RNA–Protein interactions for RNA: ENST00000392004.7

COL6A3-205, Transcript of collagen type VI alpha 3 chain, humanhuman

TSL 1 (best) BASIC

Gene COL6A3, Length 4,037 nt, Biotype protein coding, Subcellular localisation Endoplasmic reticulum .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
COL6A3-205ENST00000392004 ODAMA1E959 279 aa8.66□□□□□ -1.02
COL6A3-205ENST00000392004 GPR37O15354 613 aa8.66□□□□□ -1.02
COL6A3-205ENST00000392004 CLN5O75503 358 aa8.66□□□□□ -1.02
COL6A3-205ENST00000392004 IGKV3-15P01624 115 aa8.66□□□□□ -1.02
COL6A3-205ENST00000392004 FBP1P09467 338 aa8.66□□□□□ -1.02
COL6A3-205ENST00000392004 RPL12P30050 165 aaKnown RBP8.66□□□□□ -1.02
COL6A3-205ENST00000392004 SSTP61278 116 aa8.66□□□□□ -1.02
COL6A3-205ENST00000392004 FGF12P61328 243 aa8.66□□□□□ -1.02
COL6A3-205ENST00000392004 C1orf100Q5SVJ3 147 aa8.66□□□□□ -1.02
COL6A3-205ENST00000392004 TMEM268Q5VZI3 342 aa8.66□□□□□ -1.02
COL6A3-205ENST00000392004 OR8G2PQ6IF36 304 aa8.66□□□□□ -1.02
COL6A3-205ENST00000392004 HPSE2Q8WWQ2 592 aa8.66□□□□□ -1.02
COL6A3-205ENST00000392004 UMAD1C9J7I0 102 aa8.66□□□□□ -1.02
COL6A3-205ENST00000392004 MPZP25189 248 aa8.66□□□□□ -1.02
COL6A3-205ENST00000392004 RPL11P62913 178 aaKnown RBP8.66□□□□□ -1.02
COL6A3-205ENST00000392004 CLEC18BQ6UXF7 455 aa8.66□□□□□ -1.02
COL6A3-205ENST00000392004 SSX8Q7RTT4 187 aa8.66□□□□□ -1.02
COL6A3-205ENST00000392004 H2BFWTQ7Z2G1 175 aa8.66□□□□□ -1.02
COL6A3-205ENST00000392004 HOGA1Q86XE5 327 aa8.66□□□□□ -1.02
COL6A3-205ENST00000392004 ZNF714Q96N38 554 aa8.66□□□□□ -1.02
COL6A3-205ENST00000392004 PLEKHF2Q9H8W4 249 aa8.66□□□□□ -1.02
COL6A3-205ENST00000392004 PNRC2Q9NPJ4 139 aaKnown RBP8.66□□□□□ -1.02
COL6A3-205ENST00000392004 CCL28Q9NRJ3 127 aa8.66□□□□□ -1.02
COL6A3-205ENST00000392004 CACFD1Q9UGQ2 172 aa8.66□□□□□ -1.02
COL6A3-205ENST00000392004 METRNQ9UJH8 293 aa8.66□□□□□ -1.02
COL6A3-205ENST00000392004 KIAA1549Q9HCM3 1950 aa8.66□□□□□ -1.02
COL6A3-205ENST00000392004 FLNCQ14315 2725 aa8.66□□□□□ -1.02
COL6A3-205ENST00000392004 HBZP02008 142 aa8.66□□□□□ -1.02
COL6A3-205ENST00000392004 CD5P06127 495 aa8.66□□□□□ -1.02
COL6A3-205ENST00000392004 AGAP20933 346 aa8.66□□□□□ -1.02
COL6A3-205ENST00000392004 RHEBQ15382 184 aa8.66□□□□□ -1.02
COL6A3-205ENST00000392004 GUK1Q16774 197 aa8.66□□□□□ -1.02
COL6A3-205ENST00000392004 ZNF529Q6P280 563 aa8.66□□□□□ -1.02
COL6A3-205ENST00000392004 WDR82Q6UXN9 313 aa8.66□□□□□ -1.02
COL6A3-205ENST00000392004 BRD3OSQ6XYD6 125 aa8.66□□□□□ -1.02
COL6A3-205ENST00000392004 ARRDC1Q8N5I2 433 aa8.66□□□□□ -1.02
COL6A3-205ENST00000392004 COMMD1Q8N668 190 aa8.66□□□□□ -1.02
COL6A3-205ENST00000392004 NEIL1Q96FI4 390 aaPredicted RBP8.66□□□□□ -1.02
COL6A3-205ENST00000392004 SEBOXQ9HB31 216 aaPredicted RBP8.66□□□□□ -1.02
COL6A3-205ENST00000392004 GCM1Q9NP62 436 aa8.66□□□□□ -1.02
COL6A3-205ENST00000392004 PLSCR2Q9NRY7 297 aa8.66□□□□□ -1.02
COL6A3-205ENST00000392004 CEACAM18A8MTB9 384 aa8.65□□□□□ -1.02
COL6A3-205ENST00000392004 MGST3O14880 152 aa8.65□□□□□ -1.02
COL6A3-205ENST00000392004 MLNRO43193 412 aa8.65□□□□□ -1.02
COL6A3-205ENST00000392004 ISG15P05161 165 aa8.65□□□□□ -1.02
COL6A3-205ENST00000392004 COX5AP20674 150 aa8.65□□□□□ -1.02
COL6A3-205ENST00000392004 CCKARP32238 428 aa8.65□□□□□ -1.02
COL6A3-205ENST00000392004 MDH2P40926 338 aaKnown RBP8.65□□□□□ -1.02
COL6A3-205ENST00000392004 HIST3H3Q16695 136 aa8.65□□□□□ -1.02
COL6A3-205ENST00000392004 IAH1Q2TAA2 248 aaPredicted RBP8.65□□□□□ -1.02
COL6A3-205ENST00000392004 IL17RELQ6ZVW7 336 aa8.65□□□□□ -1.02
COL6A3-205ENST00000392004 HIST2H3AQ71DI3 136 aa8.65□□□□□ -1.02
COL6A3-205ENST00000392004 DMRT1Q9Y5R6 373 aa8.65□□□□□ -1.02
COL6A3-205ENST00000392004 IFNA2P01563 188 aa8.65□□□□□ -1.02
COL6A3-205ENST00000392004 ANOS1P23352 680 aa8.65□□□□□ -1.02
COL6A3-205ENST00000392004 NDUFA6P56556 154 aa8.65□□□□□ -1.02
COL6A3-205ENST00000392004 Q5PR19 223 aa8.65□□□□□ -1.02
COL6A3-205ENST00000392004 BTNL8Q6UX41 500 aa8.65□□□□□ -1.02
COL6A3-205ENST00000392004 TGIF2LXQ8IUE1 241 aa8.65□□□□□ -1.02
COL6A3-205ENST00000392004 LURAP1Q96LR2 239 aa8.65□□□□□ -1.02
COL6A3-205ENST00000392004 Q96MF0 132 aa8.65□□□□□ -1.02
COL6A3-205ENST00000392004 IGHV3-21A0A0B4J1V1 117 aa8.65□□□□□ -1.03
COL6A3-205ENST00000392004 IAPPP10997 89 aa8.65□□□□□ -1.03
COL6A3-205ENST00000392004 IGFBP3P17936 291 aaPredicted RBP8.65□□□□□ -1.03
COL6A3-205ENST00000392004 MIDNQ504T8 468 aa8.65□□□□□ -1.03
COL6A3-205ENST00000392004 FAM90A1Q86YD7 464 aa8.65□□□□□ -1.03
COL6A3-205ENST00000392004 COMMD5Q9GZQ3 224 aa8.65□□□□□ -1.03
COL6A3-205ENST00000392004 KALRNO60229 2985 aa8.65□□□□□ -1.03
COL6A3-205ENST00000392004 ZNF729A6NN14 1252 aaPredicted RBP8.64□□□□□ -1.03
COL6A3-205ENST00000392004 IQCF6A8MYZ5 107 aa8.64□□□□□ -1.03
COL6A3-205ENST00000392004 OR2C1O95371 312 aa8.64□□□□□ -1.03
COL6A3-205ENST00000392004 FCGR3AP08637 254 aa8.64□□□□□ -1.03
COL6A3-205ENST00000392004 AADACP22760 399 aa8.64□□□□□ -1.03
COL6A3-205ENST00000392004 CHATP28329 748 aa8.64□□□□□ -1.03
COL6A3-205ENST00000392004 MMDQ15546 238 aa8.64□□□□□ -1.03
COL6A3-205ENST00000392004 NRN1LQ496H8 165 aa8.64□□□□□ -1.03
COL6A3-205ENST00000392004 FGFRL1Q8N441 504 aa8.64□□□□□ -1.03
COL6A3-205ENST00000392004 SSBP3Q9BWW4 388 aaPredicted RBP8.64□□□□□ -1.03
COL6A3-205ENST00000392004 ANXA10Q9UJ72 324 aa8.64□□□□□ -1.03
COL6A3-205ENST00000392004 PUS1Q9Y606 427 aaKnown RBP eCLIP8.64□□□□□ -1.03
COL6A3-205ENST00000392004 LDLRAD4O15165 306 aa8.64□□□□□ -1.03
COL6A3-205ENST00000392004 NDUFS6O75380 124 aaKnown RBP8.64□□□□□ -1.03
COL6A3-205ENST00000392004 EGR1P18146 543 aa8.64□□□□□ -1.03
COL6A3-205ENST00000392004 GZMHP20718 246 aa8.64□□□□□ -1.03
COL6A3-205ENST00000392004 FPR2P25090 351 aa8.64□□□□□ -1.03
COL6A3-205ENST00000392004 CLINT1Q14677 625 aa8.64□□□□□ -1.03
COL6A3-205ENST00000392004 LYPD2Q6UXB3 125 aa8.64□□□□□ -1.03
COL6A3-205ENST00000392004 RTN4RL2Q86UN3 420 aa8.64□□□□□ -1.03
COL6A3-205ENST00000392004 TMUB1Q9BVT8 246 aa8.64□□□□□ -1.03
COL6A3-205ENST00000392004 TUBA4BQ9H853 241 aa8.64□□□□□ -1.03
COL6A3-205ENST00000392004 OR1A1Q9P1Q5 309 aa8.64□□□□□ -1.03
COL6A3-205ENST00000392004 FBXL17Q9UF56 701 aa8.64□□□□□ -1.03
COL6A3-205ENST00000392004 GPR132Q9UNW8 380 aa8.64□□□□□ -1.03
COL6A3-205ENST00000392004 MAST4O15021 2626 aa8.64□□□□□ -1.03
COL6A3-205ENST00000392004 DBX1A6NMT0 343 aa8.64□□□□□ -1.03
COL6A3-205ENST00000392004 IGHV2-70P01814 119 aa8.64□□□□□ -1.03
COL6A3-205ENST00000392004 CD37P11049 281 aa8.64□□□□□ -1.03
COL6A3-205ENST00000392004 SULT1A1P50225 295 aa8.64□□□□□ -1.03
COL6A3-205ENST00000392004 PRRX1P54821 245 aa8.64□□□□□ -1.03
COL6A3-205ENST00000392004 ZNF674Q2M3X9 581 aa8.64□□□□□ -1.03
Retrieved 100 of 20,778 RNA–protein pairs in 34.8 ms