RNA–Protein interactions for RNA: ENST00000637699.1

CLN3-262, Transcript of CLN3, battenin, humanhuman

TSL 2

Gene CLN3, Length 1,228 nt, Biotype nonsense mediated decay, Subcellular localisation Endoplasmic reticulum .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CLN3-262ENST00000637699 ZNF355PQ9NSJ1 428 aa14.84□□□□□ -0.03
CLN3-262ENST00000637699 FKBP14Q9NWM8 211 aa14.84□□□□□ -0.03
CLN3-262ENST00000637699 ABRACLQ9P1F3 81 aa14.84□□□□□ -0.03
CLN3-262ENST00000637699 METTL1Q9UBP6 276 aaKnown RBP14.84□□□□□ -0.03
CLN3-262ENST00000637699 ANKRD34BA5PLL1 514 aa14.83□□□□□ -0.04
CLN3-262ENST00000637699 OR5H14A6NHG9 310 aa14.83□□□□□ -0.04
CLN3-262ENST00000637699 H0YJW9 148 aa14.83□□□□□ -0.04
CLN3-262ENST00000637699 CA2P00918 260 aa14.83□□□□□ -0.04
CLN3-262ENST00000637699 TFAP2AP05549 437 aa14.83□□□□□ -0.04
CLN3-262ENST00000637699 MC5RP33032 325 aa14.83□□□□□ -0.04
CLN3-262ENST00000637699 C6orf141Q5SZD1 244 aa14.83□□□□□ -0.04
CLN3-262ENST00000637699 ZNF562Q6V9R5 426 aa14.83□□□□□ -0.04
CLN3-262ENST00000637699 CDH26Q8IXH8 852 aa14.83□□□□□ -0.04
CLN3-262ENST00000637699 ABHD14BQ96IU4 210 aa14.83□□□□□ -0.04
CLN3-262ENST00000637699 SULT4A1Q9BR01 284 aa14.83□□□□□ -0.04
CLN3-262ENST00000637699 FAAP24Q9BTP7 215 aa14.83□□□□□ -0.04
CLN3-262ENST00000637699 TMED9Q9BVK6 235 aa14.83□□□□□ -0.04
CLN3-262ENST00000637699 PARP12Q9H0J9 701 aaKnown RBP14.83□□□□□ -0.04
CLN3-262ENST00000637699 TUBA4BQ9H853 241 aa14.83□□□□□ -0.04
CLN3-262ENST00000637699 SLC23A1Q9UHI7 598 aa14.83□□□□□ -0.04
CLN3-262ENST00000637699 WASHC3Q9Y3C0 194 aa14.83□□□□□ -0.04
CLN3-262ENST00000637699 JTBO76095 146 aa14.82□□□□□ -0.04
CLN3-262ENST00000637699 ZP3P21754 424 aa14.82□□□□□ -0.04
CLN3-262ENST00000637699 PSG5Q15238 335 aa14.82□□□□□ -0.04
CLN3-262ENST00000637699 NEDD4LQ96PU5 975 aa14.82□□□□□ -0.04
CLN3-262ENST00000637699 C13orf42A0A1B0GVH6 325 aa14.81□□□□□ -0.04
CLN3-262ENST00000637699 RBBP9O75884 186 aa14.81□□□□□ -0.04
CLN3-262ENST00000637699 WNT4P56705 351 aa14.81□□□□□ -0.04
CLN3-262ENST00000637699 NANOGP1Q8N7R0 232 aa14.81□□□□□ -0.04
CLN3-262ENST00000637699 OR5T1Q8NG75 326 aa14.81□□□□□ -0.04
CLN3-262ENST00000637699 OR5AN1Q8NGI8 311 aa14.81□□□□□ -0.04
CLN3-262ENST00000637699 GRPEL2Q8TAA5 225 aa14.81□□□□□ -0.04
CLN3-262ENST00000637699 SETD6Q8TBK2 473 aa14.81□□□□□ -0.04
CLN3-262ENST00000637699 VCXQ9H320 206 aa14.81□□□□□ -0.04
CLN3-262ENST00000637699 H0Y980 276 aa14.8□□□□□ -0.04
CLN3-262ENST00000637699 MYL12BO14950 172 aa14.8□□□□□ -0.04
CLN3-262ENST00000637699 CELP19835 753 aa14.8□□□□□ -0.04
CLN3-262ENST00000637699 AQP4P55087 323 aa14.8□□□□□ -0.04
CLN3-262ENST00000637699 TAS2R43P59537 309 aa14.8□□□□□ -0.04
CLN3-262ENST00000637699 KLF5Q13887 457 aaPredicted RBP14.8□□□□□ -0.04
CLN3-262ENST00000637699 OR10K2Q6IF99 312 aa14.8□□□□□ -0.04
CLN3-262ENST00000637699 IL34Q6ZMJ4 242 aa14.8□□□□□ -0.04
CLN3-262ENST00000637699 C6orf201Q7Z4U5 140 aa14.8□□□□□ -0.04
CLN3-262ENST00000637699 DRAXINQ8NBI3 349 aaPredicted RBP14.8□□□□□ -0.04
CLN3-262ENST00000637699 OR9G4Q8NGQ1 327 aa14.8□□□□□ -0.04
CLN3-262ENST00000637699 DERL3Q96Q80 235 aa14.8□□□□□ -0.04
CLN3-262ENST00000637699 RNF5Q99942 180 aa14.8□□□□□ -0.04
CLN3-262ENST00000637699 CHMP1AQ9HD42 196 aaPredicted RBP14.8□□□□□ -0.04
CLN3-262ENST00000637699 RETNQ9HD89 108 aa14.8□□□□□ -0.04
CLN3-262ENST00000637699 PTGES3LE9PB15 166 aa14.79□□□□□ -0.04
CLN3-262ENST00000637699 SLC22A1O15245 554 aa14.79□□□□□ -0.04
CLN3-262ENST00000637699 CDK1P06493 297 aa14.79□□□□□ -0.04
CLN3-262ENST00000637699 CPEP16870 476 aa14.79□□□□□ -0.04
CLN3-262ENST00000637699 SYNJ2BPP57105 145 aa14.79□□□□□ -0.04
CLN3-262ENST00000637699 FXYD3Q14802 87 aa14.79□□□□□ -0.04
CLN3-262ENST00000637699 GTSCR1Q86UQ5 136 aa14.79□□□□□ -0.04
CLN3-262ENST00000637699 SVOPQ8N4V2 548 aa14.79□□□□□ -0.04
CLN3-262ENST00000637699 POC5Q8NA72 575 aa14.79□□□□□ -0.04
CLN3-262ENST00000637699 UQCC2Q9BRT2 126 aa14.79□□□□□ -0.04
CLN3-262ENST00000637699 GHRLQ9UBU3 117 aa14.79□□□□□ -0.04
CLN3-262ENST00000637699 ALMS1Q8TCU4 4167 aa14.78□□□□□ -0.04
CLN3-262ENST00000637699 CD1AP06126 327 aa14.78□□□□□ -0.04
CLN3-262ENST00000637699 LINC00205P59089 165 aa14.78□□□□□ -0.04
CLN3-262ENST00000637699 RPS16P62249 146 aaKnown RBP14.78□□□□□ -0.04
CLN3-262ENST00000637699 NKAIN3Q8N8D7 197 aa14.78□□□□□ -0.04
CLN3-262ENST00000637699 TSNAXQ99598 290 aaKnown RBP14.78□□□□□ -0.04
CLN3-262ENST00000637699 AGMATQ9BSE5 352 aa14.78□□□□□ -0.04
CLN3-262ENST00000637699 ADAM30Q9UKF2 790 aa14.78□□□□□ -0.04
CLN3-262ENST00000637699 A0A0G2JLM5 398 aa14.77□□□□□ -0.05
CLN3-262ENST00000637699 SLC25A17O43808 307 aa14.77□□□□□ -0.05
CLN3-262ENST00000637699 NAPSAO96009 420 aa14.77□□□□□ -0.05
CLN3-262ENST00000637699 IGKV1-16P04430 117 aa14.77□□□□□ -0.05
CLN3-262ENST00000637699 HTR2CP28335 458 aa14.77□□□□□ -0.05
CLN3-262ENST00000637699 CEACAM6P40199 344 aa14.77□□□□□ -0.05
CLN3-262ENST00000637699 DEFA5Q01523 94 aa14.77□□□□□ -0.05
CLN3-262ENST00000637699 INSL4Q14641 139 aa14.77□□□□□ -0.05
CLN3-262ENST00000637699 RNLSQ5VYX0 342 aa14.77□□□□□ -0.05
CLN3-262ENST00000637699 FAM110AQ9BQ89 295 aa14.77□□□□□ -0.05
CLN3-262ENST00000637699 THAP7Q9BT49 309 aaPredicted RBP14.77□□□□□ -0.05
CLN3-262ENST00000637699 C11orf54Q9H0W9 315 aaPredicted RBP14.77□□□□□ -0.05
CLN3-262ENST00000637699 OR1A1Q9P1Q5 309 aa14.77□□□□□ -0.05
CLN3-262ENST00000637699 IZUMO1RA6ND01 250 aa14.76□□□□□ -0.05
CLN3-262ENST00000637699 PROP1O75360 226 aa14.76□□□□□ -0.05
CLN3-262ENST00000637699 CNIH1O95406 144 aa14.76□□□□□ -0.05
CLN3-262ENST00000637699 RPS27AP62979 156 aaKnown RBP14.76□□□□□ -0.05
CLN3-262ENST00000637699 LCN12Q6JVE5 192 aa14.76□□□□□ -0.05
CLN3-262ENST00000637699 ZNF880Q6PDB4 577 aa14.76□□□□□ -0.05
CLN3-262ENST00000637699 NICN1Q9BSH3 213 aa14.76□□□□□ -0.05
CLN3-262ENST00000637699 LSM2Q9Y333 95 aaKnown RBP14.76□□□□□ -0.05
CLN3-262ENST00000637699 H3BUA1 57 aa14.75□□□□□ -0.05
CLN3-262ENST00000637699 ITGB1BP1O14713 200 aa14.75□□□□□ -0.05
CLN3-262ENST00000637699 SPDEFO95238 335 aa14.75□□□□□ -0.05
CLN3-262ENST00000637699 CSN3P07498 182 aa14.75□□□□□ -0.05
CLN3-262ENST00000637699 UBBP0CG47 229 aa14.75□□□□□ -0.05
CLN3-262ENST00000637699 MOGAT2Q3SYC2 334 aa14.75□□□□□ -0.05
CLN3-262ENST00000637699 ZNF383Q8NA42 475 aa14.75□□□□□ -0.05
CLN3-262ENST00000637699 IL17DQ8TAD2 202 aa14.75□□□□□ -0.05
CLN3-262ENST00000637699 EDARADDQ8WWZ3 215 aa14.75□□□□□ -0.05
CLN3-262ENST00000637699 MND1Q9BWT6 205 aa14.75□□□□□ -0.05
CLN3-262ENST00000637699 TMEM59Q9BXS4 323 aa14.75□□□□□ -0.05
Retrieved 100 of 20,778 RNA–protein pairs in 55.7 ms