RNA–Protein interactions for RNA: ENST00000373602.9

CCDC28B-201, Transcript of coiled-coil domain containing 28B, humanhuman

APPRIS P1 TSL 1 (best) BASIC

Gene CCDC28B, Length 1,089 nt, Biotype protein coding, Subcellular localisation Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CCDC28B-201ENST00000373602 FOXA2Q9Y261 457 aaPredicted RBP16.86■□□□□ 0.29
CCDC28B-201ENST00000373602 A0A1W2PN81 502 aa16.85■□□□□ 0.29
CCDC28B-201ENST00000373602 SMIM30A4D0T7 59 aa16.85■□□□□ 0.29
CCDC28B-201ENST00000373602 NOTOA8MTQ0 251 aa16.85■□□□□ 0.29
CCDC28B-201ENST00000373602 SEC14L6B5MCN3 397 aa16.85■□□□□ 0.29
CCDC28B-201ENST00000373602 RAMP3O60896 148 aa16.85■□□□□ 0.29
CCDC28B-201ENST00000373602 OR8U8P0C7N1 319 aa16.85■□□□□ 0.29
CCDC28B-201ENST00000373602 OR8U9P0C7N5 309 aa16.85■□□□□ 0.29
CCDC28B-201ENST00000373602 CHRNA7P36544 502 aa16.85■□□□□ 0.29
CCDC28B-201ENST00000373602 GNB1P62873 340 aa16.85■□□□□ 0.29
CCDC28B-201ENST00000373602 ASPHD1Q5U4P2 390 aa16.85■□□□□ 0.29
CCDC28B-201ENST00000373602 Q6ZS49 121 aa16.85■□□□□ 0.29
CCDC28B-201ENST00000373602 ABHD5Q8WTS1 349 aa16.85■□□□□ 0.29
CCDC28B-201ENST00000373602 FLYWCH2Q96CP2 140 aaKnown RBP16.85■□□□□ 0.29
CCDC28B-201ENST00000373602 OR5B12Q96R08 314 aa16.85■□□□□ 0.29
CCDC28B-201ENST00000373602 CLCC1Q96S66 551 aa16.85■□□□□ 0.29
CCDC28B-201ENST00000373602 ATG5Q9H1Y0 275 aa16.85■□□□□ 0.29
CCDC28B-201ENST00000373602 SDHAF2Q9NX18 166 aa16.85■□□□□ 0.29
CCDC28B-201ENST00000373602 STUB1Q9UNE7 303 aa16.85■□□□□ 0.29
CCDC28B-201ENST00000373602 A3GALT2U3KPV4 340 aa16.85■□□□□ 0.29
CCDC28B-201ENST00000373602 SNRPBP14678 240 aaKnown RBP16.84■□□□□ 0.29
CCDC28B-201ENST00000373602 ZNF616Q08AN1 781 aa16.84■□□□□ 0.29
CCDC28B-201ENST00000373602 ARFRP1Q13795 201 aa16.84■□□□□ 0.29
CCDC28B-201ENST00000373602 ARL6IP1Q15041 203 aa16.84■□□□□ 0.29
CCDC28B-201ENST00000373602 AKIRIN2Q53H80 203 aa16.84■□□□□ 0.29
CCDC28B-201ENST00000373602 PPP1R27Q86WC6 154 aa16.84■□□□□ 0.29
CCDC28B-201ENST00000373602 CENPOQ9BU64 300 aa16.84■□□□□ 0.29
CCDC28B-201ENST00000373602 OR2D2Q9H210 308 aa16.84■□□□□ 0.29
CCDC28B-201ENST00000373602 EXOSC5Q9NQT4 235 aaKnown RBP eCLIP16.84■□□□□ 0.29
CCDC28B-201ENST00000373602 SLC35D1Q9NTN3 355 aa16.84■□□□□ 0.29
CCDC28B-201ENST00000373602 SCOCQ9UIL1 159 aa16.84■□□□□ 0.29
CCDC28B-201ENST00000373602 CA2P00918 260 aa16.83■□□□□ 0.28
CCDC28B-201ENST00000373602 TALDO1P37837 337 aa16.83■□□□□ 0.28
CCDC28B-201ENST00000373602 DCTN2Q13561 401 aaKnown RBP16.83■□□□□ 0.28
CCDC28B-201ENST00000373602 TPRA1Q86W33 373 aa16.83■□□□□ 0.28
CCDC28B-201ENST00000373602 FAM103A1Q9BTL3 118 aaKnown RBP16.83■□□□□ 0.28
CCDC28B-201ENST00000373602 IGKV1D-8A0A087WSZ0 117 aa16.82■□□□□ 0.28
CCDC28B-201ENST00000373602 SLC25A17O43808 307 aa16.82■□□□□ 0.28
CCDC28B-201ENST00000373602 ACTBL2Q562R1 376 aa16.82■□□□□ 0.28
CCDC28B-201ENST00000373602 PYHIN1Q6K0P9 492 aa16.82■□□□□ 0.28
CCDC28B-201ENST00000373602 UNQ5815/PRO19632Q6UWF5 114 aa16.82■□□□□ 0.28
CCDC28B-201ENST00000373602 LFNGQ8NES3 379 aa16.82■□□□□ 0.28
CCDC28B-201ENST00000373602 CASTOR1Q8WTX7 329 aa16.82■□□□□ 0.28
CCDC28B-201ENST00000373602 C5orf30Q96GV9 206 aa16.82■□□□□ 0.28
CCDC28B-201ENST00000373602 GINS4Q9BRT9 223 aa16.82■□□□□ 0.28
CCDC28B-201ENST00000373602 TPSG1Q9NRR2 321 aa16.82■□□□□ 0.28
CCDC28B-201ENST00000373602 ELF5Q9UKW6 265 aaPredicted RBP16.82■□□□□ 0.28
CCDC28B-201ENST00000373602 SSR3Q9UNL2 185 aa16.82■□□□□ 0.28
CCDC28B-201ENST00000373602 IGLV2-23P01705 113 aa16.81■□□□□ 0.28
CCDC28B-201ENST00000373602 DTYMKP23919 212 aa16.81■□□□□ 0.28
CCDC28B-201ENST00000373602 LGALS7P47929 136 aa16.81■□□□□ 0.28
CCDC28B-201ENST00000373602 TAGLNQ01995 201 aaKnown RBP16.81■□□□□ 0.28
CCDC28B-201ENST00000373602 ZNF260Q3ZCT1 412 aa16.81■□□□□ 0.28
CCDC28B-201ENST00000373602 CDNFQ49AH0 187 aa16.81■□□□□ 0.28
CCDC28B-201ENST00000373602 ZNF773Q6PK81 442 aa16.81■□□□□ 0.28
CCDC28B-201ENST00000373602 H1FOOQ8IZA3 346 aaPredicted RBP16.81■□□□□ 0.28
CCDC28B-201ENST00000373602 ARPC1AQ92747 370 aa16.81■□□□□ 0.28
CCDC28B-201ENST00000373602 B9D2Q9BPU9 175 aa16.81■□□□□ 0.28
CCDC28B-201ENST00000373602 ALX4Q9H161 411 aaPredicted RBP16.81■□□□□ 0.28
CCDC28B-201ENST00000373602 ARPC1BO15143 372 aaKnown RBP16.8■□□□□ 0.28
CCDC28B-201ENST00000373602 CRYGBP07316 175 aa16.8■□□□□ 0.28
CCDC28B-201ENST00000373602 LGALS1P09382 135 aaKnown RBP16.8■□□□□ 0.28
CCDC28B-201ENST00000373602 FXYD3Q14802 87 aa16.8■□□□□ 0.28
CCDC28B-201ENST00000373602 OR51E2Q9H255 320 aa16.8■□□□□ 0.28
CCDC28B-201ENST00000373602 DAPK2Q9UIK4 370 aa16.8■□□□□ 0.28
CCDC28B-201ENST00000373602 RBM7Q9Y580 266 aaKnown RBP16.8■□□□□ 0.28
CCDC28B-201ENST00000373602 ECI1P42126 302 aa16.79■□□□□ 0.28
CCDC28B-201ENST00000373602 INSL3P51460 131 aa16.79■□□□□ 0.28
CCDC28B-201ENST00000373602 SSBP2P81877 361 aaPredicted RBP16.79■□□□□ 0.28
CCDC28B-201ENST00000373602 CD69Q07108 199 aa16.79■□□□□ 0.28
CCDC28B-201ENST00000373602 TMEM177Q53S58 311 aa16.79■□□□□ 0.28
CCDC28B-201ENST00000373602 HACD4Q5VWC8 232 aa16.79■□□□□ 0.28
CCDC28B-201ENST00000373602 SFXN4Q6P4A7 337 aa16.79■□□□□ 0.28
CCDC28B-201ENST00000373602 SLA2Q9H6Q3 261 aa16.79■□□□□ 0.28
CCDC28B-201ENST00000373602 RRP15Q9Y3B9 282 aaKnown RBP16.79■□□□□ 0.28
CCDC28B-201ENST00000373602 DNAH9Q9NYC9 4486 aa16.79■□□□□ 0.28
CCDC28B-201ENST00000373602 LINC01619G3V211 115 aa16.78■□□□□ 0.28
CCDC28B-201ENST00000373602 SCGNO76038 276 aa16.78■□□□□ 0.28
CCDC28B-201ENST00000373602 RRASP10301 218 aa16.78■□□□□ 0.28
CCDC28B-201ENST00000373602 CD40LGP29965 261 aa16.78■□□□□ 0.28
CCDC28B-201ENST00000373602 SDC2P34741 201 aa16.78■□□□□ 0.28
CCDC28B-201ENST00000373602 VAX1Q5SQQ9 334 aa16.78■□□□□ 0.28
CCDC28B-201ENST00000373602 BVESQ8NE79 360 aa16.78■□□□□ 0.28
CCDC28B-201ENST00000373602 GRPEL2Q8TAA5 225 aa16.78■□□□□ 0.28
CCDC28B-201ENST00000373602 DCUN1D4Q92564 292 aa16.78■□□□□ 0.28
CCDC28B-201ENST00000373602 ADTRPQ96IZ2 230 aa16.78■□□□□ 0.28
CCDC28B-201ENST00000373602 HARBI1Q96MB7 349 aa16.78■□□□□ 0.28
CCDC28B-201ENST00000373602 MS4A10Q96PG2 267 aa16.78■□□□□ 0.28
CCDC28B-201ENST00000373602 PRR25Q96S07 402 aa16.78■□□□□ 0.28
CCDC28B-201ENST00000373602 DCSTAMPQ9H295 470 aa16.78■□□□□ 0.28
CCDC28B-201ENST00000373602 LSM4Q9Y4Z0 139 aaKnown RBP16.78■□□□□ 0.28
CCDC28B-201ENST00000373602 SRRM4A7MD48 611 aaKnown RBP16.77■□□□□ 0.28
CCDC28B-201ENST00000373602 OVOL1O14753 267 aa16.77■□□□□ 0.28
CCDC28B-201ENST00000373602 DUTP33316 252 aaKnown RBP16.77■□□□□ 0.28
CCDC28B-201ENST00000373602 PJVKQ0ZLH3 352 aa16.77■□□□□ 0.28
CCDC28B-201ENST00000373602 CBX3Q13185 183 aa16.77■□□□□ 0.28
CCDC28B-201ENST00000373602 RTL8BQ17RB0 113 aa16.77■□□□□ 0.28
CCDC28B-201ENST00000373602 C11orf87Q6NUJ2 197 aa16.77■□□□□ 0.28
CCDC28B-201ENST00000373602 LGALS14Q8TCE9 139 aa16.77■□□□□ 0.28
CCDC28B-201ENST00000373602 DDB2Q92466 427 aa16.77■□□□□ 0.28
Retrieved 100 of 20,778 RNA–protein pairs in 39.3 ms