RNA–Protein interactions for RNA: ENST00000585121.5

SS18-225, Transcript of SS18, nBAF chromatin remodeling complex subunit, humanhuman

TSL 2

Gene SS18, Length 1,545 nt, Biotype nonsense mediated decay, Subcellular localisation Cytoplasm, Cytosol, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SS18-225ENST00000585121 CENPOQ9BU64 300 aa9.74□□□□□ -0.85
SS18-225ENST00000585121 C11orf54Q9H0W9 315 aaPredicted RBP9.74□□□□□ -0.85
SS18-225ENST00000585121 OR51E2Q9H255 320 aa9.74□□□□□ -0.85
SS18-225ENST00000585121 OR1A1Q9P1Q5 309 aa9.74□□□□□ -0.85
SS18-225ENST00000585121 DNAH3Q8TD57 4116 aa9.73□□□□□ -0.85
SS18-225ENST00000585121 A0A075B6Q4 140 aa9.73□□□□□ -0.85
SS18-225ENST00000585121 RBBP9O75884 186 aa9.73□□□□□ -0.85
SS18-225ENST00000585121 HLA-DRB1P01911 266 aa9.73□□□□□ -0.85
SS18-225ENST00000585121 PRB2P02812 416 aaPredicted RBP9.73□□□□□ -0.85
SS18-225ENST00000585121 IGF1P05019 195 aa9.73□□□□□ -0.85
SS18-225ENST00000585121 THBS3P49746 956 aa9.73□□□□□ -0.85
SS18-225ENST00000585121 PLGLAQ15195 96 aa9.73□□□□□ -0.85
SS18-225ENST00000585121 C5orf64Q2M2E5 130 aa9.73□□□□□ -0.85
SS18-225ENST00000585121 RPL39P5Q59GN2 51 aa9.73□□□□□ -0.85
SS18-225ENST00000585121 LIN54Q6MZP7 749 aa9.73□□□□□ -0.85
SS18-225ENST00000585121 TMEM65Q6PI78 240 aa9.73□□□□□ -0.85
SS18-225ENST00000585121 FAM131AQ6UXB0 335 aa9.73□□□□□ -0.85
SS18-225ENST00000585121 Q6ZPA2 131 aa9.73□□□□□ -0.85
SS18-225ENST00000585121 C8orf86Q6ZUL3 223 aa9.73□□□□□ -0.85
SS18-225ENST00000585121 NPBQ8NG41 125 aa9.73□□□□□ -0.85
SS18-225ENST00000585121 DPF1Q92782 380 aa9.73□□□□□ -0.85
SS18-225ENST00000585121 PTX4Q96A99 478 aa9.73□□□□□ -0.85
SS18-225ENST00000585121 KCTD7Q96MP8 289 aa9.73□□□□□ -0.85
SS18-225ENST00000585121 TSC22D3Q99576 134 aa9.73□□□□□ -0.85
SS18-225ENST00000585121 MCRIP2Q9BUT9 160 aaKnown RBP9.73□□□□□ -0.85
SS18-225ENST00000585121 RNF150Q9ULK6 438 aa9.73□□□□□ -0.85
SS18-225ENST00000585121 WASHC3Q9Y3C0 194 aa9.73□□□□□ -0.85
SS18-225ENST00000585121 SHISA3A0PJX4 238 aa9.72□□□□□ -0.85
SS18-225ENST00000585121 NOTOA8MTQ0 251 aa9.72□□□□□ -0.85
SS18-225ENST00000585121 FABP7O15540 132 aa9.72□□□□□ -0.85
SS18-225ENST00000585121 IGHG4P01861 327 aa9.72□□□□□ -0.85
SS18-225ENST00000585121 RPLP1P05386 114 aaKnown RBP9.72□□□□□ -0.85
SS18-225ENST00000585121 CT45A6P0DMU7 189 aa9.72□□□□□ -0.85
SS18-225ENST00000585121 CT45A5P0DMU8 189 aa9.72□□□□□ -0.85
SS18-225ENST00000585121 CT45A7P0DMV0 189 aa9.72□□□□□ -0.85
SS18-225ENST00000585121 HIST1H1DP16402 221 aaKnown RBP9.72□□□□□ -0.85
SS18-225ENST00000585121 GNB3P16520 340 aa9.72□□□□□ -0.85
SS18-225ENST00000585121 VBP1P61758 197 aa9.72□□□□□ -0.85
SS18-225ENST00000585121 PLA2G7Q13093 441 aa9.72□□□□□ -0.85
SS18-225ENST00000585121 ARFRP1Q13795 201 aa9.72□□□□□ -0.85
SS18-225ENST00000585121 TPRA1Q86W33 373 aa9.72□□□□□ -0.85
SS18-225ENST00000585121 MRPL41Q8IXM3 137 aaKnown RBP9.72□□□□□ -0.85
SS18-225ENST00000585121 LINC00482Q8N8I6 264 aa9.72□□□□□ -0.85
SS18-225ENST00000585121 OR10J5Q8NHC4 309 aa9.72□□□□□ -0.85
SS18-225ENST00000585121 MRAPQ8TCY5 172 aa9.72□□□□□ -0.85
SS18-225ENST00000585121 RBMXL1Q96E39 390 aaKnown RBP9.72□□□□□ -0.85
SS18-225ENST00000585121 RITA1Q96K30 269 aa9.72□□□□□ -0.85
SS18-225ENST00000585121 RNF5Q99942 180 aa9.72□□□□□ -0.85
SS18-225ENST00000585121 AGMATQ9BSE5 352 aa9.72□□□□□ -0.85
SS18-225ENST00000585121 PARP12Q9H0J9 701 aaKnown RBP9.72□□□□□ -0.85
SS18-225ENST00000585121 ATG5Q9H1Y0 275 aa9.72□□□□□ -0.85
SS18-225ENST00000585121 OR51J1Q9H342 316 aa9.72□□□□□ -0.85
SS18-225ENST00000585121 PARP11Q9NR21 331 aa9.72□□□□□ -0.85
SS18-225ENST00000585121 TXNL4BQ9NX01 149 aaKnown RBP9.72□□□□□ -0.85
SS18-225ENST00000585121 RDH8Q9NYR8 311 aa9.72□□□□□ -0.85
SS18-225ENST00000585121 ZNF580Q9UK33 172 aa9.72□□□□□ -0.85
SS18-225ENST00000585121 H0YJW9 148 aa9.72□□□□□ -0.85
SS18-225ENST00000585121 BET1O15155 118 aa9.72□□□□□ -0.85
SS18-225ENST00000585121 APOA2P02652 100 aa9.72□□□□□ -0.85
SS18-225ENST00000585121 FCGR3AP08637 254 aa9.72□□□□□ -0.85
SS18-225ENST00000585121 CNTFRP26992 372 aa9.72□□□□□ -0.85
SS18-225ENST00000585121 CDX1P47902 265 aaPredicted RBP9.72□□□□□ -0.85
SS18-225ENST00000585121 NCS1P62166 190 aa9.72□□□□□ -0.85
SS18-225ENST00000585121 LSM3P62310 102 aaKnown RBP9.72□□□□□ -0.85
SS18-225ENST00000585121 SPCS2Q15005 226 aa9.72□□□□□ -0.85
SS18-225ENST00000585121 MOGAT2Q3SYC2 334 aa9.72□□□□□ -0.85
SS18-225ENST00000585121 GLDNQ6ZMI3 551 aaPredicted RBP9.72□□□□□ -0.85
SS18-225ENST00000585121 LINC00299Q6ZSB3 139 aa9.72□□□□□ -0.85
SS18-225ENST00000585121 RNF152Q8N8N0 203 aa9.72□□□□□ -0.85
SS18-225ENST00000585121 OR8U1Q8NH10 309 aa9.72□□□□□ -0.85
SS18-225ENST00000585121 RBM7Q9Y580 266 aaKnown RBP9.72□□□□□ -0.85
SS18-225ENST00000585121 WSB1Q9Y6I7 421 aa9.72□□□□□ -0.85
SS18-225ENST00000585121 A0A0B4J203 849 aa9.71□□□□□ -0.86
SS18-225ENST00000585121 LOC100506127A0A0U1RQW1 187 aa9.71□□□□□ -0.86
SS18-225ENST00000585121 CCL24O00175 119 aa9.71□□□□□ -0.86
SS18-225ENST00000585121 RAB27BO00194 218 aa9.71□□□□□ -0.86
SS18-225ENST00000585121 RRHO14718 337 aa9.71□□□□□ -0.86
SS18-225ENST00000585121 SCGNO76038 276 aa9.71□□□□□ -0.86
SS18-225ENST00000585121 NDUFA3O95167 84 aa9.71□□□□□ -0.86
SS18-225ENST00000585121 DIRAS3O95661 229 aa9.71□□□□□ -0.86
SS18-225ENST00000585121 ZNF182P17025 639 aaPredicted RBP9.71□□□□□ -0.86
SS18-225ENST00000585121 ZNF660Q6AZW8 331 aaPredicted RBP9.71□□□□□ -0.86
SS18-225ENST00000585121 ETV3LQ6ZN32 361 aa9.71□□□□□ -0.86
SS18-225ENST00000585121 C18orf65Q6ZTR6 163 aa9.71□□□□□ -0.86
SS18-225ENST00000585121 ZNF436-AS1Q8NC38 126 aaPredicted RBP9.71□□□□□ -0.86
SS18-225ENST00000585121 OR5AN1Q8NGI8 311 aa9.71□□□□□ -0.86
SS18-225ENST00000585121 DYNC2LI1Q8TCX1 351 aa9.71□□□□□ -0.86
SS18-225ENST00000585121 ABHD5Q8WTS1 349 aa9.71□□□□□ -0.86
SS18-225ENST00000585121 TSNAXQ99598 290 aaKnown RBP9.71□□□□□ -0.86
SS18-225ENST00000585121 GINS4Q9BRT9 223 aa9.71□□□□□ -0.86
SS18-225ENST00000585121 DCUN1D5Q9BTE7 237 aa9.71□□□□□ -0.86
SS18-225ENST00000585121 DCSTAMPQ9H295 470 aa9.71□□□□□ -0.86
SS18-225ENST00000585121 AURKAIP1Q9NWT8 199 aaPredicted RBP9.71□□□□□ -0.86
SS18-225ENST00000585121 ZMAT5Q9UDW3 170 aaKnown RBP9.71□□□□□ -0.86
SS18-225ENST00000585121 KCNK7Q9Y2U2 307 aa9.71□□□□□ -0.86
SS18-225ENST00000585121 IGHV7-81A0A0B4J1V7 117 aa9.7□□□□□ -0.86
SS18-225ENST00000585121 TRAV41A0A0B4J266 112 aa9.7□□□□□ -0.86
SS18-225ENST00000585121 IGKV1-6A0A0C4DH72 117 aa9.7□□□□□ -0.86
SS18-225ENST00000585121 SMIM30A4D0T7 59 aa9.7□□□□□ -0.86
SS18-225ENST00000585121 MFNGO00587 321 aa9.7□□□□□ -0.86
Retrieved 100 of 20,778 RNA–protein pairs in 38.6 ms