RNA–Protein interactions for RNA: ENST00000637110.1

CLN3-257, Transcript of CLN3, battenin, humanhuman

TSL 5

Gene CLN3, Length 565 nt, Biotype processed transcript, Subcellular localisation Endoplasmic reticulum .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CLN3-257ENST00000637110 HIST1H1DP16402 221 aaKnown RBP9.14□□□□□ -0.95
CLN3-257ENST00000637110 FGF9P31371 208 aaPredicted RBP9.14□□□□□ -0.95
CLN3-257ENST00000637110 MC5RP33032 325 aa9.14□□□□□ -0.95
CLN3-257ENST00000637110 SERPINB10P48595 397 aa9.14□□□□□ -0.95
CLN3-257ENST00000637110 RAB25P57735 213 aa9.14□□□□□ -0.95
CLN3-257ENST00000637110 LIN54Q6MZP7 749 aa9.14□□□□□ -0.95
CLN3-257ENST00000637110 C18orf65Q6ZTR6 163 aa9.14□□□□□ -0.95
CLN3-257ENST00000637110 TPRA1Q86W33 373 aa9.14□□□□□ -0.95
CLN3-257ENST00000637110 ZNF695Q8IW36 515 aa9.14□□□□□ -0.95
CLN3-257ENST00000637110 DRAXINQ8NBI3 349 aaPredicted RBP9.14□□□□□ -0.95
CLN3-257ENST00000637110 OR4A4PQ8NGN8 299 aa9.14□□□□□ -0.95
CLN3-257ENST00000637110 OR10J5Q8NHC4 309 aa9.14□□□□□ -0.95
CLN3-257ENST00000637110 KCTD7Q96MP8 289 aa9.14□□□□□ -0.95
CLN3-257ENST00000637110 B9D2Q9BPU9 175 aa9.14□□□□□ -0.95
CLN3-257ENST00000637110 GINS4Q9BRT9 223 aa9.14□□□□□ -0.95
CLN3-257ENST00000637110 ZNF230Q9UIE0 474 aaPredicted RBP9.14□□□□□ -0.95
CLN3-257ENST00000637110 WASHC3Q9Y3C0 194 aa9.14□□□□□ -0.95
CLN3-257ENST00000637110 WSB1Q9Y6I7 421 aa9.14□□□□□ -0.95
CLN3-257ENST00000637110 OR5H14A6NHG9 310 aa9.13□□□□□ -0.95
CLN3-257ENST00000637110 M0R1X1 148 aa9.13□□□□□ -0.95
CLN3-257ENST00000637110 RAB27BO00194 218 aa9.13□□□□□ -0.95
CLN3-257ENST00000637110 ITGB1BP1O14713 200 aa9.13□□□□□ -0.95
CLN3-257ENST00000637110 RPLP1P05386 114 aaKnown RBP9.13□□□□□ -0.95
CLN3-257ENST00000637110 SNRPBP14678 240 aaKnown RBP9.13□□□□□ -0.95
CLN3-257ENST00000637110 CD36P16671 472 aa9.13□□□□□ -0.95
CLN3-257ENST00000637110 SDC2P34741 201 aa9.13□□□□□ -0.95
CLN3-257ENST00000637110 DCTN2Q13561 401 aaKnown RBP9.13□□□□□ -0.95
CLN3-257ENST00000637110 ARL6IP1Q15041 203 aa9.13□□□□□ -0.95
CLN3-257ENST00000637110 C5orf64Q2M2E5 130 aa9.13□□□□□ -0.95
CLN3-257ENST00000637110 IGSF11Q5DX21 431 aa9.13□□□□□ -0.95
CLN3-257ENST00000637110 TMEM65Q6PI78 240 aa9.13□□□□□ -0.95
CLN3-257ENST00000637110 LCNL1Q6ZST4 164 aa9.13□□□□□ -0.95
CLN3-257ENST00000637110 NR2C2APQ86WQ0 139 aa9.13□□□□□ -0.95
CLN3-257ENST00000637110 PTX4Q96A99 478 aa9.13□□□□□ -0.95
CLN3-257ENST00000637110 DUX3Q96PT4 197 aa9.13□□□□□ -0.95
CLN3-257ENST00000637110 CLCC1Q96S66 551 aa9.13□□□□□ -0.95
CLN3-257ENST00000637110 KCNK7Q9Y2U2 307 aa9.13□□□□□ -0.95
CLN3-257ENST00000637110 IGKV1-6A0A0C4DH72 117 aa9.12□□□□□ -0.95
CLN3-257ENST00000637110 H0YJW9 148 aa9.12□□□□□ -0.95
CLN3-257ENST00000637110 MFNGO00587 321 aa9.12□□□□□ -0.95
CLN3-257ENST00000637110 ATP6V0E1O15342 81 aa9.12□□□□□ -0.95
CLN3-257ENST00000637110 APOA2P02652 100 aa9.12□□□□□ -0.95
CLN3-257ENST00000637110 TFAP2AP05549 437 aa9.12□□□□□ -0.95
CLN3-257ENST00000637110 ELANEP08246 267 aa9.12□□□□□ -0.95
CLN3-257ENST00000637110 OR8U9P0C7N5 309 aa9.12□□□□□ -0.95
CLN3-257ENST00000637110 MYCNOSP40205 109 aa9.12□□□□□ -0.95
CLN3-257ENST00000637110 RPS16P62249 146 aaKnown RBP9.12□□□□□ -0.95
CLN3-257ENST00000637110 FOXE3Q13461 319 aa9.12□□□□□ -0.95
CLN3-257ENST00000637110 CDNFQ49AH0 187 aa9.12□□□□□ -0.95
CLN3-257ENST00000637110 KCTD21Q4G0X4 260 aa9.12□□□□□ -0.95
CLN3-257ENST00000637110 IDNKQ5T6J7 187 aa9.12□□□□□ -0.95
CLN3-257ENST00000637110 WFDC9Q8NEX5 89 aa9.12□□□□□ -0.95
CLN3-257ENST00000637110 NPBQ8NG41 125 aa9.12□□□□□ -0.95
CLN3-257ENST00000637110 OR8U1Q8NH10 309 aa9.12□□□□□ -0.95
CLN3-257ENST00000637110 DPF1Q92782 380 aa9.12□□□□□ -0.95
CLN3-257ENST00000637110 RCC1LQ96I51 464 aaKnown RBP9.12□□□□□ -0.95
CLN3-257ENST00000637110 AGMATQ9BSE5 352 aa9.12□□□□□ -0.95
CLN3-257ENST00000637110 ST6GALNAC5Q9BVH7 336 aa9.12□□□□□ -0.95
CLN3-257ENST00000637110 OR2D2Q9H210 308 aa9.12□□□□□ -0.95
CLN3-257ENST00000637110 OR51J1Q9H342 316 aa9.12□□□□□ -0.95
CLN3-257ENST00000637110 FBXL15Q9H469 300 aa9.12□□□□□ -0.95
CLN3-257ENST00000637110 VCX3AQ9NNX9 186 aa9.12□□□□□ -0.95
CLN3-257ENST00000637110 A3GALT2U3KPV4 340 aa9.12□□□□□ -0.95
CLN3-257ENST00000637110 TRAV41A0A0B4J266 112 aa9.11□□□□□ -0.95
CLN3-257ENST00000637110 G3V318 75 aa9.11□□□□□ -0.95
CLN3-257ENST00000637110 J3QRK9 145 aa9.11□□□□□ -0.95
CLN3-257ENST00000637110 RRHO14718 337 aa9.11□□□□□ -0.95
CLN3-257ENST00000637110 RBBP9O75884 186 aa9.11□□□□□ -0.95
CLN3-257ENST00000637110 DUS4LO95620 317 aaKnown RBP9.11□□□□□ -0.95
CLN3-257ENST00000637110 HLA-DRB1P01911 266 aa9.11□□□□□ -0.95
CLN3-257ENST00000637110 IGF1P05019 195 aa9.11□□□□□ -0.95
CLN3-257ENST00000637110 CLEC2LP0C7M8 214 aa9.11□□□□□ -0.95
CLN3-257ENST00000637110 SLC6A1P30531 599 aa9.11□□□□□ -0.95
CLN3-257ENST00000637110 THBS3P49746 956 aa9.11□□□□□ -0.95
CLN3-257ENST00000637110 GNG2P59768 71 aa9.11□□□□□ -0.95
CLN3-257ENST00000637110 CBX3Q13185 183 aa9.11□□□□□ -0.95
CLN3-257ENST00000637110 ECSCRQ19T08 205 aa9.11□□□□□ -0.95
CLN3-257ENST00000637110 SFXN4Q6P4A7 337 aa9.11□□□□□ -0.95
CLN3-257ENST00000637110 MRPL41Q8IXM3 137 aaKnown RBP9.11□□□□□ -0.95
CLN3-257ENST00000637110 OR5AN1Q8NGI8 311 aa9.11□□□□□ -0.95
CLN3-257ENST00000637110 LGALS14Q8TCE9 139 aa9.11□□□□□ -0.95
CLN3-257ENST00000637110 CENPOQ9BU64 300 aa9.11□□□□□ -0.95
CLN3-257ENST00000637110 KRTAP17-1Q9BYP8 105 aa9.11□□□□□ -0.95
CLN3-257ENST00000637110 RNF167Q9H6Y7 350 aa9.11□□□□□ -0.95
CLN3-257ENST00000637110 METTL1Q9UBP6 276 aaKnown RBP9.11□□□□□ -0.95
CLN3-257ENST00000637110 ELF5Q9UKW6 265 aaPredicted RBP9.11□□□□□ -0.95
CLN3-257ENST00000637110 TRBV6-7A0A0A0MS04 114 aa9.1□□□□□ -0.95
CLN3-257ENST00000637110 IGHV7-81A0A0B4J1V7 117 aa9.1□□□□□ -0.95
CLN3-257ENST00000637110 CCL24O00175 119 aa9.1□□□□□ -0.95
CLN3-257ENST00000637110 SCGNO76038 276 aa9.1□□□□□ -0.95
CLN3-257ENST00000637110 NDUFA3O95167 84 aa9.1□□□□□ -0.95
CLN3-257ENST00000637110 NHLRC4P0CG21 123 aaPredicted RBP9.1□□□□□ -0.95
CLN3-257ENST00000637110 LINC00205P59089 165 aa9.1□□□□□ -0.95
CLN3-257ENST00000637110 DEFB136Q30KP8 78 aa9.1□□□□□ -0.95
CLN3-257ENST00000637110 LINC00482Q8N8I6 264 aa9.1□□□□□ -0.95
CLN3-257ENST00000637110 ZNF383Q8NA42 475 aa9.1□□□□□ -0.95
CLN3-257ENST00000637110 FLYWCH2Q96CP2 140 aaKnown RBP9.1□□□□□ -0.95
CLN3-257ENST00000637110 TSNAXQ99598 290 aaKnown RBP9.1□□□□□ -0.95
CLN3-257ENST00000637110 CABLES2Q9BTV7 478 aa9.1□□□□□ -0.95
CLN3-257ENST00000637110 GPR61Q9BZJ8 451 aa9.1□□□□□ -0.95
Retrieved 100 of 20,778 RNA–protein pairs in 24.6 ms