RNA–Protein interactions for RNA: ENST00000308271.13

USP48-201, Transcript of ubiquitin specific peptidase 48, humanhuman

APPRIS P1 TSL 1 (best) BASIC

Gene USP48, Length 4,595 nt, Biotype protein coding, Subcellular localisation Endoplasmic reticulum, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
USP48-201ENST00000308271 ZNF124Q15973 351 aa16.54■□□□□ 0.24
USP48-201ENST00000308271 OR52L2PQ8NGH6 319 aa16.54■□□□□ 0.24
USP48-201ENST00000308271 BARX1Q9HBU1 254 aaPredicted RBP16.54■□□□□ 0.24
USP48-201ENST00000308271 IL36RNQ9UBH0 155 aa16.54■□□□□ 0.24
USP48-201ENST00000308271 PLXNA3P51805 1871 aa16.54■□□□□ 0.24
USP48-201ENST00000308271 SHISA7A6NL88 538 aa16.54■□□□□ 0.24
USP48-201ENST00000308271 CSN3P07498 182 aa16.54■□□□□ 0.24
USP48-201ENST00000308271 CCL4P13236 92 aa16.54■□□□□ 0.24
USP48-201ENST00000308271 CCL20P78556 96 aa16.54■□□□□ 0.24
USP48-201ENST00000308271 IBA57Q5T440 356 aaKnown RBP16.54■□□□□ 0.24
USP48-201ENST00000308271 PQLC2Q6ZP29 291 aa16.54■□□□□ 0.24
USP48-201ENST00000308271 MISP3Q96FF7 219 aa16.54■□□□□ 0.24
USP48-201ENST00000308271 WDR90Q96KV7 1748 aa16.54■□□□□ 0.24
USP48-201ENST00000308271 NEURL1O76050 574 aa16.54■□□□□ 0.24
USP48-201ENST00000308271 MIC13Q5XKP0 118 aa16.54■□□□□ 0.24
USP48-201ENST00000308271 WDYHV1Q96HA8 205 aa16.54■□□□□ 0.24
USP48-201ENST00000308271 GAL3ST2Q9H3Q3 398 aa16.54■□□□□ 0.24
USP48-201ENST00000308271 GLRX2Q9NS18 164 aa16.54■□□□□ 0.24
USP48-201ENST00000308271 TMEM242Q9NWH2 141 aa16.54■□□□□ 0.24
USP48-201ENST00000308271 RNF24Q9Y225 148 aa16.54■□□□□ 0.24
USP48-201ENST00000308271 CFPP27918 469 aa16.53■□□□□ 0.24
USP48-201ENST00000308271 FBXW9Q5XUX1 488 aa16.53■□□□□ 0.24
USP48-201ENST00000308271 ATG101Q9BSB4 218 aa16.53■□□□□ 0.24
USP48-201ENST00000308271 COX5BP10606 129 aa16.53■□□□□ 0.24
USP48-201ENST00000308271 HIST1H2BLQ99880 126 aa16.53■□□□□ 0.24
USP48-201ENST00000308271 WNT16Q9UBV4 365 aa16.53■□□□□ 0.24
USP48-201ENST00000308271 A6NDN8 102 aa16.53■□□□□ 0.24
USP48-201ENST00000308271 TMEM170AQ8WVE7 144 aa16.53■□□□□ 0.24
USP48-201ENST00000308271 OR2J1Q9GZK6 312 aa16.53■□□□□ 0.24
USP48-201ENST00000308271 TRBV24-1A0A075B6N3 115 aa16.53■□□□□ 0.24
USP48-201ENST00000308271 J3QR06 171 aa16.53■□□□□ 0.24
USP48-201ENST00000308271 LYL1P12980 280 aa16.53■□□□□ 0.24
USP48-201ENST00000308271 MDP1Q86V88 176 aa16.53■□□□□ 0.24
USP48-201ENST00000308271 ZCCHC14Q8WYQ9 949 aaKnown RBP16.53■□□□□ 0.24
USP48-201ENST00000308271 SPSB4Q96A44 273 aa16.53■□□□□ 0.24
USP48-201ENST00000308271 hCG_38984A0A1B0GV85 526 aa16.52■□□□□ 0.24
USP48-201ENST00000308271 FAM87AP0C7U9 286 aa16.52■□□□□ 0.24
USP48-201ENST00000308271 COL8A1P27658 744 aa16.52■□□□□ 0.24
USP48-201ENST00000308271 MAGEA5P43359 124 aa16.52■□□□□ 0.24
USP48-201ENST00000308271 BPIFA4PQ86YQ2 179 aa16.52■□□□□ 0.24
USP48-201ENST00000308271 MMD2Q8IY49 270 aa16.52■□□□□ 0.24
USP48-201ENST00000308271 AHCTF1Q8WYP5 2266 aa16.52■□□□□ 0.24
USP48-201ENST00000308271 C3orf80F5H4A9 247 aa16.52■□□□□ 0.24
USP48-201ENST00000308271 ARL14EPLP0DKL9 152 aa16.52■□□□□ 0.24
USP48-201ENST00000308271 LGALS4P56470 323 aa16.52■□□□□ 0.24
USP48-201ENST00000308271 STPG1Q5TH74 334 aa16.52■□□□□ 0.24
USP48-201ENST00000308271 A0A1W2PPE3 182 aa16.52■□□□□ 0.23
USP48-201ENST00000308271 PYY3Q5JQD4 70 aa16.52■□□□□ 0.23
USP48-201ENST00000308271 C10orf113Q5VZT2 155 aa16.52■□□□□ 0.23
USP48-201ENST00000308271 DRAM1Q8N682 238 aa16.52■□□□□ 0.23
USP48-201ENST00000308271 ZNF525Q8N782 197 aa16.52■□□□□ 0.23
USP48-201ENST00000308271 SOD3P08294 240 aa16.52■□□□□ 0.23
USP48-201ENST00000308271 RPL23P62829 140 aaKnown RBP16.52■□□□□ 0.23
USP48-201ENST00000308271 ID3Q02535 119 aa16.52■□□□□ 0.23
USP48-201ENST00000308271 RTP5Q14D33 572 aa16.52■□□□□ 0.23
USP48-201ENST00000308271 LEMD1Q68G75 181 aa16.52■□□□□ 0.23
USP48-201ENST00000308271 OR4D5Q8NGN0 318 aa16.52■□□□□ 0.23
USP48-201ENST00000308271 OR2T6Q8NHC8 308 aa16.52■□□□□ 0.23
USP48-201ENST00000308271 NDUFB3O43676 98 aa16.51■□□□□ 0.23
USP48-201ENST00000308271 CELA2AP08217 269 aa16.51■□□□□ 0.23
USP48-201ENST00000308271 RIGQ13278 110 aa16.51■□□□□ 0.23
USP48-201ENST00000308271 OR10S1Q8NGN2 331 aa16.51■□□□□ 0.23
USP48-201ENST00000308271 TMEM45BQ96B21 275 aa16.51■□□□□ 0.23
USP48-201ENST00000308271 TMEM11P17152 192 aa16.51■□□□□ 0.23
USP48-201ENST00000308271 CTAG1AP78358 180 aa16.51■□□□□ 0.23
USP48-201ENST00000308271 RBPJQ06330 500 aa16.51■□□□□ 0.23
USP48-201ENST00000308271 LRRC10Q5BKY1 277 aa16.51■□□□□ 0.23
USP48-201ENST00000308271 C12orf54Q6X4T0 127 aa16.51■□□□□ 0.23
USP48-201ENST00000308271 OR1L1Q8NH94 360 aa16.51■□□□□ 0.23
USP48-201ENST00000308271 MAFAQ8NHW3 353 aaPredicted RBP16.51■□□□□ 0.23
USP48-201ENST00000308271 RTN4RQ9BZR6 473 aa16.51■□□□□ 0.23
USP48-201ENST00000308271 PTPRDP23468 1912 aa16.51■□□□□ 0.23
USP48-201ENST00000308271 IGKV1D-8A0A087WSZ0 117 aa16.51■□□□□ 0.23
USP48-201ENST00000308271 TNFSF15O95150 251 aa16.51■□□□□ 0.23
USP48-201ENST00000308271 CXCL1P09341 107 aa16.51■□□□□ 0.23
USP48-201ENST00000308271 CTSSP25774 331 aa16.51■□□□□ 0.23
USP48-201ENST00000308271 PPOXP50336 477 aa16.51■□□□□ 0.23
USP48-201ENST00000308271 TMEM265A0A087WTH1 108 aa16.5■□□□□ 0.23
USP48-201ENST00000308271 IFITM10A6NMD0 228 aa16.5■□□□□ 0.23
USP48-201ENST00000308271 KLF3P57682 345 aaPredicted RBP16.5■□□□□ 0.23
USP48-201ENST00000308271 CT55Q8WUE5 264 aa16.5■□□□□ 0.23
USP48-201ENST00000308271 RBP4P02753 201 aa16.5■□□□□ 0.23
USP48-201ENST00000308271 CBLN1P23435 193 aa16.5■□□□□ 0.23
USP48-201ENST00000308271 FHL1Q13642 323 aa16.5■□□□□ 0.23
USP48-201ENST00000308271 INO80CQ6PI98 192 aaPredicted RBP16.5■□□□□ 0.23
USP48-201ENST00000308271 ZNF319Q9P2F9 582 aa16.5■□□□□ 0.23
USP48-201ENST00000308271 SYNGR3O43761 229 aa16.5■□□□□ 0.23
USP48-201ENST00000308271 EGR1P18146 543 aa16.5■□□□□ 0.23
USP48-201ENST00000308271 SRIP30626 198 aa16.5■□□□□ 0.23
USP48-201ENST00000308271 SLC25A53Q5H9E4 307 aa16.5■□□□□ 0.23
USP48-201ENST00000308271 OR2M7Q8NG81 312 aa16.5■□□□□ 0.23
USP48-201ENST00000308271 OR1B1Q8NGR6 318 aa16.5■□□□□ 0.23
USP48-201ENST00000308271 SEBOXQ9HB31 216 aaPredicted RBP16.5■□□□□ 0.23
USP48-201ENST00000308271 RTTNQ86VV8 2226 aa16.5■□□□□ 0.23
USP48-201ENST00000308271 IGHV1-45A0A0A0MS14 117 aa16.5■□□□□ 0.23
USP48-201ENST00000308271 MARCH11A6NNE9 402 aa16.5■□□□□ 0.23
USP48-201ENST00000308271 A8MWL6 223 aa16.5■□□□□ 0.23
USP48-201ENST00000308271 ZNF83P51522 516 aa16.5■□□□□ 0.23
USP48-201ENST00000308271 S1PR2O95136 353 aa16.49■□□□□ 0.23
USP48-201ENST00000308271 AMY1AP04745 511 aa16.49■□□□□ 0.23
Retrieved 100 of 20,778 RNA–protein pairs in 26.9 ms