RNA–Protein interactions for RNA: ENST00000593582.5

TRIM28-203, Transcript of tripartite motif containing 28, humanhuman

TSL 3

Gene TRIM28, Length 533 nt, Biotype protein coding, Subcellular localisation Cytosol, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
TRIM28-203ENST00000593582 PLGLAQ15195 96 aa11.98□□□□□ -0.49
TRIM28-203ENST00000593582 FOXB2Q5VYV0 432 aa11.98□□□□□ -0.49
TRIM28-203ENST00000593582 GLDNQ6ZMI3 551 aaPredicted RBP11.98□□□□□ -0.49
TRIM28-203ENST00000593582 ETV3LQ6ZN32 361 aa11.98□□□□□ -0.49
TRIM28-203ENST00000593582 C18orf65Q6ZTR6 163 aa11.98□□□□□ -0.49
TRIM28-203ENST00000593582 TPRA1Q86W33 373 aa11.98□□□□□ -0.49
TRIM28-203ENST00000593582 RNF152Q8N8N0 203 aa11.98□□□□□ -0.49
TRIM28-203ENST00000593582 OR5AN1Q8NGI8 311 aa11.98□□□□□ -0.49
TRIM28-203ENST00000593582 OR10J5Q8NHC4 309 aa11.98□□□□□ -0.49
TRIM28-203ENST00000593582 KCTD7Q96MP8 289 aa11.98□□□□□ -0.49
TRIM28-203ENST00000593582 OR51J1Q9H342 316 aa11.98□□□□□ -0.49
TRIM28-203ENST00000593582 RDH8Q9NYR8 311 aa11.98□□□□□ -0.49
TRIM28-203ENST00000593582 WASHC3Q9Y3C0 194 aa11.98□□□□□ -0.49
TRIM28-203ENST00000593582 RBBP9O75884 186 aa11.97□□□□□ -0.49
TRIM28-203ENST00000593582 NDUFA3O95167 84 aa11.97□□□□□ -0.49
TRIM28-203ENST00000593582 ARFRP1Q13795 201 aa11.97□□□□□ -0.49
TRIM28-203ENST00000593582 ARL6IP1Q15041 203 aa11.97□□□□□ -0.49
TRIM28-203ENST00000593582 LCNL1Q6ZST4 164 aa11.97□□□□□ -0.49
TRIM28-203ENST00000593582 CENPOQ9BU64 300 aa11.97□□□□□ -0.49
TRIM28-203ENST00000593582 GPR61Q9BZJ8 451 aa11.97□□□□□ -0.49
TRIM28-203ENST00000593582 PARP11Q9NR21 331 aa11.97□□□□□ -0.49
TRIM28-203ENST00000593582 ZNF230Q9UIE0 474 aaPredicted RBP11.97□□□□□ -0.49
TRIM28-203ENST00000593582 DAPK2Q9UIK4 370 aa11.97□□□□□ -0.49
TRIM28-203ENST00000593582 IGHV7-81A0A0B4J1V7 117 aa11.96□□□□□ -0.49
TRIM28-203ENST00000593582 CCL24O00175 119 aa11.96□□□□□ -0.49
TRIM28-203ENST00000593582 RRHO14718 337 aa11.96□□□□□ -0.49
TRIM28-203ENST00000593582 ATP6V0E1O15342 81 aa11.96□□□□□ -0.49
TRIM28-203ENST00000593582 DIRAS3O95661 229 aa11.96□□□□□ -0.49
TRIM28-203ENST00000593582 TFAP2AP05549 437 aa11.96□□□□□ -0.49
TRIM28-203ENST00000593582 GSTT2P0CG29 244 aa11.96□□□□□ -0.49
TRIM28-203ENST00000593582 GSTT2BP0CG30 244 aa11.96□□□□□ -0.49
TRIM28-203ENST00000593582 CDX1P47902 265 aaPredicted RBP11.96□□□□□ -0.49
TRIM28-203ENST00000593582 NEDD8Q15843 81 aa11.96□□□□□ -0.49
TRIM28-203ENST00000593582 KCTD21Q4G0X4 260 aa11.96□□□□□ -0.49
TRIM28-203ENST00000593582 IGSF11Q5DX21 431 aa11.96□□□□□ -0.49
TRIM28-203ENST00000593582 TMEM65Q6PI78 240 aa11.96□□□□□ -0.49
TRIM28-203ENST00000593582 DRAXINQ8NBI3 349 aaPredicted RBP11.96□□□□□ -0.49
TRIM28-203ENST00000593582 OR8U1Q8NH10 309 aa11.96□□□□□ -0.49
TRIM28-203ENST00000593582 P2RX4Q99571 388 aa11.96□□□□□ -0.49
TRIM28-203ENST00000593582 RNF5Q99942 180 aa11.96□□□□□ -0.49
TRIM28-203ENST00000593582 CABLES2Q9BTV7 478 aa11.96□□□□□ -0.49
TRIM28-203ENST00000593582 MCRIP2Q9BUT9 160 aaKnown RBP11.96□□□□□ -0.49
TRIM28-203ENST00000593582 TOLLIPQ9H0E2 274 aa11.96□□□□□ -0.49
TRIM28-203ENST00000593582 OR51E2Q9H255 320 aa11.96□□□□□ -0.49
TRIM28-203ENST00000593582 WSB1Q9Y6I7 421 aa11.96□□□□□ -0.49
TRIM28-203ENST00000593582 TRBV6-7A0A0A0MS04 114 aa11.95□□□□□ -0.5
TRIM28-203ENST00000593582 G3V318 75 aa11.95□□□□□ -0.5
TRIM28-203ENST00000593582 SCGNO76038 276 aa11.95□□□□□ -0.5
TRIM28-203ENST00000593582 APOA2P02652 100 aa11.95□□□□□ -0.5
TRIM28-203ENST00000593582 OR8U9P0C7N5 309 aa11.95□□□□□ -0.5
TRIM28-203ENST00000593582 PSMB8P28062 276 aa11.95□□□□□ -0.5
TRIM28-203ENST00000593582 SDC2P34741 201 aa11.95□□□□□ -0.5
TRIM28-203ENST00000593582 SRSF7Q16629 238 aaKnown RBP eCLIP11.95□□□□□ -0.5
TRIM28-203ENST00000593582 SFXN4Q6P4A7 337 aa11.95□□□□□ -0.5
TRIM28-203ENST00000593582 ZNF436-AS1Q8NC38 126 aaPredicted RBP11.95□□□□□ -0.5
TRIM28-203ENST00000593582 MRAPQ8TCY5 172 aa11.95□□□□□ -0.5
TRIM28-203ENST00000593582 MAFIPQ8WZ33 124 aa11.95□□□□□ -0.5
TRIM28-203ENST00000593582 DPF1Q92782 380 aa11.95□□□□□ -0.5
TRIM28-203ENST00000593582 RAX2Q96IS3 184 aa11.95□□□□□ -0.5
TRIM28-203ENST00000593582 GINS4Q9BRT9 223 aa11.95□□□□□ -0.5
TRIM28-203ENST00000593582 FBXL15Q9H469 300 aa11.95□□□□□ -0.5
TRIM28-203ENST00000593582 AURKAIP1Q9NWT8 199 aaPredicted RBP11.95□□□□□ -0.5
TRIM28-203ENST00000593582 RRP15Q9Y3B9 282 aaKnown RBP11.95□□□□□ -0.5
TRIM28-203ENST00000593582 DNAH3Q8TD57 4116 aa11.95□□□□□ -0.5
TRIM28-203ENST00000593582 TRAV41A0A0B4J266 112 aa11.94□□□□□ -0.5
TRIM28-203ENST00000593582 LOC100506127A0A0U1RQW1 187 aa11.94□□□□□ -0.5
TRIM28-203ENST00000593582 M0R1X1 148 aa11.94□□□□□ -0.5
TRIM28-203ENST00000593582 PROP1O75360 226 aa11.94□□□□□ -0.5
TRIM28-203ENST00000593582 CD36P16671 472 aa11.94□□□□□ -0.5
TRIM28-203ENST00000593582 DTYMKP23919 212 aa11.94□□□□□ -0.5
TRIM28-203ENST00000593582 PPIFP30405 207 aaKnown RBP11.94□□□□□ -0.5
TRIM28-203ENST00000593582 RAB25P57735 213 aa11.94□□□□□ -0.5
TRIM28-203ENST00000593582 CDNFQ49AH0 187 aa11.94□□□□□ -0.5
TRIM28-203ENST00000593582 ZNF660Q6AZW8 331 aaPredicted RBP11.94□□□□□ -0.5
TRIM28-203ENST00000593582 Q6ZS49 121 aa11.94□□□□□ -0.5
TRIM28-203ENST00000593582 PDPNQ86YL7 162 aa11.94□□□□□ -0.5
TRIM28-203ENST00000593582 ZNF383Q8NA42 475 aa11.94□□□□□ -0.5
TRIM28-203ENST00000593582 C4orf3Q8WVX3 66 aa11.94□□□□□ -0.5
TRIM28-203ENST00000593582 DUX3Q96PT4 197 aa11.94□□□□□ -0.5
TRIM28-203ENST00000593582 TSNAXQ99598 290 aaKnown RBP11.94□□□□□ -0.5
TRIM28-203ENST00000593582 OR2D2Q9H210 308 aa11.94□□□□□ -0.5
TRIM28-203ENST00000593582 EXOSC5Q9NQT4 235 aaKnown RBP eCLIP11.94□□□□□ -0.52e-6■■■□□ 16
TRIM28-203ENST00000593582 RBM7Q9Y580 266 aaKnown RBP11.94□□□□□ -0.5
TRIM28-203ENST00000593582 IGLV1-40P01703 118 aa11.93□□□□□ -0.5
TRIM28-203ENST00000593582 IGKV1-16P04430 117 aa11.93□□□□□ -0.5
TRIM28-203ENST00000593582 SNRPBP14678 240 aaKnown RBP11.93□□□□□ -0.5
TRIM28-203ENST00000593582 LINC00205P59089 165 aa11.93□□□□□ -0.5
TRIM28-203ENST00000593582 RPS16P62249 146 aaKnown RBP11.93□□□□□ -0.5
TRIM28-203ENST00000593582 CX3CL1P78423 397 aa11.93□□□□□ -0.5
TRIM28-203ENST00000593582 MXD1Q05195 221 aa11.93□□□□□ -0.5
TRIM28-203ENST00000593582 PSG5Q15238 335 aa11.93□□□□□ -0.5
TRIM28-203ENST00000593582 DEFB136Q30KP8 78 aa11.93□□□□□ -0.5
TRIM28-203ENST00000593582 HACD4Q5VWC8 232 aa11.93□□□□□ -0.5
TRIM28-203ENST00000593582 LGALS14Q8TCE9 139 aa11.93□□□□□ -0.5
TRIM28-203ENST00000593582 ABHD5Q8WTS1 349 aa11.93□□□□□ -0.5
TRIM28-203ENST00000593582 FLYWCH2Q96CP2 140 aaKnown RBP11.93□□□□□ -0.5
TRIM28-203ENST00000593582 METTL1Q9UBP6 276 aaKnown RBP11.93□□□□□ -0.5
TRIM28-203ENST00000593582 GAB2Q9UQC2 676 aa11.93□□□□□ -0.5
TRIM28-203ENST00000593582 FCN1O00602 326 aa11.92□□□□□ -0.5
TRIM28-203ENST00000593582 SPDEFO95238 335 aa11.92□□□□□ -0.5
Retrieved 100 of 20,778 RNA–protein pairs in 48.5 ms