RNA–Protein interactions for RNA: ENST00000338045.7

LIMS1-202, Transcript of LIM zinc finger domain containing 1, humanhuman

TSL 1 (best) BASIC

Gene LIMS1, Length 1,876 nt, Biotype protein coding, Subcellular localisation Cytosol .

Download Table  
RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
LIMS1-202ENST00000338045 GPR146Q96CH1 333 aa12.69□□□□□ -0.38
LIMS1-202ENST00000338045 RAB39BQ96DA2 213 aa12.69□□□□□ -0.38
LIMS1-202ENST00000338045 MYO18BQ8IUG5 2567 aa12.69□□□□□ -0.38
LIMS1-202ENST00000338045 ARID1AO14497 2285 aa12.69□□□□□ -0.38
LIMS1-202ENST00000338045 SPTAN1Q13813 2472 aaKnown RBP12.68□□□□□ -0.38
LIMS1-202ENST00000338045 A0A087X0M5 115 aa12.68□□□□□ -0.38
LIMS1-202ENST00000338045 A0A1B0GX30 115 aa12.68□□□□□ -0.38
LIMS1-202ENST00000338045 F5H0A9 414 aaPredicted RBP12.68□□□□□ -0.38
LIMS1-202ENST00000338045 ST8SIA3O43173 380 aa12.68□□□□□ -0.38
LIMS1-202ENST00000338045 RLN2P04090 185 aa12.68□□□□□ -0.38
LIMS1-202ENST00000338045 LINC00205P59089 165 aa12.68□□□□□ -0.38
LIMS1-202ENST00000338045 RPL39P5Q59GN2 51 aa12.68□□□□□ -0.38
LIMS1-202ENST00000338045 NCR3LG1Q68D85 454 aa12.68□□□□□ -0.38
LIMS1-202ENST00000338045 TEX261Q6UWH6 196 aa12.68□□□□□ -0.38
LIMS1-202ENST00000338045 C1orf229Q6ZS94 237 aaPredicted RBP12.68□□□□□ -0.38
LIMS1-202ENST00000338045 C8orf31Q8N9H6 132 aa12.68□□□□□ -0.38
LIMS1-202ENST00000338045 CD300LFQ8TDQ1 290 aa12.68□□□□□ -0.38
LIMS1-202ENST00000338045 AQP10Q96PS8 301 aa12.68□□□□□ -0.38
LIMS1-202ENST00000338045 PATZ1Q9HBE1 687 aaKnown RBP12.68□□□□□ -0.38
LIMS1-202ENST00000338045 POMT1Q9Y6A1 747 aa12.68□□□□□ -0.38
LIMS1-202ENST00000338045 U3KQ87 197 aa12.68□□□□□ -0.38
LIMS1-202ENST00000338045 UBR5O95071 2799 aaPredicted RBP12.68□□□□□ -0.38
LIMS1-202ENST00000338045 MALRD1Q5VYJ5 2156 aa12.68□□□□□ -0.38
LIMS1-202ENST00000338045 SAA2-SAA4A0A096LPE2 208 aa12.68□□□□□ -0.38
LIMS1-202ENST00000338045 A0A1W2PPE3 182 aa12.68□□□□□ -0.38
LIMS1-202ENST00000338045 M0R1X1 148 aa12.68□□□□□ -0.38
LIMS1-202ENST00000338045 SCGB1D2O95969 90 aa12.68□□□□□ -0.38
LIMS1-202ENST00000338045 SAA2P0DJI9 122 aaPredicted RBP12.68□□□□□ -0.38
LIMS1-202ENST00000338045 ID3Q02535 119 aa12.68□□□□□ -0.38
LIMS1-202ENST00000338045 SMCO1Q147U7 214 aa12.68□□□□□ -0.38
LIMS1-202ENST00000338045 PXDC1Q5TGL8 231 aa12.68□□□□□ -0.38
LIMS1-202ENST00000338045 ZNF767PQ75MW2 155 aa12.68□□□□□ -0.38
LIMS1-202ENST00000338045 ZNF596Q8TC21 504 aa12.68□□□□□ -0.38
LIMS1-202ENST00000338045 DDB2Q92466 427 aa12.68□□□□□ -0.38
LIMS1-202ENST00000338045 LSM5Q9Y4Y9 91 aaKnown RBP12.68□□□□□ -0.38
LIMS1-202ENST00000338045 YLPM1P49750 1951 aaKnown RBP12.67□□□□□ -0.38
LIMS1-202ENST00000338045 MSGN1A6NI15 193 aa12.67□□□□□ -0.38
LIMS1-202ENST00000338045 RBFOX2O43251 390 aaKnown RBP eCLIP12.67□□□□□ -0.38
LIMS1-202ENST00000338045 KCNAB3O43448 404 aa12.67□□□□□ -0.38
LIMS1-202ENST00000338045 P0C879 139 aa12.67□□□□□ -0.38
LIMS1-202ENST00000338045 NKX2-1P43699 371 aaPredicted RBP12.67□□□□□ -0.38
LIMS1-202ENST00000338045 GNG10P50151 68 aa12.67□□□□□ -0.38
LIMS1-202ENST00000338045 AKR1C2P52895 323 aa12.67□□□□□ -0.38
LIMS1-202ENST00000338045 OR2B11Q5JQS5 317 aa12.67□□□□□ -0.38
LIMS1-202ENST00000338045 Q6ZRM9 215 aa12.67□□□□□ -0.38
LIMS1-202ENST00000338045 FOXRED2Q8IWF2 684 aa12.67□□□□□ -0.38
LIMS1-202ENST00000338045 LYG1Q8N1E2 194 aa12.67□□□□□ -0.38
LIMS1-202ENST00000338045 LINC00311Q8N616 119 aa12.67□□□□□ -0.38
LIMS1-202ENST00000338045 C11orf1Q9H5F2 150 aa12.67□□□□□ -0.38
LIMS1-202ENST00000338045 RCL1Q9Y2P8 373 aaKnown RBP12.67□□□□□ -0.38
LIMS1-202ENST00000338045 DOCK11Q5JSL3 2073 aa12.66□□□□□ -0.38
LIMS1-202ENST00000338045 E5RGE8 158 aa12.66□□□□□ -0.38
LIMS1-202ENST00000338045 TOR1AO14656 332 aa12.66□□□□□ -0.38
LIMS1-202ENST00000338045 S1PR2O95136 353 aa12.66□□□□□ -0.38
LIMS1-202ENST00000338045 RBP4P02753 201 aa12.66□□□□□ -0.38
LIMS1-202ENST00000338045 IGHV1-8P0DP01 117 aa12.66□□□□□ -0.38
LIMS1-202ENST00000338045 ATF4P18848 351 aaPredicted RBP12.66□□□□□ -0.38
LIMS1-202ENST00000338045 GPR6P46095 362 aaPredicted RBP12.66□□□□□ -0.38
LIMS1-202ENST00000338045 LY6G5BQ8NDX9 201 aa12.66□□□□□ -0.38
LIMS1-202ENST00000338045 DMBX1Q8NFW5 382 aa12.66□□□□□ -0.38
LIMS1-202ENST00000338045 OR8H1Q8NGG4 311 aa12.66□□□□□ -0.38
LIMS1-202ENST00000338045 NSG2Q9Y328 171 aa12.66□□□□□ -0.38
LIMS1-202ENST00000338045 MMP24Q9Y5R2 645 aa12.66□□□□□ -0.38
LIMS1-202ENST00000338045 BCL2L11O43521 198 aa12.65□□□□□ -0.38
LIMS1-202ENST00000338045 CLN5O75503 358 aa12.65□□□□□ -0.38
LIMS1-202ENST00000338045 ATG12O94817 140 aa12.65□□□□□ -0.38
LIMS1-202ENST00000338045 ZNF816Q0VGE8 651 aaPredicted RBP12.65□□□□□ -0.38
LIMS1-202ENST00000338045 CXorf66Q5JRM2 361 aaPredicted RBP12.65□□□□□ -0.38
LIMS1-202ENST00000338045 RNASE11Q8TAA1 199 aaKnown RBP12.65□□□□□ -0.38
LIMS1-202ENST00000338045 PLEKHA2Q9HB19 425 aa12.65□□□□□ -0.38
LIMS1-202ENST00000338045 COA4Q9NYJ1 87 aa12.65□□□□□ -0.38
LIMS1-202ENST00000338045 A0A1W2PPH5 198 aa12.65□□□□□ -0.38
LIMS1-202ENST00000338045 A6NJY4 79 aa12.65□□□□□ -0.38
LIMS1-202ENST00000338045 KIAA1324LA8MWY0 1029 aaPredicted RBP12.65□□□□□ -0.38
LIMS1-202ENST00000338045 CFDP00746 253 aaPredicted RBP12.65□□□□□ -0.38
LIMS1-202ENST00000338045 HKR1P10072 659 aa12.65□□□□□ -0.38
LIMS1-202ENST00000338045 NUP62P37198 522 aaPredicted RBP12.65□□□□□ -0.38
LIMS1-202ENST00000338045 KIR2DS2P43631 304 aa12.65□□□□□ -0.38
LIMS1-202ENST00000338045 THBS3P49746 956 aa12.65□□□□□ -0.38
LIMS1-202ENST00000338045 IZUMO4Q1ZYL8 232 aa12.65□□□□□ -0.38
LIMS1-202ENST00000338045 ADTRPQ96IZ2 230 aa12.65□□□□□ -0.38
LIMS1-202ENST00000338045 NARFLQ9H6Q4 476 aa12.65□□□□□ -0.38
LIMS1-202ENST00000338045 ZC4H2Q9NQZ6 224 aa12.65□□□□□ -0.38
LIMS1-202ENST00000338045 CACNG5Q9UF02 275 aa12.65□□□□□ -0.38
LIMS1-202ENST00000338045 PRELID3BQ9Y3B1 194 aa12.65□□□□□ -0.38
LIMS1-202ENST00000338045 SESN1Q9Y6P5 492 aa12.65□□□□□ -0.38
LIMS1-202ENST00000338045 PPIAL4CA0A0B4J2A2 164 aa12.64□□□□□ -0.39
LIMS1-202ENST00000338045 KANTRA0A1W2PQU2 76 aa12.64□□□□□ -0.39
LIMS1-202ENST00000338045 ZNF98A6NK75 572 aa12.64□□□□□ -0.39
LIMS1-202ENST00000338045 PPIAL4GP0DN37 164 aa12.64□□□□□ -0.39
LIMS1-202ENST00000338045 EPHA1P21709 976 aa12.64□□□□□ -0.39
LIMS1-202ENST00000338045 RAB14P61106 215 aa12.64□□□□□ -0.39
LIMS1-202ENST00000338045 GNB2P62879 340 aa12.64□□□□□ -0.39
LIMS1-202ENST00000338045 ZNF833PQ6ZTB9 187 aa12.64□□□□□ -0.39
LIMS1-202ENST00000338045 S1PR3Q99500 378 aa12.64□□□□□ -0.39
LIMS1-202ENST00000338045 ZNRD1Q9P1U0 126 aa12.64□□□□□ -0.39
LIMS1-202ENST00000338045 KMT2BQ9UMN6 2715 aaPredicted RBP12.64□□□□□ -0.39
LIMS1-202ENST00000338045 C22orf46C9J442 243 aa12.63□□□□□ -0.39
LIMS1-202ENST00000338045 J3QR06 171 aa12.63□□□□□ -0.39
LIMS1-202ENST00000338045 FCGR3BO75015 233 aa12.63□□□□□ -0.39
Retrieved 100 of 20,778 RNA–protein pairs in 53.3 ms