RNA–Protein interactions for RNA: ENST00000625916.1

SCN1A-208, Transcript of sodium voltage-gated channel alpha subunit 1, humanhuman

TSL 4

Gene SCN1A, Length 560 nt, Biotype retained intron, Subcellular localisation Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SCN1A-208ENST00000625916 TAS2R30P59541 319 aa0.19□□□□□ -2.38
SCN1A-208ENST00000625916 UBE2KP61086 200 aa0.19□□□□□ -2.38
SCN1A-208ENST00000625916 GTF2BQ00403 316 aa0.19□□□□□ -2.38
SCN1A-208ENST00000625916 GNA12Q03113 381 aa0.19□□□□□ -2.38
SCN1A-208ENST00000625916 BSXQ3C1V8 233 aa0.19□□□□□ -2.38
SCN1A-208ENST00000625916 KRTAP21-1Q3LI58 79 aa0.19□□□□□ -2.38
SCN1A-208ENST00000625916 KRTAP19-3Q7Z4W3 81 aa0.19□□□□□ -2.38
SCN1A-208ENST00000625916 OR51T1Q8NGJ9 327 aa0.19□□□□□ -2.38
SCN1A-208ENST00000625916 CLDND2Q8NHS1 167 aa0.19□□□□□ -2.38
SCN1A-208ENST00000625916 MBD3L1Q8WWY6 194 aa0.19□□□□□ -2.38
SCN1A-208ENST00000625916 OR5P2Q8WZ92 322 aa0.19□□□□□ -2.38
SCN1A-208ENST00000625916 SLC7A6Q92536 515 aa0.19□□□□□ -2.38
SCN1A-208ENST00000625916 SLC2A9Q9NRM0 540 aa0.19□□□□□ -2.38
SCN1A-208ENST00000625916 TAAR3PQ9P1P4 343 aa0.19□□□□□ -2.38
SCN1A-208ENST00000625916 BZW2Q9Y6E2 419 aaKnown RBP0.19□□□□□ -2.38
SCN1A-208ENST00000625916 MICAL3Q7RTP6 2002 aa0.19□□□□□ -2.38
SCN1A-208ENST00000625916 IGKV2D-29A0A075B6S2 120 aaPredicted RBP0.18□□□□□ -2.38
SCN1A-208ENST00000625916 GPR171O14626 319 aa0.18□□□□□ -2.38
SCN1A-208ENST00000625916 KLRC4O43908 158 aa0.18□□□□□ -2.38
SCN1A-208ENST00000625916 SNAP29O95721 258 aa0.18□□□□□ -2.38
SCN1A-208ENST00000625916 NPPAP01160 153 aa0.18□□□□□ -2.38
SCN1A-208ENST00000625916 NPYP01303 97 aa0.18□□□□□ -2.38
SCN1A-208ENST00000625916 IGLV3-27P01718 113 aa0.18□□□□□ -2.38
SCN1A-208ENST00000625916 TPM2P07951 284 aa0.18□□□□□ -2.38
SCN1A-208ENST00000625916 PTNP21246 168 aa0.18□□□□□ -2.38
SCN1A-208ENST00000625916 CD79BP40259 229 aa0.18□□□□□ -2.38
SCN1A-208ENST00000625916 STC1P52823 247 aa0.18□□□□□ -2.38
SCN1A-208ENST00000625916 ELOBQ15370 118 aa0.18□□□□□ -2.38
SCN1A-208ENST00000625916 HNRNPA1L2Q32P51 320 aaKnown RBP0.18□□□□□ -2.38
SCN1A-208ENST00000625916 LGALS9BQ3B8N2 356 aa0.18□□□□□ -2.38
SCN1A-208ENST00000625916 NKAIN1Q4KMZ8 207 aa0.18□□□□□ -2.38
SCN1A-208ENST00000625916 LYZL1Q6UWQ5 148 aa0.18□□□□□ -2.38
SCN1A-208ENST00000625916 C7orf65Q6ZTY9 151 aa0.18□□□□□ -2.38
SCN1A-208ENST00000625916 AHSA2Q719I0 299 aa0.18□□□□□ -2.38
SCN1A-208ENST00000625916 SLC36A1Q7Z2H8 476 aa0.18□□□□□ -2.38
SCN1A-208ENST00000625916 MRPL52Q86TS9 123 aaKnown RBP0.18□□□□□ -2.38
SCN1A-208ENST00000625916 Q8N2B8 174 aa0.18□□□□□ -2.38
SCN1A-208ENST00000625916 NATD1Q8N6N6 113 aa0.18□□□□□ -2.38
SCN1A-208ENST00000625916 C15orf53Q8NAA6 179 aa0.18□□□□□ -2.38
SCN1A-208ENST00000625916 OR2D3Q8NGH3 330 aa0.18□□□□□ -2.38
SCN1A-208ENST00000625916 OR51H1Q8NH63 302 aa0.18□□□□□ -2.38
SCN1A-208ENST00000625916 RPS4Y2Q8TD47 263 aa0.18□□□□□ -2.38
SCN1A-208ENST00000625916 SMCR5Q8TEV8 140 aa0.18□□□□□ -2.38
SCN1A-208ENST00000625916 CCDC127Q96BQ5 260 aa0.18□□□□□ -2.38
SCN1A-208ENST00000625916 TAMM41Q96BW9 452 aa0.18□□□□□ -2.38
SCN1A-208ENST00000625916 NKX6-2Q9C056 277 aaPredicted RBP0.18□□□□□ -2.38
SCN1A-208ENST00000625916 COMMD9Q9P000 198 aa0.18□□□□□ -2.38
SCN1A-208ENST00000625916 CLEC2DQ9UHP7 191 aa0.18□□□□□ -2.38
SCN1A-208ENST00000625916 TRAPPC13A5PLN9 417 aa0.17□□□□□ -2.38
SCN1A-208ENST00000625916 GEMIN2O14893 280 aaKnown RBP0.17□□□□□ -2.38
SCN1A-208ENST00000625916 GSTZ1O43708 216 aaPredicted RBP0.17□□□□□ -2.38
SCN1A-208ENST00000625916 NDUFB2O95178 105 aa0.17□□□□□ -2.38
SCN1A-208ENST00000625916 IFNGR2P38484 337 aa0.17□□□□□ -2.38
SCN1A-208ENST00000625916 CCR2P41597 374 aa0.17□□□□□ -2.38
SCN1A-208ENST00000625916 EVX1P49640 407 aa0.17□□□□□ -2.38
SCN1A-208ENST00000625916 EMP1P54849 157 aa0.17□□□□□ -2.38
SCN1A-208ENST00000625916 LINC00313P59037 77 aa0.17□□□□□ -2.38
SCN1A-208ENST00000625916 MOGQ16653 247 aa0.17□□□□□ -2.38
SCN1A-208ENST00000625916 LRRC6Q86X45 466 aa0.17□□□□□ -2.38
SCN1A-208ENST00000625916 PLCZ1Q86YW0 608 aa0.17□□□□□ -2.38
SCN1A-208ENST00000625916 FAM19A2Q8N3H0 131 aa0.17□□□□□ -2.38
SCN1A-208ENST00000625916 ZNF321PQ8N8H1 164 aa0.17□□□□□ -2.38
SCN1A-208ENST00000625916 MITD1Q8WV92 249 aa0.17□□□□□ -2.38
SCN1A-208ENST00000625916 CIDECQ96AQ7 238 aaPredicted RBP0.17□□□□□ -2.38
SCN1A-208ENST00000625916 TMA16Q96EY4 203 aaKnown RBP0.17□□□□□ -2.38
SCN1A-208ENST00000625916 HINT2Q9BX68 163 aa0.17□□□□□ -2.38
SCN1A-208ENST00000625916 MS4A12Q9NXJ0 267 aa0.17□□□□□ -2.38
SCN1A-208ENST00000625916 SNX24Q9Y343 169 aa0.17□□□□□ -2.38
SCN1A-208ENST00000625916 TIMM9Q9Y5J7 89 aa0.17□□□□□ -2.38
SCN1A-208ENST00000625916 SNX10Q9Y5X0 201 aa0.17□□□□□ -2.38
SCN1A-208ENST00000625916 SNURFQ9Y675 71 aa0.17□□□□□ -2.38
SCN1A-208ENST00000625916 LAMB4A4D0S4 1761 aa0.17□□□□□ -2.38
SCN1A-208ENST00000625916 SCN9AQ15858 1988 aa0.16□□□□□ -2.38
SCN1A-208ENST00000625916 A0A1B0GW15 77 aa0.16□□□□□ -2.38
SCN1A-208ENST00000625916 RAB19A4D1S5 217 aa0.16□□□□□ -2.38
SCN1A-208ENST00000625916 ORC5O43913 435 aa0.16□□□□□ -2.38
SCN1A-208ENST00000625916 HMMRO75330 724 aa0.16□□□□□ -2.38
SCN1A-208ENST00000625916 CCNOP22674 350 aa0.16□□□□□ -2.38
SCN1A-208ENST00000625916 ALDH3A1P30838 453 aa0.16□□□□□ -2.38
SCN1A-208ENST00000625916 HSPA9P38646 679 aaKnown RBP0.16□□□□□ -2.38
SCN1A-208ENST00000625916 RPL27AP46776 148 aaKnown RBP0.16□□□□□ -2.38
SCN1A-208ENST00000625916 REG1BP48304 166 aa0.16□□□□□ -2.38
SCN1A-208ENST00000625916 CDK9P50750 372 aaKnown RBP0.16□□□□□ -2.38
SCN1A-208ENST00000625916 DAPP51397 102 aa0.16□□□□□ -2.38
SCN1A-208ENST00000625916 AQP4P55087 323 aa0.16□□□□□ -2.38
SCN1A-208ENST00000625916 BTN3A2P78410 334 aa0.16□□□□□ -2.38
SCN1A-208ENST00000625916 C1DQ13901 141 aaKnown RBP0.16□□□□□ -2.38
SCN1A-208ENST00000625916 FLOT2Q14254 428 aa0.16□□□□□ -2.38
SCN1A-208ENST00000625916 Q1T7F1 81 aa0.16□□□□□ -2.38
SCN1A-208ENST00000625916 ARHGAP11BQ3KRB8 267 aa0.16□□□□□ -2.38
SCN1A-208ENST00000625916 OR10J3Q5JRS4 329 aa0.16□□□□□ -2.38
SCN1A-208ENST00000625916 SPATA31B1PQ5VZV4 182 aa0.16□□□□□ -2.38
SCN1A-208ENST00000625916 ZNF705AQ6ZN79 300 aaPredicted RBP0.16□□□□□ -2.38
SCN1A-208ENST00000625916 DYNAPQ8N1N2 210 aa0.16□□□□□ -2.38
SCN1A-208ENST00000625916 DAND5Q8N907 189 aa0.16□□□□□ -2.38
SCN1A-208ENST00000625916 OR1L8Q8NGR8 309 aa0.16□□□□□ -2.38
SCN1A-208ENST00000625916 OR2Y1Q8NGV0 311 aa0.16□□□□□ -2.38
SCN1A-208ENST00000625916 TNFAIP8L1Q8WVP5 186 aa0.16□□□□□ -2.38
SCN1A-208ENST00000625916 ACY3Q96HD9 319 aa0.16□□□□□ -2.38
SCN1A-208ENST00000625916 EIF5A2Q9GZV4 153 aaKnown RBP0.16□□□□□ -2.38
Retrieved 100 of 20,778 RNA–protein pairs in 31.4 ms