RNA–Protein interactions for RNA: ENST00000582653.1

SHMT1-209, Transcript of serine hydroxymethyltransferase 1, humanhuman

TSL 3

Gene SHMT1, Length 879 nt, Biotype protein coding, Subcellular localisation Cytosol, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SHMT1-209ENST00000582653 LDLRAD4O15165 306 aa15.92■□□□□ 0.14
SHMT1-209ENST00000582653 DENRO43583 198 aaKnown RBP15.92■□□□□ 0.14
SHMT1-209ENST00000582653 IGLV1-40P01703 118 aa15.92■□□□□ 0.14
SHMT1-209ENST00000582653 NDPQ00604 133 aa15.92■□□□□ 0.14
SHMT1-209ENST00000582653 ZNF491Q8N8L2 437 aa15.92■□□□□ 0.14
SHMT1-209ENST00000582653 VCX3BQ9H321 246 aa15.92■□□□□ 0.14
SHMT1-209ENST00000582653 SHISA3A0PJX4 238 aa15.91■□□□□ 0.14
SHMT1-209ENST00000582653 SEC14L6B5MCN3 397 aa15.91■□□□□ 0.14
SHMT1-209ENST00000582653 RRHO14718 337 aa15.91■□□□□ 0.14
SHMT1-209ENST00000582653 GSTP1P09211 210 aaKnown RBP15.91■□□□□ 0.14
SHMT1-209ENST00000582653 OR10A3P58181 314 aa15.91■□□□□ 0.14
SHMT1-209ENST00000582653 RUNX1Q01196 453 aa15.91■□□□□ 0.14
SHMT1-209ENST00000582653 ECSCRQ19T08 205 aa15.91■□□□□ 0.14
SHMT1-209ENST00000582653 MOGAT2Q3SYC2 334 aa15.91■□□□□ 0.14
SHMT1-209ENST00000582653 MINDY2Q8NBR6 621 aa15.91■□□□□ 0.14
SHMT1-209ENST00000582653 OR56B1Q8NGI3 324 aa15.91■□□□□ 0.14
SHMT1-209ENST00000582653 CASTOR1Q8WTX7 329 aa15.91■□□□□ 0.14
SHMT1-209ENST00000582653 MGAT4AQ9UM21 535 aa15.91■□□□□ 0.14
SHMT1-209ENST00000582653 KCNK7Q9Y2U2 307 aa15.91■□□□□ 0.14
SHMT1-209ENST00000582653 OR5H14A6NHG9 310 aa15.9■□□□□ 0.14
SHMT1-209ENST00000582653 I3L521 148 aa15.9■□□□□ 0.14
SHMT1-209ENST00000582653 MC5RP33032 325 aa15.9■□□□□ 0.14
SHMT1-209ENST00000582653 ECI1P42126 302 aa15.9■□□□□ 0.14
SHMT1-209ENST00000582653 RAB9AP51151 201 aa15.9■□□□□ 0.14
SHMT1-209ENST00000582653 CX3CL1P78423 397 aa15.9■□□□□ 0.14
SHMT1-209ENST00000582653 PLGLAQ15195 96 aa15.9■□□□□ 0.14
SHMT1-209ENST00000582653 TBCEQ15813 527 aaPredicted RBP15.9■□□□□ 0.14
SHMT1-209ENST00000582653 ZNF367Q7RTV3 350 aa15.9■□□□□ 0.14
SHMT1-209ENST00000582653 OR5AN1Q8NGI8 311 aa15.9■□□□□ 0.14
SHMT1-209ENST00000582653 OR1N2Q8NGR9 330 aa15.9■□□□□ 0.14
SHMT1-209ENST00000582653 EDARADDQ8WWZ3 215 aa15.9■□□□□ 0.14
SHMT1-209ENST00000582653 CLCC1Q96S66 551 aa15.9■□□□□ 0.14
SHMT1-209ENST00000582653 GHITMQ9H3K2 345 aa15.9■□□□□ 0.14
SHMT1-209ENST00000582653 RAB22AQ9UL26 194 aa15.9■□□□□ 0.14
SHMT1-209ENST00000582653 VSIG4Q9Y279 399 aa15.9■□□□□ 0.14
SHMT1-209ENST00000582653 WASHC3Q9Y3C0 194 aa15.9■□□□□ 0.14
SHMT1-209ENST00000582653 A3GALT2U3KPV4 340 aa15.9■□□□□ 0.14
SHMT1-209ENST00000582653 ERICH4A6NGS2 130 aa15.89■□□□□ 0.13
SHMT1-209ENST00000582653 TRDCB7Z8K6 153 aa15.89■□□□□ 0.13
SHMT1-209ENST00000582653 SOX15O60248 233 aa15.89■□□□□ 0.13
SHMT1-209ENST00000582653 CD3GP09693 182 aa15.89■□□□□ 0.13
SHMT1-209ENST00000582653 EGR2P11161 476 aaPredicted RBP15.89■□□□□ 0.13
SHMT1-209ENST00000582653 INSL3P51460 131 aa15.89■□□□□ 0.13
SHMT1-209ENST00000582653 PSMD7P51665 324 aa15.89■□□□□ 0.13
SHMT1-209ENST00000582653 GNB1P62873 340 aa15.89■□□□□ 0.13
SHMT1-209ENST00000582653 ZNF260Q3ZCT1 412 aa15.89■□□□□ 0.13
SHMT1-209ENST00000582653 C19orf54Q5BKX5 351 aa15.89■□□□□ 0.13
SHMT1-209ENST00000582653 ASPHD1Q5U4P2 390 aa15.89■□□□□ 0.13
SHMT1-209ENST00000582653 ZNF660Q6AZW8 331 aaPredicted RBP15.89■□□□□ 0.13
SHMT1-209ENST00000582653 ZNF383Q8NA42 475 aa15.89■□□□□ 0.13
SHMT1-209ENST00000582653 PTX4Q96A99 478 aa15.89■□□□□ 0.13
SHMT1-209ENST00000582653 GAB2Q9UQC2 676 aa15.89■□□□□ 0.13
SHMT1-209ENST00000582653 A0A1W2PN81 502 aa15.88■□□□□ 0.13
SHMT1-209ENST00000582653 OR8U8P0C7N1 319 aa15.88■□□□□ 0.13
SHMT1-209ENST00000582653 CHRNA7P36544 502 aa15.88■□□□□ 0.13
SHMT1-209ENST00000582653 HSPA13P48723 471 aa15.88■□□□□ 0.13
SHMT1-209ENST00000582653 PRR25Q96S07 402 aa15.88■□□□□ 0.13
SHMT1-209ENST00000582653 FAM103A1Q9BTL3 118 aaKnown RBP15.88■□□□□ 0.13
SHMT1-209ENST00000582653 ALX4Q9H161 411 aaPredicted RBP15.88■□□□□ 0.13
SHMT1-209ENST00000582653 RDH8Q9NYR8 311 aa15.88■□□□□ 0.13
SHMT1-209ENST00000582653 ZNF221Q9UK13 617 aa15.88■□□□□ 0.13
SHMT1-209ENST00000582653 NUBP2Q9Y5Y2 271 aa15.88■□□□□ 0.13
SHMT1-209ENST00000582653 NBEAL2Q6ZNJ1 2754 aa15.88■□□□□ 0.13
SHMT1-209ENST00000582653 A0A0B4J203 849 aa15.87■□□□□ 0.13
SHMT1-209ENST00000582653 TRAV1-2A0A0B4J238 106 aa15.87■□□□□ 0.13
SHMT1-209ENST00000582653 PDCD5O14737 125 aa15.87■□□□□ 0.13
SHMT1-209ENST00000582653 IGKV1-16P04430 117 aa15.87■□□□□ 0.13
SHMT1-209ENST00000582653 ZNF616Q08AN1 781 aa15.87■□□□□ 0.13
SHMT1-209ENST00000582653 PSG5Q15238 335 aa15.87■□□□□ 0.13
SHMT1-209ENST00000582653 IGSF11Q5DX21 431 aa15.87■□□□□ 0.13
SHMT1-209ENST00000582653 ABHD5Q8WTS1 349 aa15.87■□□□□ 0.13
SHMT1-209ENST00000582653 MAFIPQ8WZ33 124 aa15.87■□□□□ 0.13
SHMT1-209ENST00000582653 RAB3CQ96E17 227 aa15.87■□□□□ 0.13
SHMT1-209ENST00000582653 METTL1Q9UBP6 276 aaKnown RBP15.87■□□□□ 0.13
SHMT1-209ENST00000582653 BLOC1S6Q9UL45 172 aa15.87■□□□□ 0.13
SHMT1-209ENST00000582653 ZNF256Q9Y2P7 627 aaPredicted RBP15.87■□□□□ 0.13
SHMT1-209ENST00000582653 A0A075B6Q4 140 aa15.86■□□□□ 0.13
SHMT1-209ENST00000582653 IFITM5A6NNB3 132 aa15.86■□□□□ 0.13
SHMT1-209ENST00000582653 BET1O15155 118 aa15.86■□□□□ 0.13
SHMT1-209ENST00000582653 RBBP9O75884 186 aa15.86■□□□□ 0.13
SHMT1-209ENST00000582653 GSTT2P0CG29 244 aa15.86■□□□□ 0.13
SHMT1-209ENST00000582653 GSTT2BP0CG30 244 aa15.86■□□□□ 0.13
SHMT1-209ENST00000582653 GNB3P16520 340 aa15.86■□□□□ 0.13
SHMT1-209ENST00000582653 CRIP2P52943 208 aaPredicted RBP15.86■□□□□ 0.13
SHMT1-209ENST00000582653 RPS16P62249 146 aaKnown RBP15.86■□□□□ 0.13
SHMT1-209ENST00000582653 MRPS15P82914 257 aaKnown RBP15.86■□□□□ 0.13
SHMT1-209ENST00000582653 CD200R1LQ6Q8B3 271 aa15.86■□□□□ 0.13
SHMT1-209ENST00000582653 OR10R2Q8NGX6 335 aa15.86■□□□□ 0.13
SHMT1-209ENST00000582653 RNF5Q99942 180 aa15.86■□□□□ 0.13
SHMT1-209ENST00000582653 NDUFB11Q9NX14 153 aa15.86■□□□□ 0.13
SHMT1-209ENST00000582653 ZNF230Q9UIE0 474 aaPredicted RBP15.86■□□□□ 0.13
SHMT1-209ENST00000582653 FOXA2Q9Y261 457 aaPredicted RBP15.86■□□□□ 0.13
SHMT1-209ENST00000582653 U3KQK5 164 aa15.86■□□□□ 0.13
SHMT1-209ENST00000582653 TENM3Q9P273 2699 aa15.86■□□□□ 0.13
SHMT1-209ENST00000582653 TRDV1A0A1B0GX56 115 aa15.85■□□□□ 0.13
SHMT1-209ENST00000582653 M0R1X1 148 aa15.85■□□□□ 0.13
SHMT1-209ENST00000582653 FABP7O15540 132 aa15.85■□□□□ 0.13
SHMT1-209ENST00000582653 CA2P00918 260 aa15.85■□□□□ 0.13
SHMT1-209ENST00000582653 FCGR3AP08637 254 aa15.85■□□□□ 0.13
SHMT1-209ENST00000582653 PPP1R27Q86WC6 154 aa15.85■□□□□ 0.13
Retrieved 100 of 20,778 RNA–protein pairs in 27.7 ms