RNA–Protein interactions for RNA: ENST00000339859.8

USP54-201, Transcript of ubiquitin specific peptidase 54, humanhuman

APPRIS P1 TSL 5 BASIC

Gene USP54, Length 6,247 nt, Biotype protein coding, Subcellular localisation Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
USP54-201ENST00000339859 SRD5A1P18405 259 aa8.53□□□□□ -1.04
USP54-201ENST00000339859 UCP3P55916 312 aa8.53□□□□□ -1.04
USP54-201ENST00000339859 SOHLH1Q5JUK2 328 aa8.53□□□□□ -1.04
USP54-201ENST00000339859 SSMEM1Q8WWF3 244 aa8.53□□□□□ -1.04
USP54-201ENST00000339859 TMEM222Q9H0R3 208 aa8.53□□□□□ -1.04
USP54-201ENST00000339859 PATZ1Q9HBE1 687 aaKnown RBP8.53□□□□□ -1.04
USP54-201ENST00000339859 HPXP02790 462 aa8.53□□□□□ -1.04
USP54-201ENST00000339859 HIST1H1EP10412 219 aaKnown RBP8.53□□□□□ -1.04
USP54-201ENST00000339859 MIDNQ504T8 468 aa8.53□□□□□ -1.04
USP54-201ENST00000339859 TEPPQ6URK8 271 aa8.53□□□□□ -1.04
USP54-201ENST00000339859 BAP18Q8IXM2 172 aa8.53□□□□□ -1.04
USP54-201ENST00000339859 OR4X1Q8NH49 305 aa8.53□□□□□ -1.04
USP54-201ENST00000339859 MFNGO00587 321 aa8.53□□□□□ -1.04
USP54-201ENST00000339859 ICMTO60725 284 aa8.53□□□□□ -1.04
USP54-201ENST00000339859 MMP9P14780 707 aa8.53□□□□□ -1.04
USP54-201ENST00000339859 S100A4P26447 101 aaKnown RBP8.53□□□□□ -1.04
USP54-201ENST00000339859 ZNF146Q15072 292 aa8.53□□□□□ -1.04
USP54-201ENST00000339859 ADIRFQ15847 76 aa8.53□□□□□ -1.04
USP54-201ENST00000339859 KHDC3LQ587J8 217 aa8.53□□□□□ -1.04
USP54-201ENST00000339859 OR5M8Q8NGP6 311 aa8.53□□□□□ -1.04
USP54-201ENST00000339859 IL22RA2Q969J5 263 aa8.53□□□□□ -1.04
USP54-201ENST00000339859 TMEM167BQ9NRX6 74 aa8.53□□□□□ -1.04
USP54-201ENST00000339859 SRRM5B3KS81 715 aa8.52□□□□□ -1.04
USP54-201ENST00000339859 CDC34P49427 236 aaPredicted RBP8.52□□□□□ -1.04
USP54-201ENST00000339859 AKR1D1P51857 326 aa8.52□□□□□ -1.04
USP54-201ENST00000339859 HOXA4Q00056 320 aaPredicted RBP8.52□□□□□ -1.04
USP54-201ENST00000339859 LYZL2Q7Z4W2 148 aa8.52□□□□□ -1.04
USP54-201ENST00000339859 OR8I2Q8N0Y5 310 aa8.52□□□□□ -1.04
USP54-201ENST00000339859 OR10S1Q8NGN2 331 aa8.52□□□□□ -1.04
USP54-201ENST00000339859 TXN2Q99757 166 aa8.52□□□□□ -1.04
USP54-201ENST00000339859 NXF2Q9GZY0 626 aaKnown RBP8.52□□□□□ -1.04
USP54-201ENST00000339859 MUC22E2RYF6 1773 aaPredicted RBP8.52□□□□□ -1.05
USP54-201ENST00000339859 NINQ8N4C6 2090 aa8.52□□□□□ -1.05
USP54-201ENST00000339859 MPC2O95563 127 aa8.52□□□□□ -1.05
USP54-201ENST00000339859 TRGV3P03979 118 aa8.52□□□□□ -1.05
USP54-201ENST00000339859 SULT1A1P50225 295 aa8.52□□□□□ -1.05
USP54-201ENST00000339859 EFNB3Q15768 340 aa8.52□□□□□ -1.05
USP54-201ENST00000339859 PPP1R27Q86WC6 154 aa8.52□□□□□ -1.05
USP54-201ENST00000339859 STXBP6Q8NFX7 210 aa8.52□□□□□ -1.05
USP54-201ENST00000339859 NEUROG1Q92886 237 aa8.52□□□□□ -1.05
USP54-201ENST00000339859 PUS1Q9Y606 427 aaKnown RBP eCLIP8.52□□□□□ -1.05
USP54-201ENST00000339859 CFDP00746 253 aaPredicted RBP8.52□□□□□ -1.05
USP54-201ENST00000339859 SPNP16150 400 aa8.52□□□□□ -1.05
USP54-201ENST00000339859 WDR25Q64LD2 544 aaPredicted RBP8.52□□□□□ -1.05
USP54-201ENST00000339859 WFDC3Q8IUB2 231 aa8.52□□□□□ -1.05
USP54-201ENST00000339859 ZNF525Q8N782 197 aa8.52□□□□□ -1.05
USP54-201ENST00000339859 MARC2Q969Z3 335 aa8.52□□□□□ -1.05
USP54-201ENST00000339859 RHOVQ96L33 236 aa8.52□□□□□ -1.05
USP54-201ENST00000339859 MS4A10Q96PG2 267 aa8.52□□□□□ -1.05
USP54-201ENST00000339859 SPOCK3Q9BQ16 436 aa8.52□□□□□ -1.05
USP54-201ENST00000339859 SPTBP11277 2137 aa8.52□□□□□ -1.05
USP54-201ENST00000339859 RNF223E7ERA6 249 aa8.52□□□□□ -1.05
USP54-201ENST00000339859 HLA-GP17693 338 aa8.52□□□□□ -1.05
USP54-201ENST00000339859 C1QL2Q7Z5L3 287 aa8.52□□□□□ -1.05
USP54-201ENST00000339859 STPG3Q8N7X2 389 aa8.52□□□□□ -1.05
USP54-201ENST00000339859 MRPL30Q8TCC3 161 aaKnown RBP8.52□□□□□ -1.05
USP54-201ENST00000339859 PARP12Q9H0J9 701 aaKnown RBP8.52□□□□□ -1.05
USP54-201ENST00000339859 PNRC2Q9NPJ4 139 aaKnown RBP8.52□□□□□ -1.05
USP54-201ENST00000339859 HEATR5BQ9P2D3 2071 aa8.52□□□□□ -1.05
USP54-201ENST00000339859 YPEL1O60688 119 aa8.52□□□□□ -1.05
USP54-201ENST00000339859 SLC6A1P30531 599 aa8.52□□□□□ -1.05
USP54-201ENST00000339859 P2RY4P51582 365 aa8.52□□□□□ -1.05
USP54-201ENST00000339859 FAM209BQ5JX69 171 aa8.52□□□□□ -1.05
USP54-201ENST00000339859 MINOS1Q5TGZ0 78 aa8.52□□□□□ -1.05
USP54-201ENST00000339859 RPL7L1Q6DKI1 246 aaKnown RBP8.52□□□□□ -1.05
USP54-201ENST00000339859 EBLN2Q6P2I7 272 aa8.52□□□□□ -1.05
USP54-201ENST00000339859 DMRTC2Q8IXT2 367 aaPredicted RBP8.52□□□□□ -1.05
USP54-201ENST00000339859 SUN5Q8TC36 379 aa8.52□□□□□ -1.05
USP54-201ENST00000339859 ARPC1AQ92747 370 aa8.52□□□□□ -1.05
USP54-201ENST00000339859 YPEL2Q96QA6 119 aa8.52□□□□□ -1.05
USP54-201ENST00000339859 RBM38Q9H0Z9 239 aaKnown RBP8.52□□□□□ -1.05
USP54-201ENST00000339859 C19orf12Q9NSK7 152 aa8.52□□□□□ -1.05
USP54-201ENST00000339859 PRR13Q9NZ81 148 aa8.52□□□□□ -1.05
USP54-201ENST00000339859 KPTNQ9Y664 436 aa8.52□□□□□ -1.05
USP54-201ENST00000339859 MINOS1-NBL1R4GNA1 71 aa8.52□□□□□ -1.05
USP54-201ENST00000339859 IGHV3-21A0A0B4J1V1 117 aa8.51□□□□□ -1.05
USP54-201ENST00000339859 HSPE1P61604 102 aaKnown RBP8.51□□□□□ -1.05
USP54-201ENST00000339859 ZNF497Q6ZNH5 498 aa8.51□□□□□ -1.05
USP54-201ENST00000339859 OR52M1Q8NGK5 317 aa8.51□□□□□ -1.05
USP54-201ENST00000339859 OR10G4Q8NGN3 311 aa8.51□□□□□ -1.05
USP54-201ENST00000339859 OR10G9Q8NGN4 311 aa8.51□□□□□ -1.05
USP54-201ENST00000339859 OR10G7Q8NGN6 311 aa8.51□□□□□ -1.05
USP54-201ENST00000339859 SLC25A38Q96DW6 304 aa8.51□□□□□ -1.05
USP54-201ENST00000339859 LINC00052Q96N35 136 aa8.51□□□□□ -1.05
USP54-201ENST00000339859 WDR61Q9GZS3 305 aaKnown RBP8.51□□□□□ -1.05
USP54-201ENST00000339859 RPL39P5Q59GN2 51 aa8.51□□□□□ -1.05
USP54-201ENST00000339859 TMED6Q8WW62 240 aa8.51□□□□□ -1.05
USP54-201ENST00000339859 RGP1Q92546 391 aaPredicted RBP8.51□□□□□ -1.05
USP54-201ENST00000339859 GTF3AQ92664 365 aaKnown RBP8.51□□□□□ -1.05
USP54-201ENST00000339859 PLXND1Q9Y4D7 1925 aa8.51□□□□□ -1.05
USP54-201ENST00000339859 FAM90A26D6RGX4 464 aa8.51□□□□□ -1.05
USP54-201ENST00000339859 ADAP1O75689 374 aa8.51□□□□□ -1.05
USP54-201ENST00000339859 CCL3L1P16619 93 aa8.51□□□□□ -1.05
USP54-201ENST00000339859 PJVKQ0ZLH3 352 aa8.51□□□□□ -1.05
USP54-201ENST00000339859 DRAM1Q8N682 238 aa8.51□□□□□ -1.05
USP54-201ENST00000339859 MAS1LP35410 378 aa8.51□□□□□ -1.05
USP54-201ENST00000339859 HAGHQ16775 308 aa8.51□□□□□ -1.05
USP54-201ENST00000339859 CCDC28AQ8IWP9 274 aa8.51□□□□□ -1.05
USP54-201ENST00000339859 SELENOHQ8IZQ5 122 aaKnown RBP8.51□□□□□ -1.05
USP54-201ENST00000339859 BPESC1Q9GZL8 116 aa8.51□□□□□ -1.05
Retrieved 100 of 20,778 RNA–protein pairs in 66.7 ms