RNA–Protein interactions for RNA: ENST00000339701.7

CSMD3-202, Transcript of CUB and Sushi multiple domains 3, humanhuman

TSL 1 (best)

Gene CSMD3, Length 10,773 nt, Biotype protein coding, Subcellular localisation Cytoplasm, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CSMD3-202ENST00000339701 DTX4Q9Y2E6 619 aa2.87□□□□□ -1.95
CSMD3-202ENST00000339701 MALRD1Q5VYJ5 2156 aa2.87□□□□□ -1.95
CSMD3-202ENST00000339701 OR4C46A6NHA9 309 aa2.86□□□□□ -1.95
CSMD3-202ENST00000339701 FNDC10F2Z333 226 aa2.86□□□□□ -1.95
CSMD3-202ENST00000339701 MGST1P10620 155 aaKnown RBP2.86□□□□□ -1.95
CSMD3-202ENST00000339701 LMO1P25800 156 aa2.86□□□□□ -1.95
CSMD3-202ENST00000339701 ORMDL2Q53FV1 153 aa2.86□□□□□ -1.95
CSMD3-202ENST00000339701 TMEM92Q6UXU6 159 aa2.86□□□□□ -1.95
CSMD3-202ENST00000339701 WDFY1Q8IWB7 410 aa2.86□□□□□ -1.95
CSMD3-202ENST00000339701 TMEM37Q8WXS4 190 aa2.86□□□□□ -1.95
CSMD3-202ENST00000339701 C5orf30Q96GV9 206 aa2.86□□□□□ -1.95
CSMD3-202ENST00000339701 DMRTA2Q96SC8 542 aa2.86□□□□□ -1.95
CSMD3-202ENST00000339701 TBX5Q99593 518 aa2.86□□□□□ -1.95
CSMD3-202ENST00000339701 RARRES2Q99969 163 aa2.86□□□□□ -1.95
CSMD3-202ENST00000339701 A0A1B0GWB2 263 aa2.86□□□□□ -1.95
CSMD3-202ENST00000339701 OR4C45A6NMZ5 311 aa2.86□□□□□ -1.95
CSMD3-202ENST00000339701 TM4SF5O14894 197 aa2.86□□□□□ -1.95
CSMD3-202ENST00000339701 SS18L1O75177 396 aaPredicted RBP2.86□□□□□ -1.95
CSMD3-202ENST00000339701 BCL2P10415 239 aa2.86□□□□□ -1.95
CSMD3-202ENST00000339701 PRSS36Q5K4E3 855 aa2.86□□□□□ -1.95
CSMD3-202ENST00000339701 TMEM116Q8NCL8 245 aa2.86□□□□□ -1.95
CSMD3-202ENST00000339701 FBLIM1Q8WUP2 373 aa2.86□□□□□ -1.95
CSMD3-202ENST00000339701 SRSF8Q9BRL6 282 aaKnown RBP2.86□□□□□ -1.95
CSMD3-202ENST00000339701 KLK5Q9Y337 293 aaPredicted RBP2.86□□□□□ -1.95
CSMD3-202ENST00000339701 PXMP4Q9Y6I8 212 aa2.86□□□□□ -1.95
CSMD3-202ENST00000339701 IGHV1OR21-1A0A087WYE8 117 aa2.86□□□□□ -1.95
CSMD3-202ENST00000339701 LOC107986453A0A1B0GWG9 222 aa2.86□□□□□ -1.95
CSMD3-202ENST00000339701 TCRBV5S1A1TA0A578 114 aa2.86□□□□□ -1.95
CSMD3-202ENST00000339701 TCRBV4S1A1TA0A5B7 111 aa2.86□□□□□ -1.95
CSMD3-202ENST00000339701 C5orf49A4QMS7 147 aa2.86□□□□□ -1.95
CSMD3-202ENST00000339701 FAM231BA6NCW3 169 aa2.86□□□□□ -1.95
CSMD3-202ENST00000339701 PRRT4C9JH25 899 aa2.86□□□□□ -1.95
CSMD3-202ENST00000339701 LYZL6O75951 148 aa2.86□□□□□ -1.95
CSMD3-202ENST00000339701 PPP1R3DO95685 299 aa2.86□□□□□ -1.95
CSMD3-202ENST00000339701 ISG15P05161 165 aa2.86□□□□□ -1.95
CSMD3-202ENST00000339701 GATA3P23771 443 aa2.86□□□□□ -1.95
CSMD3-202ENST00000339701 DUTP33316 252 aaKnown RBP2.86□□□□□ -1.95
CSMD3-202ENST00000339701 UBE2IP63279 158 aaKnown RBP2.86□□□□□ -1.95
CSMD3-202ENST00000339701 ADIPOQQ15848 244 aa2.86□□□□□ -1.95
CSMD3-202ENST00000339701 PRTGQ2VWP7 1150 aa2.86□□□□□ -1.95
CSMD3-202ENST00000339701 B3GNT8Q7Z7M8 397 aa2.86□□□□□ -1.95
CSMD3-202ENST00000339701 CLDN19Q8N6F1 224 aa2.86□□□□□ -1.95
CSMD3-202ENST00000339701 OR52I2Q8NH67 350 aa2.86□□□□□ -1.95
CSMD3-202ENST00000339701 NT5CQ8TCD5 201 aa2.86□□□□□ -1.95
CSMD3-202ENST00000339701 R3HDM4Q96D70 268 aa2.86□□□□□ -1.95
CSMD3-202ENST00000339701 BEX4Q9NWD9 120 aaPredicted RBP2.86□□□□□ -1.95
CSMD3-202ENST00000339701 PAM16Q9Y3D7 125 aa2.86□□□□□ -1.95
CSMD3-202ENST00000339701 LY96Q9Y6Y9 160 aa2.86□□□□□ -1.95
CSMD3-202ENST00000339701 A0A087WUJ7 227 aa2.86□□□□□ -1.95
CSMD3-202ENST00000339701 ZNF205O95201 554 aa2.86□□□□□ -1.95
CSMD3-202ENST00000339701 NTN1O95631 604 aa2.86□□□□□ -1.95
CSMD3-202ENST00000339701 HPRT1P00492 218 aa2.86□□□□□ -1.95
CSMD3-202ENST00000339701 RPS11P62280 158 aaKnown RBP eCLIP2.86□□□□□ -1.95
CSMD3-202ENST00000339701 OR4D1Q15615 310 aa2.86□□□□□ -1.95
CSMD3-202ENST00000339701 SRSF7Q16629 238 aaKnown RBP eCLIP2.86□□□□□ -1.95
CSMD3-202ENST00000339701 TMEM95Q3KNT9 176 aa2.86□□□□□ -1.95
CSMD3-202ENST00000339701 GLIPR1L1Q6UWM5 242 aa2.86□□□□□ -1.95
CSMD3-202ENST00000339701 ALKAL2Q6UX46 152 aa2.86□□□□□ -1.95
CSMD3-202ENST00000339701 TMEM136Q6ZRR5 245 aa2.86□□□□□ -1.95
CSMD3-202ENST00000339701 OR5AK3PQ8NH89 298 aa2.86□□□□□ -1.95
CSMD3-202ENST00000339701 F2Z2F3 143 aa2.86□□□□□ -1.95
CSMD3-202ENST00000339701 TMPRSS2O15393 492 aa2.86□□□□□ -1.95
CSMD3-202ENST00000339701 ZG16O60844 167 aa2.86□□□□□ -1.95
CSMD3-202ENST00000339701 RBP4P02753 201 aa2.86□□□□□ -1.95
CSMD3-202ENST00000339701 SLC25A16P16260 332 aa2.86□□□□□ -1.95
CSMD3-202ENST00000339701 CEBPDP49716 269 aaPredicted RBP2.86□□□□□ -1.95
CSMD3-202ENST00000339701 FOXA1P55317 472 aa2.86□□□□□ -1.95
CSMD3-202ENST00000339701 DHRS2Q13268 280 aa2.86□□□□□ -1.95
CSMD3-202ENST00000339701 ZNF648Q5T619 568 aaPredicted RBP2.86□□□□□ -1.95
CSMD3-202ENST00000339701 CFAP77Q6ZQR2 320 aa2.86□□□□□ -1.95
CSMD3-202ENST00000339701 LAX1Q8IWV1 398 aa2.86□□□□□ -1.95
CSMD3-202ENST00000339701 GCSAMQ8N6F7 178 aa2.86□□□□□ -1.95
CSMD3-202ENST00000339701 OR2K2Q8NGT1 345 aa2.86□□□□□ -1.95
CSMD3-202ENST00000339701 ARRDC2Q8TBH0 407 aa2.86□□□□□ -1.95
CSMD3-202ENST00000339701 C8orf44Q96CB5 159 aa2.86□□□□□ -1.95
CSMD3-202ENST00000339701 MS4A6EQ96DS6 147 aa2.86□□□□□ -1.95
CSMD3-202ENST00000339701 RNF185Q96GF1 192 aa2.86□□□□□ -1.95
CSMD3-202ENST00000339701 DERL3Q96Q80 235 aa2.86□□□□□ -1.95
CSMD3-202ENST00000339701 AKIP1Q9NQ31 210 aa2.86□□□□□ -1.95
CSMD3-202ENST00000339701 PEMTQ9UBM1 199 aa2.86□□□□□ -1.95
CSMD3-202ENST00000339701 TMEFF2Q9UIK5 374 aaPredicted RBP2.86□□□□□ -1.95
CSMD3-202ENST00000339701 KLF2Q9Y5W3 355 aaPredicted RBP2.86□□□□□ -1.95
CSMD3-202ENST00000339701 H0Y980 276 aa2.86□□□□□ -1.95
CSMD3-202ENST00000339701 PRSS1P07477 247 aa2.86□□□□□ -1.95
CSMD3-202ENST00000339701 LINC00869P0C866 280 aa2.86□□□□□ -1.95
CSMD3-202ENST00000339701 SYPL1Q16563 259 aa2.86□□□□□ -1.95
CSMD3-202ENST00000339701 ZNF385BQ569K4 471 aa2.86□□□□□ -1.95
CSMD3-202ENST00000339701 C1QL4Q86Z23 238 aa2.86□□□□□ -1.95
CSMD3-202ENST00000339701 TTC9CQ8N5M4 171 aa2.86□□□□□ -1.95
CSMD3-202ENST00000339701 MAP1LC3AQ9H492 121 aa2.86□□□□□ -1.95
CSMD3-202ENST00000339701 PTGDR2Q9Y5Y4 395 aa2.86□□□□□ -1.95
CSMD3-202ENST00000339701 FAM72CH0Y354 149 aa2.86□□□□□ -1.95
CSMD3-202ENST00000339701 RAB29O14966 203 aa2.86□□□□□ -1.95
CSMD3-202ENST00000339701 HOXA3O43365 443 aaPredicted RBP2.86□□□□□ -1.95
CSMD3-202ENST00000339701 SLC2A10O95528 541 aa2.86□□□□□ -1.95
CSMD3-202ENST00000339701 ETHE1O95571 254 aa2.86□□□□□ -1.95
CSMD3-202ENST00000339701 MESTQ5EB52 335 aa2.86□□□□□ -1.95
CSMD3-202ENST00000339701 FAM72AQ5TYM5 149 aa2.86□□□□□ -1.95
CSMD3-202ENST00000339701 FAM72DQ6L9T8 149 aa2.86□□□□□ -1.95
CSMD3-202ENST00000339701 FAM72BQ86X60 149 aa2.86□□□□□ -1.95
Retrieved 100 of 20,778 RNA–protein pairs in 123.3 ms