RNA–Protein interactions for RNA: ENST00000325307.11

HMGB3-201, Transcript of high mobility group box 3, humanhuman

APPRIS P2 TSL 1 (best) BASIC

Gene HMGB3, Length 3,560 nt, Biotype protein coding, Subcellular localisation Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
HMGB3-201ENST00000325307 CORO2AQ92828 525 aa8.26□□□□□ -1.09
HMGB3-201ENST00000325307 PARP12Q9H0J9 701 aaKnown RBP8.26□□□□□ -1.09
HMGB3-201ENST00000325307 TAS2R3Q9NYW6 316 aa8.26□□□□□ -1.09
HMGB3-201ENST00000325307 RNF150Q9ULK6 438 aa8.26□□□□□ -1.09
HMGB3-201ENST00000325307 MED13LQ71F56 2210 aa8.26□□□□□ -1.09
HMGB3-201ENST00000325307 YLPM1P49750 1951 aaKnown RBP8.26□□□□□ -1.09
HMGB3-201ENST00000325307 PPIAL4CA0A0B4J2A2 164 aa8.26□□□□□ -1.09
HMGB3-201ENST00000325307 IGKV1D-13A0A0B4J2D9 117 aa8.26□□□□□ -1.09
HMGB3-201ENST00000325307 PPIAL4GP0DN37 164 aa8.26□□□□□ -1.09
HMGB3-201ENST00000325307 IGKV1-13P0DP09 117 aa8.26□□□□□ -1.09
HMGB3-201ENST00000325307 RPA2P15927 270 aa8.26□□□□□ -1.09
HMGB3-201ENST00000325307 ERVFRD-1P60508 538 aa8.26□□□□□ -1.09
HMGB3-201ENST00000325307 SURF2Q15527 256 aaPredicted RBP8.26□□□□□ -1.09
HMGB3-201ENST00000325307 CR1LQ2VPA4 569 aa8.26□□□□□ -1.09
HMGB3-201ENST00000325307 C10orf105Q8TEF2 133 aa8.26□□□□□ -1.09
HMGB3-201ENST00000325307 LEAP2Q969E1 77 aa8.26□□□□□ -1.09
HMGB3-201ENST00000325307 FAM212BQ9NTI7 297 aaPredicted RBP8.26□□□□□ -1.09
HMGB3-201ENST00000325307 IDI2-AS1Q9NZ38 188 aa8.26□□□□□ -1.09
HMGB3-201ENST00000325307 ONECUT1Q9UBC0 465 aa8.26□□□□□ -1.09
HMGB3-201ENST00000325307 RPUSD1Q9UJJ7 312 aaKnown RBP8.26□□□□□ -1.09
HMGB3-201ENST00000325307 CARHSP1Q9Y2V2 147 aaKnown RBP8.26□□□□□ -1.09
HMGB3-201ENST00000325307 DOCK11Q5JSL3 2073 aa8.26□□□□□ -1.09
HMGB3-201ENST00000325307 LOC105371242A0A075B767 164 aa8.26□□□□□ -1.09
HMGB3-201ENST00000325307 A0A1W2PPH5 198 aa8.26□□□□□ -1.09
HMGB3-201ENST00000325307 NPIPB11E5RHQ5 1161 aa8.26□□□□□ -1.09
HMGB3-201ENST00000325307 UBE2CO00762 179 aa8.26□□□□□ -1.09
HMGB3-201ENST00000325307 TUSC2O75896 110 aa8.26□□□□□ -1.09
HMGB3-201ENST00000325307 DUS4LO95620 317 aaKnown RBP8.26□□□□□ -1.09
HMGB3-201ENST00000325307 IGHV2-5P01817 119 aa8.26□□□□□ -1.09
HMGB3-201ENST00000325307 APOC3P02656 99 aa8.26□□□□□ -1.09
HMGB3-201ENST00000325307 HTD2P86397 168 aa8.26□□□□□ -1.09
HMGB3-201ENST00000325307 CLEC12BQ2HXU8 276 aa8.26□□□□□ -1.09
HMGB3-201ENST00000325307 ALKAL2Q6UX46 152 aa8.26□□□□□ -1.09
HMGB3-201ENST00000325307 LDLRAD3Q86YD5 345 aa8.26□□□□□ -1.09
HMGB3-201ENST00000325307 COQ8AQ8NI60 647 aa8.26□□□□□ -1.09
HMGB3-201ENST00000325307 RAB39BQ96DA2 213 aa8.26□□□□□ -1.09
HMGB3-201ENST00000325307 JPT1Q9UK76 154 aa8.26□□□□□ -1.09
HMGB3-201ENST00000325307 ANKRD17O75179 2603 aaKnown RBP8.26□□□□□ -1.09
HMGB3-201ENST00000325307 IGHV4-30-2A0A087WSY4 118 aa8.25□□□□□ -1.09
HMGB3-201ENST00000325307 FXYD6-FXYD2A0A087WZ82 144 aa8.25□□□□□ -1.09
HMGB3-201ENST00000325307 TEX13DA0A0J9YY54 714 aaPredicted RBP8.25□□□□□ -1.09
HMGB3-201ENST00000325307 CGB3P0DN86 165 aa8.25□□□□□ -1.09
HMGB3-201ENST00000325307 CGB7P0DN87 165 aa8.25□□□□□ -1.09
HMGB3-201ENST00000325307 TAS2R31P59538 309 aa8.25□□□□□ -1.09
HMGB3-201ENST00000325307 LCN2P80188 198 aa8.25□□□□□ -1.09
HMGB3-201ENST00000325307 DEFB113Q30KQ7 82 aa8.25□□□□□ -1.09
HMGB3-201ENST00000325307 LPCAT3Q6P1A2 487 aa8.25□□□□□ -1.09
HMGB3-201ENST00000325307 GSG1LQ6UXU4 331 aa8.25□□□□□ -1.09
HMGB3-201ENST00000325307 BPIFCQ8NFQ6 507 aa8.25□□□□□ -1.09
HMGB3-201ENST00000325307 CASTOR1Q8WTX7 329 aa8.25□□□□□ -1.09
HMGB3-201ENST00000325307 PFDN5Q99471 154 aa8.25□□□□□ -1.09
HMGB3-201ENST00000325307 CCL28Q9NRJ3 127 aa8.25□□□□□ -1.09
HMGB3-201ENST00000325307 PSG11Q9UQ72 335 aa8.25□□□□□ -1.09
HMGB3-201ENST00000325307 F2RL2O00254 374 aa8.25□□□□□ -1.09
HMGB3-201ENST00000325307 MMP23AO75900 390 aa8.25□□□□□ -1.09
HMGB3-201ENST00000325307 PIGPP57054 158 aa8.25□□□□□ -1.09
HMGB3-201ENST00000325307 DSCR9P59020 149 aa8.25□□□□□ -1.09
HMGB3-201ENST00000325307 ANKRD55Q3KP44 614 aa8.25□□□□□ -1.09
HMGB3-201ENST00000325307 RBMS3Q6XE24 437 aaKnown RBP8.25□□□□□ -1.09
HMGB3-201ENST00000325307 SEC22AQ96IW7 307 aa8.25□□□□□ -1.09
HMGB3-201ENST00000325307 BEX4Q9NWD9 120 aaPredicted RBP8.25□□□□□ -1.09
HMGB3-201ENST00000325307 MLXQ9UH92 298 aa8.25□□□□□ -1.09
HMGB3-201ENST00000325307 C22orf46C9J442 243 aa8.25□□□□□ -1.09
HMGB3-201ENST00000325307 F5H0A9 414 aaPredicted RBP8.25□□□□□ -1.09
HMGB3-201ENST00000325307 LY86O95711 162 aa8.25□□□□□ -1.09
HMGB3-201ENST00000325307 CTSDP07339 412 aaPredicted RBP8.25□□□□□ -1.09
HMGB3-201ENST00000325307 S100GP29377 79 aa8.25□□□□□ -1.09
HMGB3-201ENST00000325307 TMEM128Q5BJH2 165 aa8.25□□□□□ -1.09
HMGB3-201ENST00000325307 CMTM1Q8IZ96 169 aa8.25□□□□□ -1.09
HMGB3-201ENST00000325307 NARS2Q96I59 477 aaKnown RBP8.25□□□□□ -1.09
HMGB3-201ENST00000325307 OR2D2Q9H210 308 aa8.25□□□□□ -1.09
HMGB3-201ENST00000325307 LPAR2Q9HBW0 351 aa8.25□□□□□ -1.09
HMGB3-201ENST00000325307 GFOD1Q9NXC2 390 aa8.25□□□□□ -1.09
HMGB3-201ENST00000325307 A0A1W2PPE3 182 aa8.24□□□□□ -1.09
HMGB3-201ENST00000325307 RNF222A6NCQ9 220 aa8.24□□□□□ -1.09
HMGB3-201ENST00000325307 C5orf52A6NGY3 159 aa8.24□□□□□ -1.09
HMGB3-201ENST00000325307 TNFSF12O43508 249 aa8.24□□□□□ -1.09
HMGB3-201ENST00000325307 LIPFP07098 398 aa8.24□□□□□ -1.09
HMGB3-201ENST00000325307 UCP3P55916 312 aa8.24□□□□□ -1.09
HMGB3-201ENST00000325307 LOXL3P58215 753 aa8.24□□□□□ -1.09
HMGB3-201ENST00000325307 MORN2Q502X0 79 aa8.24□□□□□ -1.09
HMGB3-201ENST00000325307 RNASE11Q8TAA1 199 aaKnown RBP8.24□□□□□ -1.09
HMGB3-201ENST00000325307 SLC2A9Q9NRM0 540 aa8.24□□□□□ -1.09
HMGB3-201ENST00000325307 ZFP57Q9NU63 452 aa8.24□□□□□ -1.09
HMGB3-201ENST00000325307 IGHV4-61A0A0C4DH41 118 aa8.24□□□□□ -1.09
HMGB3-201ENST00000325307 RLN2P04090 185 aa8.24□□□□□ -1.09
HMGB3-201ENST00000325307 PAX1P15863 534 aa8.24□□□□□ -1.09
HMGB3-201ENST00000325307 ADCYAP1P18509 176 aa8.24□□□□□ -1.09
HMGB3-201ENST00000325307 GNRHRP30968 328 aa8.24□□□□□ -1.09
HMGB3-201ENST00000325307 SLC9A3R2Q15599 337 aa8.24□□□□□ -1.09
HMGB3-201ENST00000325307 HEPN1Q6WQI6 88 aa8.24□□□□□ -1.09
HMGB3-201ENST00000325307 ZNF818PQ6ZRF7 136 aa8.24□□□□□ -1.09
HMGB3-201ENST00000325307 PUSL1Q8N0Z8 303 aaKnown RBP8.24□□□□□ -1.09
HMGB3-201ENST00000325307 CCDC71LQ8N9Z2 235 aa8.24□□□□□ -1.09
HMGB3-201ENST00000325307 PPP1R1CQ8WVI7 109 aa8.24□□□□□ -1.09
HMGB3-201ENST00000325307 RTN4IP1Q8WWV3 396 aaPredicted RBP8.24□□□□□ -1.09
HMGB3-201ENST00000325307 SUCNR1Q9BXA5 334 aa8.24□□□□□ -1.09
HMGB3-201ENST00000325307 hCG_1809904A0A1W2PP81 198 aa8.23□□□□□ -1.09
HMGB3-201ENST00000325307 A0A1W2PPE2 198 aa8.23□□□□□ -1.09
HMGB3-201ENST00000325307 A0A1W2PR64 198 aa8.23□□□□□ -1.09
Retrieved 100 of 20,778 RNA–protein pairs in 114.1 ms