RNA–Protein interactions for RNA: ENST00000336798.11

SDC3-201, Transcript of syndecan 3, humanhuman

TSL 1 (best) BASIC

Gene SDC3, Length 6,392 nt, Biotype protein coding, Subcellular localisation Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SDC3-201ENST00000336798 PUSL1Q8N0Z8 303 aaKnown RBP10.88□□□□□ -0.67
SDC3-201ENST00000336798 ZBTB34Q8NCN2 500 aa10.88□□□□□ -0.67
SDC3-201ENST00000336798 DOCK2Q92608 1830 aa10.88□□□□□ -0.67
SDC3-201ENST00000336798 HOGA1Q86XE5 327 aa10.88□□□□□ -0.67
SDC3-201ENST00000336798 ABHD12Q8N2K0 398 aa10.88□□□□□ -0.67
SDC3-201ENST00000336798 ZNF501Q96CX3 271 aaPredicted RBP10.88□□□□□ -0.67
SDC3-201ENST00000336798 LOC105371242A0A075B767 164 aa10.88□□□□□ -0.67
SDC3-201ENST00000336798 DLL1O00548 723 aa10.88□□□□□ -0.67
SDC3-201ENST00000336798 MGST3O14880 152 aa10.88□□□□□ -0.67
SDC3-201ENST00000336798 TSPAN13O95857 204 aa10.88□□□□□ -0.67
SDC3-201ENST00000336798 FABP2P12104 132 aa10.88□□□□□ -0.67
SDC3-201ENST00000336798 SHISA5Q8N114 240 aa10.88□□□□□ -0.67
SDC3-201ENST00000336798 PNKDQ8N490 385 aa10.88□□□□□ -0.67
SDC3-201ENST00000336798 SRSF12Q8WXF0 261 aaKnown RBP10.88□□□□□ -0.67
SDC3-201ENST00000336798 DNAJC4Q9NNZ3 241 aa10.88□□□□□ -0.67
SDC3-201ENST00000336798 OPN4Q9UHM6 478 aa10.88□□□□□ -0.67
SDC3-201ENST00000336798 C1QL1O75973 258 aa10.87□□□□□ -0.67
SDC3-201ENST00000336798 HOXD4P09016 255 aaPredicted RBP10.87□□□□□ -0.67
SDC3-201ENST00000336798 HOXA6P31267 233 aa10.87□□□□□ -0.67
SDC3-201ENST00000336798 TMEM177Q53S58 311 aa10.87□□□□□ -0.67
SDC3-201ENST00000336798 OR4C13Q8NGP0 309 aa10.87□□□□□ -0.67
SDC3-201ENST00000336798 ALX4Q9H161 411 aaPredicted RBP10.87□□□□□ -0.67
SDC3-201ENST00000336798 WNT5BQ9H1J7 359 aa10.87□□□□□ -0.67
SDC3-201ENST00000336798 TMEM238LA0A1B0GVL6 79 aa10.87□□□□□ -0.67
SDC3-201ENST00000336798 A6NJY4 79 aa10.87□□□□□ -0.67
SDC3-201ENST00000336798 RSPO4Q2I0M5 234 aaPredicted RBP10.87□□□□□ -0.67
SDC3-201ENST00000336798 FHL5Q5TD97 284 aa10.87□□□□□ -0.67
SDC3-201ENST00000336798 LSM10Q969L4 123 aaKnown RBP10.87□□□□□ -0.67
SDC3-201ENST00000336798 LRRC3BQ96PB8 259 aa10.87□□□□□ -0.67
SDC3-201ENST00000336798 IDI2-AS1Q9NZ38 188 aa10.87□□□□□ -0.67
SDC3-201ENST00000336798 TRIP11Q15643 1979 aa10.87□□□□□ -0.67
SDC3-201ENST00000336798 MUC21A0A0G2JKD1 596 aa10.87□□□□□ -0.67
SDC3-201ENST00000336798 MUC21A0A140T8X8 626 aa10.87□□□□□ -0.67
SDC3-201ENST00000336798 HIST1H1AQ02539 215 aaPredicted RBP10.87□□□□□ -0.67
SDC3-201ENST00000336798 COX19Q49B96 90 aa10.87□□□□□ -0.67
SDC3-201ENST00000336798 MUC21Q5SSG8 566 aa10.87□□□□□ -0.67
SDC3-201ENST00000336798 ATOH7Q8N100 152 aa10.87□□□□□ -0.67
SDC3-201ENST00000336798 PAPPA2Q9BXP8 1791 aa10.87□□□□□ -0.67
SDC3-201ENST00000336798 PKD1L3Q7Z443 1732 aa10.87□□□□□ -0.67
SDC3-201ENST00000336798 NPFFO15130 113 aa10.87□□□□□ -0.67
SDC3-201ENST00000336798 LDLRAD4O15165 306 aa10.87□□□□□ -0.67
SDC3-201ENST00000336798 ISG15P05161 165 aa10.87□□□□□ -0.67
SDC3-201ENST00000336798 UNC119Q13432 240 aa10.87□□□□□ -0.67
SDC3-201ENST00000336798 LCN2P80188 198 aa10.87□□□□□ -0.67
SDC3-201ENST00000336798 PLAC1Q9HBJ0 212 aa10.87□□□□□ -0.67
SDC3-201ENST00000336798 IGHV3OR16-8A0A075B7F1 116 aa10.86□□□□□ -0.67
SDC3-201ENST00000336798 FCARP24071 287 aa10.86□□□□□ -0.67
SDC3-201ENST00000336798 PRB3Q04118 309 aaPredicted RBP10.86□□□□□ -0.67
SDC3-201ENST00000336798 KIAA1644Q3SXP7 199 aa10.86□□□□□ -0.67
SDC3-201ENST00000336798 ITLN2Q8WWU7 325 aaPredicted RBP10.86□□□□□ -0.67
SDC3-201ENST00000336798 SCN9AQ15858 1988 aa10.86□□□□□ -0.67
SDC3-201ENST00000336798 KNL1Q8NG31 2342 aa10.86□□□□□ -0.67
SDC3-201ENST00000336798 FOXI3A8MTJ6 420 aaPredicted RBP10.86□□□□□ -0.67
SDC3-201ENST00000336798 MFAP4P55083 255 aa10.86□□□□□ -0.67
SDC3-201ENST00000336798 SUMO2P61956 95 aaKnown RBP10.86□□□□□ -0.67
SDC3-201ENST00000336798 CXorf66Q5JRM2 361 aaPredicted RBP10.86□□□□□ -0.67
SDC3-201ENST00000336798 MARVELD3Q96A59 401 aa10.86□□□□□ -0.67
SDC3-201ENST00000336798 PRDM6Q9NQX0 595 aa10.86□□□□□ -0.67
SDC3-201ENST00000336798 A8MWL6 223 aa10.86□□□□□ -0.67
SDC3-201ENST00000336798 GDF9O60383 454 aa10.86□□□□□ -0.67
SDC3-201ENST00000336798 TRGC2P03986 189 aa10.86□□□□□ -0.67
SDC3-201ENST00000336798 IFITM3Q01628 133 aa10.86□□□□□ -0.67
SDC3-201ENST00000336798 DCAF12L2Q5VW00 463 aa10.86□□□□□ -0.67
SDC3-201ENST00000336798 TMEM91Q6ZNR0 172 aa10.86□□□□□ -0.67
SDC3-201ENST00000336798 NUDT10Q8NFP7 164 aa10.86□□□□□ -0.67
SDC3-201ENST00000336798 DPH3P1Q9H4G8 78 aa10.86□□□□□ -0.67
SDC3-201ENST00000336798 SIRT4Q9Y6E7 314 aaPredicted RBP10.86□□□□□ -0.67
SDC3-201ENST00000336798 ST6GALNAC2Q9UJ37 374 aa10.86□□□□□ -0.67
SDC3-201ENST00000336798 PCM1Q15154 2024 aa10.86□□□□□ -0.67
SDC3-201ENST00000336798 PRR33A8MZF0 331 aa10.86□□□□□ -0.67
SDC3-201ENST00000336798 RBFOX2O43251 390 aaKnown RBP eCLIP10.86□□□□□ -0.67
SDC3-201ENST00000336798 TBL2Q9Y4P3 447 aaKnown RBP10.86□□□□□ -0.67
SDC3-201ENST00000336798 MOSP00540 346 aa10.85□□□□□ -0.67
SDC3-201ENST00000336798 FGF12P61328 243 aa10.85□□□□□ -0.67
SDC3-201ENST00000336798 GEMIN7Q9H840 131 aaKnown RBP10.85□□□□□ -0.67
SDC3-201ENST00000336798 SOX21Q9Y651 276 aaPredicted RBP10.85□□□□□ -0.67
SDC3-201ENST00000336798 RELQ04864 619 aaPredicted RBP10.85□□□□□ -0.67
SDC3-201ENST00000336798 DNAJC13O75165 2243 aa10.85□□□□□ -0.67
SDC3-201ENST00000336798 AMY1AP04745 511 aa10.85□□□□□ -0.67
SDC3-201ENST00000336798 MC5RP33032 325 aa10.85□□□□□ -0.67
SDC3-201ENST00000336798 MMP16P51512 607 aa10.85□□□□□ -0.67
SDC3-201ENST00000336798 PCSK4Q6UW60 755 aa10.85□□□□□ -0.67
SDC3-201ENST00000336798 MAP1LC3AQ9H492 121 aa10.85□□□□□ -0.67
SDC3-201ENST00000336798 RNF115Q9Y4L5 304 aa10.85□□□□□ -0.67
SDC3-201ENST00000336798 DSPPQ9NZW4 1301 aa10.85□□□□□ -0.67
SDC3-201ENST00000336798 ARL14EPLP0DKL9 152 aa10.85□□□□□ -0.67
SDC3-201ENST00000336798 BCL2P10415 239 aa10.85□□□□□ -0.67
SDC3-201ENST00000336798 ZG16O60844 167 aa10.85□□□□□ -0.67
SDC3-201ENST00000336798 CDX1P47902 265 aaPredicted RBP10.85□□□□□ -0.67
SDC3-201ENST00000336798 RARRES2Q99969 163 aa10.85□□□□□ -0.67
SDC3-201ENST00000336798 GCSAMQ8N6F7 178 aa10.84□□□□□ -0.67
SDC3-201ENST00000336798 STPG3Q8N7X2 389 aa10.84□□□□□ -0.67
SDC3-201ENST00000336798 AMELYQ99218 206 aa10.84□□□□□ -0.67
SDC3-201ENST00000336798 ZNF430Q9H8G1 570 aaPredicted RBP10.84□□□□□ -0.67
SDC3-201ENST00000336798 PRSS23O95084 383 aa10.84□□□□□ -0.67
SDC3-201ENST00000336798 CTAG1AP78358 180 aa10.84□□□□□ -0.67
SDC3-201ENST00000336798 LTBP4Q8N2S1 1624 aa10.84□□□□□ -0.67
SDC3-201ENST00000336798 OR1P1Q8NH06 330 aa10.84□□□□□ -0.67
SDC3-201ENST00000336798 MARS2Q96GW9 593 aaKnown RBP10.84□□□□□ -0.67
SDC3-201ENST00000336798 SRXN1Q9BYN0 137 aa10.84□□□□□ -0.67
Retrieved 100 of 20,778 RNA–protein pairs in 33.5 ms