RNA–Protein interactions for RNA: ENST00000372405.1

PTPRF-202, Transcript of protein tyrosine phosphatase, receptor type F, humanhuman

TSL 1 (best)

Gene PTPRF, Length 1,962 nt, Biotype processed transcript, Subcellular localisation Endoplasmic reticulum, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
PTPRF-202ENST00000372405 TCTEX1D1Q8N7M0 179 aa11.3□□□□□ -0.6
PTPRF-202ENST00000372405 OR10A7Q8NGE5 316 aa11.3□□□□□ -0.6
PTPRF-202ENST00000372405 DDB2Q92466 427 aa11.3□□□□□ -0.6
PTPRF-202ENST00000372405 LPAR3Q9UBY5 353 aa11.3□□□□□ -0.6
PTPRF-202ENST00000372405 PIGBOS1A0A0B4J2F0 54 aa11.3□□□□□ -0.6
PTPRF-202ENST00000372405 SSSCA1O60232 199 aa11.3□□□□□ -0.6
PTPRF-202ENST00000372405 KRASP01116 189 aa11.3□□□□□ -0.6
PTPRF-202ENST00000372405 NUP62P37198 522 aaPredicted RBP11.3□□□□□ -0.6
PTPRF-202ENST00000372405 UBA52P62987 128 aaKnown RBP11.3□□□□□ -0.6
PTPRF-202ENST00000372405 LYG1Q8N1E2 194 aa11.3□□□□□ -0.6
PTPRF-202ENST00000372405 RNASE11Q8TAA1 199 aaKnown RBP11.3□□□□□ -0.6
PTPRF-202ENST00000372405 PLEKHA2Q9HB19 425 aa11.3□□□□□ -0.6
PTPRF-202ENST00000372405 MMP24Q9Y5R2 645 aa11.3□□□□□ -0.6
PTPRF-202ENST00000372405 RAB29O14966 203 aa11.29□□□□□ -0.6
PTPRF-202ENST00000372405 P2RY1P47900 373 aa11.29□□□□□ -0.6
PTPRF-202ENST00000372405 STOML3Q8TAV4 291 aa11.29□□□□□ -0.6
PTPRF-202ENST00000372405 SCARB1Q8WTV0 552 aa11.29□□□□□ -0.6
PTPRF-202ENST00000372405 RBMXL1Q96E39 390 aaKnown RBP11.29□□□□□ -0.6
PTPRF-202ENST00000372405 GSX2Q9BZM3 304 aa11.29□□□□□ -0.6
PTPRF-202ENST00000372405 ASH1LQ9NR48 2969 aaKnown RBP11.29□□□□□ -0.6
PTPRF-202ENST00000372405 ARHGAP32A7KAX9 2087 aa11.29□□□□□ -0.6
PTPRF-202ENST00000372405 PPIHO43447 177 aaKnown RBP11.28□□□□□ -0.6
PTPRF-202ENST00000372405 FCGR3BO75015 233 aa11.28□□□□□ -0.6
PTPRF-202ENST00000372405 PAX9P55771 341 aa11.28□□□□□ -0.6
PTPRF-202ENST00000372405 TMEM33P57088 247 aa11.28□□□□□ -0.6
PTPRF-202ENST00000372405 MIDNQ504T8 468 aa11.28□□□□□ -0.6
PTPRF-202ENST00000372405 CLLU1Q5K131 121 aa11.28□□□□□ -0.6
PTPRF-202ENST00000372405 ZNF436-AS1Q8NC38 126 aaPredicted RBP11.28□□□□□ -0.6
PTPRF-202ENST00000372405 FBXL17Q9UF56 701 aa11.28□□□□□ -0.6
PTPRF-202ENST00000372405 TRBV23-1A0A0A0MS06 115 aa11.28□□□□□ -0.6
PTPRF-202ENST00000372405 CHST1O43916 411 aa11.28□□□□□ -0.6
PTPRF-202ENST00000372405 NHLH2Q02577 135 aa11.28□□□□□ -0.6
PTPRF-202ENST00000372405 ZNF383Q8NA42 475 aa11.28□□□□□ -0.6
PTPRF-202ENST00000372405 CHODLQ9H9P2 273 aa11.28□□□□□ -0.6
PTPRF-202ENST00000372405 IGSF23A1L1A6 192 aa11.27□□□□□ -0.61
PTPRF-202ENST00000372405 FAM24AA6NFZ4 105 aa11.27□□□□□ -0.61
PTPRF-202ENST00000372405 GPR137BO60478 399 aa11.27□□□□□ -0.61
PTPRF-202ENST00000372405 SRSF1Q07955 248 aaKnown RBP eCLIP11.27□□□□□ -0.61
PTPRF-202ENST00000372405 FAM74A1Q5RGS3 127 aa11.27□□□□□ -0.61
PTPRF-202ENST00000372405 GPR157Q5UAW9 335 aa11.27□□□□□ -0.61
PTPRF-202ENST00000372405 RPL7L1Q6DKI1 246 aaKnown RBP11.27□□□□□ -0.61
PTPRF-202ENST00000372405 OR2C3Q8N628 320 aa11.27□□□□□ -0.61
PTPRF-202ENST00000372405 RAB1CQ92928 201 aa11.27□□□□□ -0.61
PTPRF-202ENST00000372405 SMIM3Q9BZL3 60 aa11.27□□□□□ -0.61
PTPRF-202ENST00000372405 ZC4H2Q9NQZ6 224 aa11.27□□□□□ -0.61
PTPRF-202ENST00000372405 LYRM2Q9NU23 88 aaPredicted RBP11.27□□□□□ -0.61
PTPRF-202ENST00000372405 COA4Q9NYJ1 87 aa11.27□□□□□ -0.61
PTPRF-202ENST00000372405 MARCH11A6NNE9 402 aa11.27□□□□□ -0.61
PTPRF-202ENST00000372405 RBFOX2O43251 390 aaKnown RBP eCLIP11.27□□□□□ -0.613e-6■■■■□ 21.5
PTPRF-202ENST00000372405 F12P00748 615 aaPredicted RBP11.27□□□□□ -0.61
PTPRF-202ENST00000372405 NMBP08949 121 aa11.27□□□□□ -0.61
PTPRF-202ENST00000372405 IGHV1-8P0DP01 117 aa11.27□□□□□ -0.61
PTPRF-202ENST00000372405 DLX1P56177 255 aa11.27□□□□□ -0.61
PTPRF-202ENST00000372405 WDR25Q64LD2 544 aaPredicted RBP11.27□□□□□ -0.61
PTPRF-202ENST00000372405 CD300LFQ8TDQ1 290 aa11.27□□□□□ -0.61
PTPRF-202ENST00000372405 WFDC1Q9HC57 220 aa11.27□□□□□ -0.61
PTPRF-202ENST00000372405 MIOXQ9UGB7 285 aa11.27□□□□□ -0.61
PTPRF-202ENST00000372405 A0A087X0M5 115 aa11.26□□□□□ -0.61
PTPRF-202ENST00000372405 A0A1B0GX30 115 aa11.26□□□□□ -0.61
PTPRF-202ENST00000372405 CT45A6P0DMU7 189 aa11.26□□□□□ -0.61
PTPRF-202ENST00000372405 CT45A5P0DMU8 189 aa11.26□□□□□ -0.61
PTPRF-202ENST00000372405 CT45A7P0DMV0 189 aa11.26□□□□□ -0.61
PTPRF-202ENST00000372405 EWSR1Q01844 656 aaKnown RBP eCLIP11.26□□□□□ -0.616e-7■■■■□ 25.8
PTPRF-202ENST00000372405 OR8B3Q8NGG8 313 aa11.26□□□□□ -0.61
PTPRF-202ENST00000372405 ZNF596Q8TC21 504 aa11.26□□□□□ -0.61
PTPRF-202ENST00000372405 IGFBPL1Q8WX77 278 aa11.26□□□□□ -0.61
PTPRF-202ENST00000372405 R3HDM4Q96D70 268 aa11.26□□□□□ -0.61
PTPRF-202ENST00000372405 NEIL1Q96FI4 390 aaPredicted RBP11.26□□□□□ -0.61
PTPRF-202ENST00000372405 TIMD4Q96H15 378 aa11.26□□□□□ -0.61
PTPRF-202ENST00000372405 OR8B2Q96RD0 313 aa11.26□□□□□ -0.61
PTPRF-202ENST00000372405 S1PR3Q99500 378 aa11.26□□□□□ -0.61
PTPRF-202ENST00000372405 LINC00862A6NCI5 91 aa11.25□□□□□ -0.61
PTPRF-202ENST00000372405 C22orf46C9J442 243 aa11.25□□□□□ -0.61
PTPRF-202ENST00000372405 OVOL3O00110 214 aa11.25□□□□□ -0.61
PTPRF-202ENST00000372405 TOR1AO14656 332 aa11.25□□□□□ -0.61
PTPRF-202ENST00000372405 TAAR5O14804 337 aa11.25□□□□□ -0.61
PTPRF-202ENST00000372405 HPRT1P00492 218 aa11.25□□□□□ -0.61
PTPRF-202ENST00000372405 MMP9P14780 707 aa11.25□□□□□ -0.61
PTPRF-202ENST00000372405 CAV2P51636 162 aa11.25□□□□□ -0.61
PTPRF-202ENST00000372405 ZNF833PQ6ZTB9 187 aa11.25□□□□□ -0.61
PTPRF-202ENST00000372405 BAP18Q8IXM2 172 aa11.25□□□□□ -0.61
PTPRF-202ENST00000372405 VKORC1L1Q8N0U8 176 aa11.25□□□□□ -0.61
PTPRF-202ENST00000372405 TMEM252Q8N6L7 170 aa11.25□□□□□ -0.61
PTPRF-202ENST00000372405 C8orf46Q8TAG6 207 aa11.25□□□□□ -0.61
PTPRF-202ENST00000372405 PHYHIPLQ96FC7 376 aa11.25□□□□□ -0.61
PTPRF-202ENST00000372405 NARFLQ9H6Q4 476 aa11.25□□□□□ -0.61
PTPRF-202ENST00000372405 PRELID3BQ9Y3B1 194 aa11.25□□□□□ -0.61
PTPRF-202ENST00000372405 TET2Q6N021 2002 aaPredicted RBP11.25□□□□□ -0.61
PTPRF-202ENST00000372405 CRYBG3Q68DQ2 2970 aa11.25□□□□□ -0.61
PTPRF-202ENST00000372405 J3QR06 171 aa11.25□□□□□ -0.61
PTPRF-202ENST00000372405 WRBO00258 174 aa11.25□□□□□ -0.61
PTPRF-202ENST00000372405 GPR37O15354 613 aa11.25□□□□□ -0.61
PTPRF-202ENST00000372405 SYNGR2O43760 224 aa11.25□□□□□ -0.61
PTPRF-202ENST00000372405 OR9G9P0C7N8 305 aa11.25□□□□□ -0.61
PTPRF-202ENST00000372405 TPT1P13693 172 aaKnown RBP11.25□□□□□ -0.61
PTPRF-202ENST00000372405 PVALBP20472 110 aaPredicted RBP11.25□□□□□ -0.61
PTPRF-202ENST00000372405 THBS3P49746 956 aa11.25□□□□□ -0.61
PTPRF-202ENST00000372405 H2BFWTQ7Z2G1 175 aa11.25□□□□□ -0.61
PTPRF-202ENST00000372405 LINC00311Q8N616 119 aa11.25□□□□□ -0.61
PTPRF-202ENST00000372405 C8orf31Q8N9H6 132 aa11.25□□□□□ -0.61
Retrieved 100 of 20,778 RNA–protein pairs in 24.1 ms