RNA–Protein interactions for RNA: ENST00000253024.9

TRIM28-201, Transcript of tripartite motif containing 28, humanhuman

APPRIS P1 TSL 1 (best) BASIC

Gene TRIM28, Length 2,960 nt, Biotype protein coding, Subcellular localisation Cytosol, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
TRIM28-201ENST00000253024 LRRC75BQ2VPJ9 315 aa17.86■□□□□ 0.45
TRIM28-201ENST00000253024 OR51G1Q8NGK1 321 aa17.86■□□□□ 0.45
TRIM28-201ENST00000253024 PRO1933Q9H354 126 aa17.86■□□□□ 0.45
TRIM28-201ENST00000253024 CSMD1Q96PZ7 3565 aa17.86■□□□□ 0.45
TRIM28-201ENST00000253024 ABCA1O95477 2261 aa17.86■□□□□ 0.45
TRIM28-201ENST00000253024 DUXBA0A1W2PPF3 345 aa17.86■□□□□ 0.45
TRIM28-201ENST00000253024 ANKHD1-EIF4EBP3H7C0V5 636 aaPredicted RBP17.86■□□□□ 0.45
TRIM28-201ENST00000253024 HOXC12P31275 282 aa17.86■□□□□ 0.45
TRIM28-201ENST00000253024 PRSS8Q16651 343 aa17.86■□□□□ 0.45
TRIM28-201ENST00000253024 FER1L6-AS2Q96M78 137 aa17.86■□□□□ 0.45
TRIM28-201ENST00000253024 TRAV38-1A0A0B4J264 116 aa17.85■□□□□ 0.45
TRIM28-201ENST00000253024 BTBD17A6NE02 478 aa17.85■□□□□ 0.45
TRIM28-201ENST00000253024 C21orf140B9A014 251 aa17.85■□□□□ 0.45
TRIM28-201ENST00000253024 FFAR4Q5NUL3 377 aa17.85■□□□□ 0.45
TRIM28-201ENST00000253024 LRP11Q86VZ4 500 aa17.85■□□□□ 0.45
TRIM28-201ENST00000253024 ZNF383Q8NA42 475 aa17.85■□□□□ 0.45
TRIM28-201ENST00000253024 EDDM3BP56851 147 aa17.85■□□□□ 0.45
TRIM28-201ENST00000253024 OR2Z1Q8NG97 314 aa17.85■□□□□ 0.45
TRIM28-201ENST00000253024 IL22RA2Q969J5 263 aa17.85■□□□□ 0.45
TRIM28-201ENST00000253024 OPN3Q9H1Y3 402 aaPredicted RBP17.85■□□□□ 0.45
TRIM28-201ENST00000253024 PATZ1Q9HBE1 687 aaKnown RBP17.85■□□□□ 0.45
TRIM28-201ENST00000253024 A0A0U1RQK1 487 aa17.85■□□□□ 0.45
TRIM28-201ENST00000253024 TGFBR3Q03167 851 aa17.85■□□□□ 0.45
TRIM28-201ENST00000253024 YLPM1P49750 1951 aaKnown RBP17.85■□□□□ 0.45
TRIM28-201ENST00000253024 SPAARA0A1B0GVQ0 90 aa17.84■□□□□ 0.45
TRIM28-201ENST00000253024 WT1P19544 449 aaPredicted RBP17.84■□□□□ 0.45
TRIM28-201ENST00000253024 ERVK11-1P61568 191 aa17.84■□□□□ 0.45
TRIM28-201ENST00000253024 C9orf106Q8NAJ2 232 aa17.84■□□□□ 0.45
TRIM28-201ENST00000253024 A0A1W2PPQ1 181 aa17.84■□□□□ 0.45
TRIM28-201ENST00000253024 TMEM30CPA0ZSE6 113 aa17.84■□□□□ 0.45
TRIM28-201ENST00000253024 C1QTNF9BB2RNN3 333 aa17.84■□□□□ 0.45
TRIM28-201ENST00000253024 PAGE4O60829 102 aa17.84■□□□□ 0.45
TRIM28-201ENST00000253024 FCGR3BO75015 233 aa17.84■□□□□ 0.45
TRIM28-201ENST00000253024 OPN1MWP04001 364 aa17.84■□□□□ 0.45
TRIM28-201ENST00000253024 OPN1MW2P0DN77 364 aa17.84■□□□□ 0.45
TRIM28-201ENST00000253024 OPN1MW3P0DN78 364 aa17.84■□□□□ 0.45
TRIM28-201ENST00000253024 H2BFWTQ7Z2G1 175 aa17.84■□□□□ 0.45
TRIM28-201ENST00000253024 ZNRF1Q8ND25 227 aa17.84■□□□□ 0.45
TRIM28-201ENST00000253024 OR10G4Q8NGN3 311 aa17.84■□□□□ 0.45
TRIM28-201ENST00000253024 OR10G9Q8NGN4 311 aa17.84■□□□□ 0.45
TRIM28-201ENST00000253024 OR10G7Q8NGN6 311 aa17.84■□□□□ 0.45
TRIM28-201ENST00000253024 DTD1Q8TEA8 209 aa17.84■□□□□ 0.45
TRIM28-201ENST00000253024 GAR1Q9NY12 217 aaKnown RBP17.84■□□□□ 0.45
TRIM28-201ENST00000253024 LAMP3Q9UQV4 416 aa17.84■□□□□ 0.45
TRIM28-201ENST00000253024 IFNL4K9M1U5 179 aa17.83■□□□□ 0.45
TRIM28-201ENST00000253024 CEACAM1P13688 526 aa17.83■□□□□ 0.45
TRIM28-201ENST00000253024 CD81P60033 236 aa17.83■□□□□ 0.45
TRIM28-201ENST00000253024 RPL39P5Q59GN2 51 aa17.83■□□□□ 0.44
TRIM28-201ENST00000253024 TMEM41BQ5BJD5 291 aa17.83■□□□□ 0.44
TRIM28-201ENST00000253024 C16orf82Q7Z2V1 217 aa17.83■□□□□ 0.44
TRIM28-201ENST00000253024 DEFB108BQ8NET1 73 aa17.83■□□□□ 0.44
TRIM28-201ENST00000253024 HINT2Q9BX68 163 aa17.83■□□□□ 0.44
TRIM28-201ENST00000253024 GNG12Q9UBI6 72 aa17.83■□□□□ 0.44
TRIM28-201ENST00000253024 A0A1B0GW64 132 aa17.82■□□□□ 0.44
TRIM28-201ENST00000253024 HOXA5P20719 270 aa17.82■□□□□ 0.44
TRIM28-201ENST00000253024 CHRNA7P36544 502 aa17.82■□□□□ 0.44
TRIM28-201ENST00000253024 SRSF7Q16629 238 aaKnown RBP eCLIP17.82■□□□□ 0.449e-7■□□□□ 10.6
TRIM28-201ENST00000253024 NCR3LG1Q68D85 454 aa17.82■□□□□ 0.44
TRIM28-201ENST00000253024 C11orf53Q8IXP5 236 aa17.82■□□□□ 0.44
TRIM28-201ENST00000253024 QTRT1Q9BXR0 403 aaKnown RBP17.82■□□□□ 0.44
TRIM28-201ENST00000253024 SPTA1P02549 2419 aa17.82■□□□□ 0.44
TRIM28-201ENST00000253024 KMT2EQ8IZD2 1858 aa17.82■□□□□ 0.44
TRIM28-201ENST00000253024 ANKRD11Q6UB99 2663 aaPredicted RBP17.82■□□□□ 0.44
TRIM28-201ENST00000253024 PPP1R2P9O14990 202 aa17.82■□□□□ 0.44
TRIM28-201ENST00000253024 GABRA6Q16445 453 aa17.82■□□□□ 0.44
TRIM28-201ENST00000253024 CST9LP1Q5W188 147 aa17.82■□□□□ 0.44
TRIM28-201ENST00000253024 LINC00469Q8N7U9 141 aa17.82■□□□□ 0.44
TRIM28-201ENST00000253024 LRRC29Q8WV35 223 aa17.82■□□□□ 0.44
TRIM28-201ENST00000253024 LSM10Q969L4 123 aaKnown RBP17.82■□□□□ 0.44
TRIM28-201ENST00000253024 PFDN5Q99471 154 aa17.82■□□□□ 0.44
TRIM28-201ENST00000253024 CECR9P0C854 216 aa17.82■□□□□ 0.44
TRIM28-201ENST00000253024 LINC00596Q86U02 117 aa17.82■□□□□ 0.44
TRIM28-201ENST00000253024 C1orf87Q8N0U7 546 aa17.82■□□□□ 0.44
TRIM28-201ENST00000253024 ZNF645Q8N7E2 425 aa17.82■□□□□ 0.44
TRIM28-201ENST00000253024 S100PBPQ96BU1 408 aa17.82■□□□□ 0.44
TRIM28-201ENST00000253024 OPA3Q9H6K4 179 aa17.82■□□□□ 0.44
TRIM28-201ENST00000253024 HCFC1P51610 2035 aa17.81■□□□□ 0.44
TRIM28-201ENST00000253024 TRAV3A0A0B4J244 114 aa17.81■□□□□ 0.44
TRIM28-201ENST00000253024 LRRC30A6NM36 301 aa17.81■□□□□ 0.44
TRIM28-201ENST00000253024 CLDN34H7C241 214 aa17.81■□□□□ 0.44
TRIM28-201ENST00000253024 MYOD1P15172 320 aa17.81■□□□□ 0.44
TRIM28-201ENST00000253024 ZNF146Q15072 292 aa17.81■□□□□ 0.44
TRIM28-201ENST00000253024 WDR82Q6UXN9 313 aa17.81■□□□□ 0.44
TRIM28-201ENST00000253024 DBX2Q6ZNG2 339 aa17.81■□□□□ 0.44
TRIM28-201ENST00000253024 FAM214BQ7L5A3 538 aa17.81■□□□□ 0.44
TRIM28-201ENST00000253024 SLC35E3Q7Z769 313 aa17.81■□□□□ 0.44
TRIM28-201ENST00000253024 OR10P1Q8NGE3 313 aa17.81■□□□□ 0.44
TRIM28-201ENST00000253024 IER2Q9BTL4 223 aa17.81■□□□□ 0.44
TRIM28-201ENST00000253024 DERL1Q9BUN8 251 aa17.81■□□□□ 0.44
TRIM28-201ENST00000253024 SDF2L1Q9HCN8 221 aa17.81■□□□□ 0.44
TRIM28-201ENST00000253024 CISD1Q9NZ45 108 aaKnown RBP17.81■□□□□ 0.44
TRIM28-201ENST00000253024 VAX2Q9UIW0 290 aa17.81■□□□□ 0.44
TRIM28-201ENST00000253024 TRBV6-6A0A0A6YYG2 114 aa17.8■□□□□ 0.44
TRIM28-201ENST00000253024 TNFSF10P50591 281 aa17.8■□□□□ 0.44
TRIM28-201ENST00000253024 ZNF83P51522 516 aa17.8■□□□□ 0.44
TRIM28-201ENST00000253024 RAB24Q969Q5 203 aa17.8■□□□□ 0.44
TRIM28-201ENST00000253024 MBNL3Q9NUK0 354 aaKnown RBP17.8■□□□□ 0.44
TRIM28-201ENST00000253024 CXorf65A6NEN9 183 aa17.8■□□□□ 0.44
TRIM28-201ENST00000253024 NDUFS6O75380 124 aaKnown RBP17.8■□□□□ 0.44
TRIM28-201ENST00000253024 CDX1P47902 265 aaPredicted RBP17.8■□□□□ 0.44
Retrieved 100 of 20,778 RNA–protein pairs in 42.9 ms