RNA–Protein interactions for RNA: ENST00000580003.1

SS18-214, Transcript of SS18, nBAF chromatin remodeling complex subunit, humanhuman

TSL 2

Gene SS18, Length 609 nt, Biotype retained intron, Subcellular localisation Cytoplasm, Cytosol, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SS18-214ENST00000580003 NKX6-2Q9C056 277 aaPredicted RBP1.36□□□□□ -2.19
SS18-214ENST00000580003 UBQLN4Q9NRR5 601 aa1.36□□□□□ -2.19
SS18-214ENST00000580003 IGKV3D-7A0A0C4DH55 119 aa1.35□□□□□ -2.19
SS18-214ENST00000580003 IGKV3OR2-268A0A0C4DH90 116 aa1.35□□□□□ -2.19
SS18-214ENST00000580003 TNFAIP8O95379 198 aa1.35□□□□□ -2.19
SS18-214ENST00000580003 C1QCP02747 245 aa1.35□□□□□ -2.19
SS18-214ENST00000580003 CD24P25063 80 aa1.35□□□□□ -2.19
SS18-214ENST00000580003 OR4D1Q15615 310 aa1.35□□□□□ -2.19
SS18-214ENST00000580003 OR2D3Q8NGH3 330 aa1.35□□□□□ -2.19
SS18-214ENST00000580003 ANGPT4Q9Y264 503 aa1.35□□□□□ -2.19
SS18-214ENST00000580003 FADS2O95864 444 aaKnown RBP1.34□□□□□ -2.19
SS18-214ENST00000580003 AGTR1P30556 359 aa1.34□□□□□ -2.19
SS18-214ENST00000580003 PSMD7P51665 324 aa1.34□□□□□ -2.19
SS18-214ENST00000580003 STX3Q13277 289 aa1.34□□□□□ -2.19
SS18-214ENST00000580003 DRAM2Q6UX65 266 aa1.34□□□□□ -2.19
SS18-214ENST00000580003 SCGB1D4Q6XE38 83 aa1.34□□□□□ -2.19
SS18-214ENST00000580003 SLC13A5Q86YT5 568 aaPredicted RBP1.34□□□□□ -2.19
SS18-214ENST00000580003 ASB17Q8WXJ9 295 aa1.34□□□□□ -2.19
SS18-214ENST00000580003 TMEM56Q96MV1 263 aa1.34□□□□□ -2.19
SS18-214ENST00000580003 FAM210AQ96ND0 272 aa1.34□□□□□ -2.19
SS18-214ENST00000580003 SERPINB11Q96P15 392 aa1.34□□□□□ -2.19
SS18-214ENST00000580003 EIF5A2Q9GZV4 153 aaKnown RBP1.34□□□□□ -2.19
SS18-214ENST00000580003 SLC2A9Q9NRM0 540 aa1.34□□□□□ -2.19
SS18-214ENST00000580003 MS4A12Q9NXJ0 267 aa1.34□□□□□ -2.19
SS18-214ENST00000580003 TRBV6-5A0A0K0K1A5 114 aa1.33□□□□□ -2.2
SS18-214ENST00000580003 BPGMP07738 259 aa1.33□□□□□ -2.2
SS18-214ENST00000580003 HSPA9P38646 679 aaKnown RBP1.33□□□□□ -2.2
SS18-214ENST00000580003 TAS2R30P59541 319 aa1.33□□□□□ -2.2
SS18-214ENST00000580003 RAB8AP61006 207 aa1.33□□□□□ -2.2
SS18-214ENST00000580003 TMEM42Q69YG0 159 aa1.33□□□□□ -2.2
SS18-214ENST00000580003 XKRXQ6PP77 449 aa1.33□□□□□ -2.2
SS18-214ENST00000580003 NRBP2Q9NSY0 501 aa1.33□□□□□ -2.2
SS18-214ENST00000580003 STK38LQ9Y2H1 464 aa1.33□□□□□ -2.2
SS18-214ENST00000580003 SBDSQ9Y3A5 250 aaKnown RBP eCLIP1.33□□□□□ -2.2
SS18-214ENST00000580003 SCN9AQ15858 1988 aa1.32□□□□□ -2.2
SS18-214ENST00000580003 MEIKINA0A087WXM9 373 aa1.32□□□□□ -2.2
SS18-214ENST00000580003 F5H5K5 113 aa1.32□□□□□ -2.2
SS18-214ENST00000580003 F8W036 122 aa1.32□□□□□ -2.2
SS18-214ENST00000580003 ARL6IP5O75915 188 aa1.32□□□□□ -2.2
SS18-214ENST00000580003 ASS1P00966 412 aaKnown RBP1.32□□□□□ -2.2
SS18-214ENST00000580003 APOA1P02647 267 aa1.32□□□□□ -2.2
SS18-214ENST00000580003 IL9P15248 144 aa1.32□□□□□ -2.2
SS18-214ENST00000580003 ADORA1P30542 326 aa1.32□□□□□ -2.2
SS18-214ENST00000580003 DAPP51397 102 aa1.32□□□□□ -2.2
SS18-214ENST00000580003 STC1P52823 247 aa1.32□□□□□ -2.2
SS18-214ENST00000580003 OR10K2Q6IF99 312 aa1.32□□□□□ -2.2
SS18-214ENST00000580003 UNQ6190/PRO20217Q6UXQ8 127 aa1.32□□□□□ -2.2
SS18-214ENST00000580003 CLDND2Q8NHS1 167 aa1.32□□□□□ -2.2
SS18-214ENST00000580003 IGHV3-64A0A075B6Q5 118 aa1.31□□□□□ -2.2
SS18-214ENST00000580003 BHLHE40O14503 412 aa1.31□□□□□ -2.2
SS18-214ENST00000580003 GSTZ1O43708 216 aaPredicted RBP1.31□□□□□ -2.2
SS18-214ENST00000580003 PGLYRP1O75594 196 aaPredicted RBP1.31□□□□□ -2.2
SS18-214ENST00000580003 NDUFB2O95178 105 aa1.31□□□□□ -2.2
SS18-214ENST00000580003 HBZP02008 142 aa1.31□□□□□ -2.2
SS18-214ENST00000580003 CRYBA1P05813 215 aa1.31□□□□□ -2.2
SS18-214ENST00000580003 LCN1P31025 176 aa1.31□□□□□ -2.2
SS18-214ENST00000580003 CA7P43166 264 aa1.31□□□□□ -2.2
SS18-214ENST00000580003 KCNJ3P48549 501 aa1.31□□□□□ -2.2
SS18-214ENST00000580003 GNA12Q03113 381 aa1.31□□□□□ -2.2
SS18-214ENST00000580003 PRB3Q04118 309 aaPredicted RBP1.31□□□□□ -2.2
SS18-214ENST00000580003 TMEM155Q4W5P6 130 aa1.31□□□□□ -2.2
SS18-214ENST00000580003 FBXO48Q5FWF7 155 aa1.31□□□□□ -2.2
SS18-214ENST00000580003 RPS4Y2Q8TD47 263 aa1.31□□□□□ -2.2
SS18-214ENST00000580003 OR51B6Q9H340 312 aa1.31□□□□□ -2.2
SS18-214ENST00000580003 POFUT2Q9Y2G5 429 aa1.31□□□□□ -2.2
SS18-214ENST00000580003 IGKV3-7A0A075B6H7 116 aa1.3□□□□□ -2.2
SS18-214ENST00000580003 TXNDC9O14530 226 aa1.3□□□□□ -2.2
SS18-214ENST00000580003 SLC35E2BP0CK96 405 aa1.3□□□□□ -2.2
SS18-214ENST00000580003 DAD1P61803 113 aa1.3□□□□□ -2.2
SS18-214ENST00000580003 NNATQ16517 81 aa1.3□□□□□ -2.2
SS18-214ENST00000580003 CYGBQ8WWM9 190 aa1.3□□□□□ -2.2
SS18-214ENST00000580003 SMIM12Q96EX1 92 aa1.3□□□□□ -2.2
SS18-214ENST00000580003 Q96M85 177 aa1.3□□□□□ -2.2
SS18-214ENST00000580003 OR7D2Q96RA2 312 aa1.3□□□□□ -2.2
SS18-214ENST00000580003 GNB1LQ9BYB4 327 aa1.3□□□□□ -2.2
SS18-214ENST00000580003 ZNF737O75373 536 aa1.29□□□□□ -2.2
SS18-214ENST00000580003 GPX2P18283 190 aa1.29□□□□□ -2.2
SS18-214ENST00000580003 OR10J1P30954 320 aa1.29□□□□□ -2.2
SS18-214ENST00000580003 AKR1C3P42330 323 aa1.29□□□□□ -2.2
SS18-214ENST00000580003 CRATP43155 626 aa1.29□□□□□ -2.2
SS18-214ENST00000580003 DLX6P56179 175 aa1.29□□□□□ -2.2
SS18-214ENST00000580003 HERVK_113P63121 156 aa1.29□□□□□ -2.2
SS18-214ENST00000580003 DYNC2LI1Q8TCX1 351 aa1.29□□□□□ -2.2
SS18-214ENST00000580003 SMCR5Q8TEV8 140 aa1.29□□□□□ -2.2
SS18-214ENST00000580003 CYTH2Q99418 400 aa1.29□□□□□ -2.2
SS18-214ENST00000580003 GRIN2BQ13224 1484 aa1.29□□□□□ -2.2
SS18-214ENST00000580003 COPEO14579 308 aa1.28□□□□□ -2.2
SS18-214ENST00000580003 SYNGR1O43759 233 aa1.28□□□□□ -2.2
SS18-214ENST00000580003 NPYP01303 97 aa1.28□□□□□ -2.2
SS18-214ENST00000580003 IVLP07476 585 aa1.28□□□□□ -2.2
SS18-214ENST00000580003 RBM48Q5RL73 367 aaKnown RBP1.28□□□□□ -2.2
SS18-214ENST00000580003 ATP5L2Q7Z4Y8 100 aa1.28□□□□□ -2.2
SS18-214ENST00000580003 SIKE1Q9BRV8 207 aa1.28□□□□□ -2.2
SS18-214ENST00000580003 DOHHQ9BU89 302 aa1.28□□□□□ -2.2
SS18-214ENST00000580003 TAAR3PQ9P1P4 343 aa1.28□□□□□ -2.2
SS18-214ENST00000580003 RTTNQ86VV8 2226 aa1.28□□□□□ -2.2
SS18-214ENST00000580003 MAP3K19Q56UN5 1328 aa1.27□□□□□ -2.21
SS18-214ENST00000580003 MRASO14807 208 aa1.27□□□□□ -2.21
SS18-214ENST00000580003 MPZL2O60487 215 aa1.27□□□□□ -2.21
SS18-214ENST00000580003 CFL1P23528 166 aaKnown RBP1.27□□□□□ -2.21
Retrieved 100 of 20,778 RNA–protein pairs in 93.2 ms