RNA–Protein interactions for RNA: ENST00000324554.9

USHBP1-202, Transcript of USH1 protein network component harmonin binding protein 1, humanhuman

TSL 2

Gene USHBP1, Length 2,402 nt, Biotype nonsense mediated decay, Subcellular localisation Cytoplasm, Cytosol, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
USHBP1-202ENST00000324554 WDR31Q8NA23 367 aa13.45□□□□□ -0.26
USHBP1-202ENST00000324554 OR52L2PQ8NGH6 319 aa13.45□□□□□ -0.26
USHBP1-202ENST00000324554 GPR61Q9BZJ8 451 aa13.45□□□□□ -0.26
USHBP1-202ENST00000324554 TMEM242Q9NWH2 141 aa13.45□□□□□ -0.26
USHBP1-202ENST00000324554 VAX2Q9UIW0 290 aa13.45□□□□□ -0.26
USHBP1-202ENST00000324554 USF3Q68DE3 2245 aa13.45□□□□□ -0.26
USHBP1-202ENST00000324554 KIR2DP1A0A0G2JNF4 349 aaPredicted RBP13.45□□□□□ -0.26
USHBP1-202ENST00000324554 HBZP02008 142 aa13.45□□□□□ -0.26
USHBP1-202ENST00000324554 CD55P08174 381 aa13.45□□□□□ -0.26
USHBP1-202ENST00000324554 IL2RGP31785 369 aa13.45□□□□□ -0.26
USHBP1-202ENST00000324554 EIF4EBP1Q13541 118 aaPredicted RBP13.45□□□□□ -0.26
USHBP1-202ENST00000324554 ACSF3Q4G176 576 aaPredicted RBP13.45□□□□□ -0.26
USHBP1-202ENST00000324554 WDR25Q64LD2 544 aaPredicted RBP13.45□□□□□ -0.26
USHBP1-202ENST00000324554 MRGPRGQ86SM5 289 aa13.45□□□□□ -0.26
USHBP1-202ENST00000324554 C1orf87Q8N0U7 546 aa13.45□□□□□ -0.26
USHBP1-202ENST00000324554 ZBTB34Q8NCN2 500 aa13.45□□□□□ -0.26
USHBP1-202ENST00000324554 OR10D4PQ8NGN7 298 aa13.45□□□□□ -0.26
USHBP1-202ENST00000324554 OR13D1Q8NGV5 346 aa13.45□□□□□ -0.26
USHBP1-202ENST00000324554 COQ2Q96H96 371 aa13.45□□□□□ -0.26
USHBP1-202ENST00000324554 P2RX4Q99571 388 aa13.45□□□□□ -0.26
USHBP1-202ENST00000324554 RP1L1Q8IWN7 2480 aaPredicted RBP13.45□□□□□ -0.26
USHBP1-202ENST00000324554 OOEPA6NGQ2 149 aa13.44□□□□□ -0.26
USHBP1-202ENST00000324554 HMGB3O15347 200 aaKnown RBP13.44□□□□□ -0.26
USHBP1-202ENST00000324554 CLDN1O95832 211 aa13.44□□□□□ -0.26
USHBP1-202ENST00000324554 TFF1P04155 84 aa13.44□□□□□ -0.26
USHBP1-202ENST00000324554 HOXC12P31275 282 aa13.44□□□□□ -0.26
USHBP1-202ENST00000324554 TNFRSF9Q07011 255 aa13.44□□□□□ -0.26
USHBP1-202ENST00000324554 C4orf17Q53FE4 359 aa13.44□□□□□ -0.26
USHBP1-202ENST00000324554 PRAMEF6Q5VXH4 476 aa13.44□□□□□ -0.26
USHBP1-202ENST00000324554 TMEM14EPQ6UXP3 125 aa13.44□□□□□ -0.26
USHBP1-202ENST00000324554 ACP7Q6ZNF0 438 aa13.44□□□□□ -0.26
USHBP1-202ENST00000324554 LURAP1LQ8IV03 231 aa13.44□□□□□ -0.26
USHBP1-202ENST00000324554 HIST3H2BBQ8N257 126 aa13.44□□□□□ -0.26
USHBP1-202ENST00000324554 C9orf106Q8NAJ2 232 aa13.44□□□□□ -0.26
USHBP1-202ENST00000324554 PARD6GQ9BYG4 376 aaPredicted RBP13.44□□□□□ -0.26
USHBP1-202ENST00000324554 DMRT1Q9Y5R6 373 aa13.44□□□□□ -0.26
USHBP1-202ENST00000324554 SEC14L6B5MCN3 397 aa13.44□□□□□ -0.26
USHBP1-202ENST00000324554 PHOX2AO14813 284 aa13.44□□□□□ -0.26
USHBP1-202ENST00000324554 ZNF737O75373 536 aa13.44□□□□□ -0.26
USHBP1-202ENST00000324554 G6PCP35575 357 aa13.44□□□□□ -0.26
USHBP1-202ENST00000324554 CD81P60033 236 aa13.44□□□□□ -0.26
USHBP1-202ENST00000324554 NKX6-1P78426 367 aaPredicted RBP13.44□□□□□ -0.26
USHBP1-202ENST00000324554 WDR82Q6UXN9 313 aa13.44□□□□□ -0.26
USHBP1-202ENST00000324554 ZNF808Q8N4W9 903 aaPredicted RBP13.44□□□□□ -0.26
USHBP1-202ENST00000324554 CXXC4Q9H2H0 198 aa13.44□□□□□ -0.26
USHBP1-202ENST00000324554 HSPB7Q9UBY9 170 aa13.44□□□□□ -0.26
USHBP1-202ENST00000324554 DOCK11Q5JSL3 2073 aa13.44□□□□□ -0.26
USHBP1-202ENST00000324554 PPP1R2P9O14990 202 aa13.43□□□□□ -0.26
USHBP1-202ENST00000324554 KRASP01116 189 aa13.43□□□□□ -0.26
USHBP1-202ENST00000324554 P0C879 139 aa13.43□□□□□ -0.26
USHBP1-202ENST00000324554 MDKP21741 143 aaPredicted RBP13.43□□□□□ -0.26
USHBP1-202ENST00000324554 ZNF816Q0VGE8 651 aaPredicted RBP13.43□□□□□ -0.26
USHBP1-202ENST00000324554 ACSM6Q6P461 480 aa13.43□□□□□ -0.26
USHBP1-202ENST00000324554 MRGPRDQ8TDS7 321 aa13.43□□□□□ -0.26
USHBP1-202ENST00000324554 LHX4Q969G2 390 aa13.43□□□□□ -0.26
USHBP1-202ENST00000324554 PINX1Q96BK5 328 aaKnown RBP13.43□□□□□ -0.26
USHBP1-202ENST00000324554 FZR1Q9UM11 496 aa13.43□□□□□ -0.26
USHBP1-202ENST00000324554 PRR14LQ5THK1 2151 aa13.43□□□□□ -0.26
USHBP1-202ENST00000324554 CACNA1DQ01668 2161 aa13.43□□□□□ -0.26
USHBP1-202ENST00000324554 PTBP3O95758 552 aaKnown RBP13.43□□□□□ -0.26
USHBP1-202ENST00000324554 GABRA2P47869 451 aa13.43□□□□□ -0.26
USHBP1-202ENST00000324554 BRWD1-AS2P59051 145 aa13.43□□□□□ -0.26
USHBP1-202ENST00000324554 ZNF383Q8NA42 475 aa13.43□□□□□ -0.26
USHBP1-202ENST00000324554 C1orf162Q8NEQ5 155 aaPredicted RBP13.43□□□□□ -0.26
USHBP1-202ENST00000324554 PRR7Q8TB68 274 aa13.43□□□□□ -0.26
USHBP1-202ENST00000324554 UFSP2Q9NUQ7 469 aa13.43□□□□□ -0.26
USHBP1-202ENST00000324554 CLN8Q9UBY8 286 aa13.43□□□□□ -0.26
USHBP1-202ENST00000324554 ZMAT5Q9UDW3 170 aaKnown RBP13.43□□□□□ -0.26
USHBP1-202ENST00000324554 AQP7O14520 342 aa13.42□□□□□ -0.26
USHBP1-202ENST00000324554 TIMM8AO60220 97 aaPredicted RBP13.42□□□□□ -0.26
USHBP1-202ENST00000324554 S1PR2O95136 353 aa13.42□□□□□ -0.26
USHBP1-202ENST00000324554 CECR9P0C854 216 aa13.42□□□□□ -0.26
USHBP1-202ENST00000324554 C9orf152Q5JTZ5 239 aa13.42□□□□□ -0.26
USHBP1-202ENST00000324554 NINJ1Q92982 152 aa13.42□□□□□ -0.26
USHBP1-202ENST00000324554 MSL2Q9HCI7 577 aa13.42□□□□□ -0.26
USHBP1-202ENST00000324554 SLC39A9Q9NUM3 307 aa13.42□□□□□ -0.26
USHBP1-202ENST00000324554 METRNQ9UJH8 293 aa13.42□□□□□ -0.26
USHBP1-202ENST00000324554 ODAMA1E959 279 aa13.42□□□□□ -0.26
USHBP1-202ENST00000324554 KITLGP21583 273 aa13.42□□□□□ -0.26
USHBP1-202ENST00000324554 SSTR5P35346 364 aa13.42□□□□□ -0.26
USHBP1-202ENST00000324554 FOXF2Q12947 444 aa13.42□□□□□ -0.26
USHBP1-202ENST00000324554 CATR1Q13166 79 aa13.42□□□□□ -0.26
USHBP1-202ENST00000324554 ZZEF1O43149 2961 aa13.41□□□□□ -0.26
USHBP1-202ENST00000324554 TRBV24-1A0A075B6N3 115 aa13.41□□□□□ -0.26
USHBP1-202ENST00000324554 C17orf98A8MV24 154 aa13.41□□□□□ -0.26
USHBP1-202ENST00000324554 FABP6P51161 128 aa13.41□□□□□ -0.26
USHBP1-202ENST00000324554 RPS16P62249 146 aaKnown RBP13.41□□□□□ -0.26
USHBP1-202ENST00000324554 MEF2BQ02080 365 aaPredicted RBP13.41□□□□□ -0.26
USHBP1-202ENST00000324554 COL10A1Q03692 680 aa13.41□□□□□ -0.26
USHBP1-202ENST00000324554 MSMO1Q15800 293 aa13.41□□□□□ -0.26
USHBP1-202ENST00000324554 BTNL3Q6UXE8 466 aa13.41□□□□□ -0.26
USHBP1-202ENST00000324554 TPRX1Q8N7U7 411 aa13.41□□□□□ -0.26
USHBP1-202ENST00000324554 SMIM7Q9BQ49 75 aa13.41□□□□□ -0.26
USHBP1-202ENST00000324554 SLC25A22Q9H936 323 aa13.41□□□□□ -0.26
USHBP1-202ENST00000324554 LRRC30A6NM36 301 aa13.41□□□□□ -0.26
USHBP1-202ENST00000324554 IFNA1P01562 189 aa13.41□□□□□ -0.26
USHBP1-202ENST00000324554 CENPVQ7Z7K6 275 aaPredicted RBP13.41□□□□□ -0.26
USHBP1-202ENST00000324554 RBMXL3Q8N7X1 1067 aaKnown RBP13.41□□□□□ -0.26
USHBP1-202ENST00000324554 OR13A1Q8NGR1 328 aa13.41□□□□□ -0.26
USHBP1-202ENST00000324554 ELOA3CA0A087WX78 387 aaPredicted RBP13.4□□□□□ -0.26
Retrieved 100 of 20,778 RNA–protein pairs in 70.1 ms