RNA–Protein interactions for RNA: ENST00000378839.1

CCDC3-202, Transcript of coiled-coil domain containing 3, humanhuman

APPRIS ALT2 TSL 2 BASIC

Gene CCDC3, Length 3,180 nt, Biotype protein coding.

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CCDC3-202ENST00000378839 M0R1B8 84 aa11.13□□□□□ -0.63
CCDC3-202ENST00000378839 FOLR2P14207 255 aa11.13□□□□□ -0.63
CCDC3-202ENST00000378839 TMEM14EPQ6UXP3 125 aa11.13□□□□□ -0.63
CCDC3-202ENST00000378839 ZNF383Q8NA42 475 aa11.13□□□□□ -0.63
CCDC3-202ENST00000378839 ZNRF1Q8ND25 227 aa11.13□□□□□ -0.63
CCDC3-202ENST00000378839 HIPK2Q9H2X6 1198 aa11.13□□□□□ -0.63
CCDC3-202ENST00000378839 ADGRG4Q8IZF6 3080 aa11.13□□□□□ -0.63
CCDC3-202ENST00000378839 IFNL4K9M1U5 179 aa11.13□□□□□ -0.63
CCDC3-202ENST00000378839 DFFBO76075 338 aa11.13□□□□□ -0.63
CCDC3-202ENST00000378839 GPX4P36969 197 aaPredicted RBP11.13□□□□□ -0.63
CCDC3-202ENST00000378839 RPS10P46783 165 aaKnown RBP11.13□□□□□ -0.63
CCDC3-202ENST00000378839 ZNF134P52741 427 aa11.13□□□□□ -0.63
CCDC3-202ENST00000378839 SMIM21Q3B7S5 101 aa11.13□□□□□ -0.63
CCDC3-202ENST00000378839 SOHLH1Q5JUK2 328 aa11.13□□□□□ -0.63
CCDC3-202ENST00000378839 ZNF506Q5JVG8 444 aa11.13□□□□□ -0.63
CCDC3-202ENST00000378839 IGFL3Q6UXB1 125 aa11.13□□□□□ -0.63
CCDC3-202ENST00000378839 TCTEX1D2Q8WW35 142 aa11.13□□□□□ -0.63
CCDC3-202ENST00000378839 SRRM5B3KS81 715 aa11.12□□□□□ -0.63
CCDC3-202ENST00000378839 RAB2AP61019 212 aa11.12□□□□□ -0.63
CCDC3-202ENST00000378839 RPS23P62266 143 aaKnown RBP11.12□□□□□ -0.63
CCDC3-202ENST00000378839 Q3ZCU0 254 aa11.12□□□□□ -0.63
CCDC3-202ENST00000378839 NCR3LG1Q68D85 454 aa11.12□□□□□ -0.63
CCDC3-202ENST00000378839 OR8G2PQ6IF36 304 aa11.12□□□□□ -0.63
CCDC3-202ENST00000378839 VHLLQ6RSH7 139 aa11.12□□□□□ -0.63
CCDC3-202ENST00000378839 TGIF2LYQ8IUE0 185 aa11.12□□□□□ -0.63
CCDC3-202ENST00000378839 Q8TCH9 128 aa11.12□□□□□ -0.63
CCDC3-202ENST00000378839 LURAP1Q96LR2 239 aa11.12□□□□□ -0.63
CCDC3-202ENST00000378839 WDR61Q9GZS3 305 aaKnown RBP11.12□□□□□ -0.63
CCDC3-202ENST00000378839 ZNF665Q9H7R5 613 aa11.12□□□□□ -0.63
CCDC3-202ENST00000378839 LRRC30A6NM36 301 aa11.12□□□□□ -0.63
CCDC3-202ENST00000378839 H3BQ15 152 aa11.12□□□□□ -0.63
CCDC3-202ENST00000378839 ZG16O60844 167 aa11.12□□□□□ -0.63
CCDC3-202ENST00000378839 NDUFB7P17568 137 aa11.12□□□□□ -0.63
CCDC3-202ENST00000378839 Q6ZS92 163 aa11.12□□□□□ -0.63
CCDC3-202ENST00000378839 FAM90A1Q86YD7 464 aa11.12□□□□□ -0.63
CCDC3-202ENST00000378839 IFNA5P01569 189 aa11.12□□□□□ -0.63
CCDC3-202ENST00000378839 NKX6-1P78426 367 aaPredicted RBP11.12□□□□□ -0.63
CCDC3-202ENST00000378839 LCN15Q6UWW0 184 aa11.12□□□□□ -0.63
CCDC3-202ENST00000378839 BEND4Q6ZU67 534 aa11.12□□□□□ -0.63
CCDC3-202ENST00000378839 KDF1Q8NAX2 398 aaPredicted RBP11.12□□□□□ -0.63
CCDC3-202ENST00000378839 RCC1LQ96I51 464 aaKnown RBP11.12□□□□□ -0.63
CCDC3-202ENST00000378839 OR2V2Q96R30 315 aa11.12□□□□□ -0.63
CCDC3-202ENST00000378839 UBE2L5PA0A1B0GUS4 154 aa11.11□□□□□ -0.63
CCDC3-202ENST00000378839 C5orf52A6NGY3 159 aa11.11□□□□□ -0.63
CCDC3-202ENST00000378839 CLDN1O95832 211 aa11.11□□□□□ -0.63
CCDC3-202ENST00000378839 OR8U8P0C7N1 319 aa11.11□□□□□ -0.63
CCDC3-202ENST00000378839 MOGAT3Q86VF5 341 aa11.11□□□□□ -0.63
CCDC3-202ENST00000378839 ZBTB34Q8NCN2 500 aa11.11□□□□□ -0.63
CCDC3-202ENST00000378839 RAB39BQ96DA2 213 aa11.11□□□□□ -0.63
CCDC3-202ENST00000378839 GGACTQ9BVM4 153 aa11.11□□□□□ -0.63
CCDC3-202ENST00000378839 DOCK11Q5JSL3 2073 aa11.11□□□□□ -0.63
CCDC3-202ENST00000378839 LOC102723971A0A1B0GUV8 181 aa11.11□□□□□ -0.63
CCDC3-202ENST00000378839 SPRY3O43610 288 aa11.11□□□□□ -0.63
CCDC3-202ENST00000378839 IGHV2-70P01814 119 aa11.11□□□□□ -0.63
CCDC3-202ENST00000378839 C4orf17Q53FE4 359 aa11.11□□□□□ -0.63
CCDC3-202ENST00000378839 SLC25A24Q6NUK1 477 aa11.11□□□□□ -0.63
CCDC3-202ENST00000378839 FAM169BQ8N8A8 192 aa11.11□□□□□ -0.63
CCDC3-202ENST00000378839 TUBA4BQ9H853 241 aa11.11□□□□□ -0.63
CCDC3-202ENST00000378839 GNG13Q9P2W3 67 aa11.11□□□□□ -0.63
CCDC3-202ENST00000378839 RIF1Q5UIP0 2472 aaKnown RBP11.1□□□□□ -0.63
CCDC3-202ENST00000378839 TRAV1-1A0A0B4J248 108 aa11.1□□□□□ -0.63
CCDC3-202ENST00000378839 RNF212BA8MTL3 300 aa11.1□□□□□ -0.63
CCDC3-202ENST00000378839 S100A8P05109 93 aa11.1□□□□□ -0.63
CCDC3-202ENST00000378839 TUBG1P23258 451 aa11.1□□□□□ -0.63
CCDC3-202ENST00000378839 G0S2P27469 103 aa11.1□□□□□ -0.63
CCDC3-202ENST00000378839 ELLP55199 621 aaPredicted RBP11.1□□□□□ -0.63
CCDC3-202ENST00000378839 LOXL3P58215 753 aa11.1□□□□□ -0.63
CCDC3-202ENST00000378839 TLE4Q04727 773 aa11.1□□□□□ -0.63
CCDC3-202ENST00000378839 SLC38A11Q08AI6 406 aa11.1□□□□□ -0.63
CCDC3-202ENST00000378839 FAM27E3Q08E93 113 aa11.1□□□□□ -0.63
CCDC3-202ENST00000378839 LEAP2Q969E1 77 aa11.1□□□□□ -0.63
CCDC3-202ENST00000378839 TUBG2Q9NRH3 451 aa11.1□□□□□ -0.63
CCDC3-202ENST00000378839 BTBD17A6NE02 478 aa11.1□□□□□ -0.63
CCDC3-202ENST00000378839 SLC31A2O15432 143 aa11.1□□□□□ -0.63
CCDC3-202ENST00000378839 LHBP01229 141 aa11.1□□□□□ -0.63
CCDC3-202ENST00000378839 OR9G9P0C7N8 305 aa11.1□□□□□ -0.63
CCDC3-202ENST00000378839 RHEBQ15382 184 aa11.1□□□□□ -0.63
CCDC3-202ENST00000378839 RPL39P5Q59GN2 51 aa11.1□□□□□ -0.63
CCDC3-202ENST00000378839 ACSM6Q6P461 480 aa11.1□□□□□ -0.63
CCDC3-202ENST00000378839 DPPA3Q6W0C5 159 aa11.1□□□□□ -0.63
CCDC3-202ENST00000378839 OR10D4PQ8NGN7 298 aa11.1□□□□□ -0.63
CCDC3-202ENST00000378839 NINJ1Q92982 152 aa11.1□□□□□ -0.63
CCDC3-202ENST00000378839 ANKRD11Q6UB99 2663 aaPredicted RBP11.1□□□□□ -0.63
CCDC3-202ENST00000378839 AGAP20933 346 aa11.1□□□□□ -0.63
CCDC3-202ENST00000378839 PAX5Q02548 391 aa11.1□□□□□ -0.63
CCDC3-202ENST00000378839 TLE1Q04724 770 aa11.1□□□□□ -0.63
CCDC3-202ENST00000378839 MORN2Q502X0 79 aa11.1□□□□□ -0.63
CCDC3-202ENST00000378839 VKORC1L1Q8N0U8 176 aa11.1□□□□□ -0.63
CCDC3-202ENST00000378839 RPP25LQ8N5L8 163 aaKnown RBP11.1□□□□□ -0.63
CCDC3-202ENST00000378839 SCGB1C1Q8TD33 95 aa11.1□□□□□ -0.63
CCDC3-202ENST00000378839 TAF15Q92804 592 aaKnown RBP eCLIP11.1□□□□□ -0.63
CCDC3-202ENST00000378839 SMDT1Q9H4I9 107 aa11.1□□□□□ -0.63
CCDC3-202ENST00000378839 DSCAMO60469 2012 aa11.09□□□□□ -0.63
CCDC3-202ENST00000378839 RELNP78509 3460 aa11.09□□□□□ -0.63
CCDC3-202ENST00000378839 FAM90A26D6RGX4 464 aa11.09□□□□□ -0.63
CCDC3-202ENST00000378839 HSPB1P04792 205 aaKnown RBP11.09□□□□□ -0.63
CCDC3-202ENST00000378839 DEFA4P12838 97 aa11.09□□□□□ -0.63
CCDC3-202ENST00000378839 RTP5Q14D33 572 aa11.09□□□□□ -0.63
CCDC3-202ENST00000378839 TIMM23BQ5SRD1 257 aa11.09□□□□□ -0.63
CCDC3-202ENST00000378839 GFI1BQ5VTD9 330 aa11.09□□□□□ -0.63
Retrieved 100 of 20,778 RNA–protein pairs in 51.9 ms