBEAQ8NFP9 2946 aa10.61□□□□□ -0.71
SHMT1-205ENST00000395684 IGHV3-43A0A0B4J1X8 118 aa10.61□□□□□ -0.71
SHMT1-205ENST00000395684 IQCF6A8MYZ5 107 aa10.61□□□□□ -0.71
SHMT1-205ENST00000395684 MKRN2OSH3BPM6 223 aa10.61□□□□□ -0.71
SHMT1-205ENST00000395684 J3QW42 95 aa10.61□□□□□ -0.71
SHMT1-205ENST00000395684 MLNRO43193 412 aa10.61□□□□□ -0.71
SHMT1-205ENST00000395684 IGHV3-43DP0DP04 118 aa10.61□□□□□ -0.71
SHMT1-205ENST00000395684 SSTR5P35346 364 aa10.61□□□□□ -0.71
SHMT1-205ENST00000395684 CHRNA7P36544 502 aa10.61□□□□□ -0.71
SHMT1-205ENST00000395684 RNFT1Q5M7Z0 435 aa10.61□□□□□ -0.71
SHMT1-205ENST00000395684 ACY3Q96HD9 319 aa10.61□□□□□ -0.71
SHMT1-205ENST00000395684 OR6C3Q9NZP0 311 aa10.61□□□□□ -0.71
SHMT1-205ENST00000395684 IL17BQ9UHF5 180 aa10.61□□□□□ -0.71
SHMT1-205ENST00000395684 A8MWP6 167 aa10.61□□□□□ -0.71
SHMT1-205ENST00000395684 CRYAAP02489 173 aa10.61□□□□□ -0.71
SHMT1-205ENST00000395684 GABRA2P47869 451 aa10.61□□□□□ -0.71
SHMT1-205ENST00000395684 MRPL49Q13405 166 aaKnown RBP10.61□□□□□ -0.71
SHMT1-205ENST00000395684 MDS2Q8NDY4 140 aa10.61□□□□□ -0.71
SHMT1-205ENST00000395684 RFESDQ8TAC1 157 aa10.61□□□□□ -0.71
Retrieved 100 of 20,778 RNA–protein pairs in 33.9 ms